Metadata-Version: 2.1
Name: vessel-express-napari
Version: 0.0.9
Summary: A simple plugin for 3D vessel segmentation
Home-page: https://github.com/MMV-Lab/vessel-express-napari
Author: Lennart Kowitz
Author-email: lennart.kowitz@isas.de
License: BSD-3-Clause
Project-URL: Bug Tracker, https://github.com/MMV-Lab/vessel-express-napari/issues
Project-URL: Documentation, https://github.com/MMV-Lab/vessel-express-napari#README.md
Project-URL: Source Code, https://github.com/MMV-Lab/vessel-express-napari
Project-URL: User Support, https://github.com/MMV-Lab/vessel-express-napari/issues
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: Framework :: napari
Classifier: Topic :: Software Development :: Testing
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: OS Independent
Classifier: License :: OSI Approved :: BSD License
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: napari-plugin-engine (>=0.1.4)
Requires-Dist: numpy
Requires-Dist: itk
Requires-Dist: scikit-image
Requires-Dist: aicssegmentation

# vessel-express-napari

[![License](https://img.shields.io/pypi/l/vessel-express-napari.svg?color=green)](https://github.com/MMV-Lab/vessel-express-napari/raw/main/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/vessel-express-napari.svg?color=green)](https://pypi.org/project/vessel-express-napari/)
[![Python Version](https://img.shields.io/pypi/pyversions/vessel-express-napari.svg?color=green)](https://python.org)
[![tests](https://github.com/MMV-Lab/vessel-express-napari/workflows/tests/badge.svg)](https://github.com/MMV-Lab/vessel-express-napari/actions)
[![codecov](https://codecov.io/gh/MMV-Lab/vessel-express-napari/branch/main/graph/badge.svg?token=mJPpDiioxu)](https://codecov.io/gh/MMV-Lab/vessel-express-napari)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/vessel-express-napari)](https://www.napari-hub.org/plugins/vessel-express-napari)

A simple plugin for 3D vessel segmentation of LSFM images

This [napari] plugin can be used to optimize the segmentation parameters for the [main VesselExpress software platform](https://github.com/RUB-Bioinf/VesselExpress).

----------------------------------


## Installation

The easiest way to install the plugin is to open napari, go to Plugins, then Install/Uninstall plugins. You will be able to find the plugin by name "vessel-express-napari". 

Or, you can install `vessel-express-napari` via [pip]:

    pip install vessel-express-napari


To install latest development version :

    pip install git+https://github.com/MMV-Lab/vessel-express-napari.git


## Documentation

We provide a [quick start guide] to explain the important pieces of this plugin. Suggestions and feature quests are very welcomed. 


## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,
"vessel-express-napari" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/MMV-Lab/vessel-express-napari/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/
[quick start guide]: https://github.com/MMV-Lab/vessel-express-napari/blob/main/quick_start.md

