Metadata-Version: 2.1
Name: roidynamics
Version: 0.2.0
Summary: Time-evolution analysis of image intensity under specific mask geometries
Project-URL: homepage, https://github.com/guiwitz/roidynamics
Project-URL: repository, https://github.com/guiwitz/roidynamics
Author-email: Guillaume Witz <guillaume.witz@unibe.ch>
License: BSD 3-Clause License
License-File: LICENSE
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Education
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX
Classifier: Operating System :: Unix
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Python: >=3.8
Requires-Dist: imageio
Requires-Dist: imageio-ffmpeg
Requires-Dist: matplotlib
Requires-Dist: microfilm[multipage]
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: scikit-image
Provides-Extra: interactive
Requires-Dist: ipywidgets; extra == 'interactive'
Requires-Dist: jupyterlab; extra == 'interactive'
Provides-Extra: test
Requires-Dist: pytest>=6.0; extra == 'test'
Description-Content-Type: text/markdown

[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/guiwitz/roidynamics/master?urlpath=lab)
[![PyPI](https://img.shields.io/pypi/v/roidynamics.svg?color=green)](https://pypi.org/project/roidynamics)
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# roidynamics

Small Python package providing tools to analyze the dynamics of intensity in time-lapse microscopy images split into regions of specific geometries.  

## Installation

You can install this package directly using: 

```
pip install roidynamics
```

**Note**: If you encounter errors when trying to use the ND2 format because of errors related to unusual ROIs (non-square), you can try to install an alternative version with:

```
pip install git+https://github.com/guiwitz/nd2reader.git@master#egg=nd2reader -U
```

## Authors

This package has been created by Guillaume Witz, Data Science Lab, University of Bern in collaboration with Jakobus van Unen, Pertz lab, Institute of Cell Biology, University of Bern.
