LICENSE
MANIFEST.in
README.rst
deploy_docs.sh
environment.yaml
pyproject.toml
requirements.txt
rtd_trigger.txt
setup.py
setup_docs.sh
docs/source/batch_correction.rst
docs/source/checkpoint_resume.rst
docs/source/classifier_evaluation.rst
docs/source/conf.py
docs/source/database_concurrency_audit.rst
docs/source/distributed_execution.rst
docs/source/index.rst
docs/source/leakage_audit.rst
docs/source/localization.rst
docs/source/module_audit.rst
docs/source/plugin_sdk.rst
docs/source/reproducibility_manifests.rst
docs/source/run_history.rst
docs/source/setting_animations.rst
docs/source/threading_cancellation_audit.rst
docs/source/umap_multiobjective.rst
docs/source/_static/custom.css
docs/source/_static/logo_spacr.png
docs/source/_static/fonts/OpenSans-Light.ttf
docs/source/_static/fonts/OpenSans-Regular.ttf
docs/source/_static/fonts/OpenSans-SemiBold.ttf
fonts/OpenSans-Regular.ttf
spacr/__init__.py
spacr/__main__.py
spacr/_v1_v2_bridge.py
spacr/active_learning.py
spacr/agreement.py
spacr/align.py
spacr/app_annotate.py
spacr/app_classify.py
spacr/app_make_masks.py
spacr/app_mask.py
spacr/app_measure.py
spacr/app_sequencing.py
spacr/app_umap.py
spacr/artifacts.py
spacr/attribution.py
spacr/batch.py
spacr/batch_correction.py
spacr/cancellation.py
spacr/chaining.py
spacr/checkpoint.py
spacr/classifier_evaluation.py
spacr/classify.py
spacr/classify_classes.py
spacr/cli.py
spacr/cli_database.py
spacr/cli_leakage.py
spacr/cli_plugins.py
spacr/cli_remote.py
spacr/cli_repro.py
spacr/confusion.py
spacr/convert.py
spacr/core.py
spacr/counting.py
spacr/crashreport.py
spacr/crop_source.py
spacr/crops.py
spacr/curation.py
spacr/custom_features.py
spacr/data_manager.py
spacr/database_concurrency.py
spacr/database_schema.py
spacr/deep_spacr.py
spacr/diameter.py
spacr/doctor.py
spacr/errors.py
spacr/external_masks.py
spacr/feature_dict.py
spacr/filters.py
spacr/foreign.py
spacr/gui.py
spacr/gui_core.py
spacr/gui_elements.py
spacr/gui_utils.py
spacr/hits.py
spacr/hyperparam.py
spacr/illumination.py
spacr/image_colors.py
spacr/io.py
spacr/layers.py
spacr/lineage.py
spacr/logger.py
spacr/logging_util.py
spacr/macro.py
spacr/mask_io.py
spacr/measure.py
spacr/measure_hooks.py
spacr/measurement_schema.py
spacr/merge_tables.py
spacr/methods_export.py
spacr/ml.py
spacr/model_check.py
spacr/model_compare.py
spacr/model_zoo.py
spacr/napari_bridge.py
spacr/notebook_export.py
spacr/object.py
spacr/ome_zarr.py
spacr/omero.py
spacr/pipeline_graph.py
spacr/pipeline_v2.py
spacr/plate_qc.py
spacr/plot.py
spacr/plugins.py
spacr/ports.py
spacr/power_model.py
spacr/power_simulate.py
spacr/predictions.py
spacr/profiler.py
spacr/projects.py
spacr/regression_qc.py
spacr/remote_execution.py
spacr/report.py
spacr/resume.py
spacr/roi.py
spacr/row_exclusions.py
spacr/run_compare.py
spacr/run_journal.py
spacr/runctx.py
spacr/schema.py
spacr/seg_qc.py
spacr/selection.py
spacr/sequencing.py
spacr/sequencing_qc.py
spacr/setting_animations.py
spacr/settings.py
spacr/settings_spec.py
spacr/sim.py
spacr/sp_stats.py
spacr/spacr_cellpose.py
spacr/spacrops.py
spacr/submodules.py
spacr/surrogate.py
spacr/tiff_io.py
spacr/timelapse.py
spacr/torch_artifacts.py
spacr/toxo.py
spacr/train_compare.py
spacr/training_basis.py
spacr/umap_annotations.py
spacr/updater.py
spacr/utils.py
spacr/validate.py
spacr/version.py
spacr/zstack.py
spacr.egg-info/PKG-INFO
spacr.egg-info/SOURCES.txt
spacr.egg-info/dependency_links.txt
spacr.egg-info/entry_points.txt
spacr.egg-info/requires.txt
spacr.egg-info/top_level.txt
spacr/anndata_export/__init__.py
spacr/qt/__init__.py
spacr/qt/__main__.py
spacr/qt/annotate_engine.py
spacr/qt/app.py
spacr/qt/bridge.py
spacr/qt/button_roles.py
spacr/qt/chaining.py
spacr/qt/command_palette.py
spacr/qt/comparison_grid.py
spacr/qt/counting_tool.py
spacr/qt/crop_thumbs.py
spacr/qt/curation_tool.py
spacr/qt/dialogs.py
spacr/qt/dnd.py
spacr/qt/dnd_handlers.py
spacr/qt/first_run.py
spacr/qt/folder_metadata.py
spacr/qt/hf_download.py
spacr/qt/i18n.py
spacr/qt/i18n_module_summaries.py
spacr/qt/i18n_module_summaries_asia.py
spacr/qt/i18n_module_summaries_other.py
spacr/qt/i18n_module_summaries_west.py
spacr/qt/iconset.py
spacr/qt/imagery.py
spacr/qt/ingest_preview.py
spacr/qt/job_runner.py
spacr/qt/layer_viewer.py
spacr/qt/linked_selection.py
spacr/qt/logging_util.py
spacr/qt/mask_engine.py
spacr/qt/maturity.py
spacr/qt/menus.py
spacr/qt/multi_format.py
spacr/qt/notify.py
spacr/qt/ortho_view.py
spacr/qt/plate_queue.py
spacr/qt/preferences.py
spacr/qt/prefs.py
spacr/qt/prerun.py
spacr/qt/preview_registry.py
spacr/qt/recipes.py
spacr/qt/regex_detect.py
spacr/qt/regex_editor.py
spacr/qt/resource_cleanup.py
spacr/qt/roi_tool.py
spacr/qt/settings_diff.py
spacr/qt/settings_search.py
spacr/qt/shortcuts.py
spacr/qt/shutdown.py
spacr/qt/space.py
spacr/qt/synthetic.py
spacr/qt/theme.py
spacr/qt/verbose_logger.py
spacr/qt/walkthrough.py
spacr/qt/ai/__init__.py
spacr/qt/ai/github_auth.py
spacr/qt/ai/issue_report.py
spacr/qt/ai/keys.py
spacr/qt/ai/manuscript.py
spacr/qt/ai/prompts.py
spacr/qt/ai/providers.py
spacr/qt/ai/settings.py
spacr/qt/ai/worker.py
spacr/qt/screens/__init__.py
spacr/qt/screens/agreement.py
spacr/qt/screens/align.py
spacr/qt/screens/annotate.py
spacr/qt/screens/app_screen.py
spacr/qt/screens/batch.py
spacr/qt/screens/classifier_evaluation.py
spacr/qt/screens/control_chart.py
spacr/qt/screens/convert.py
spacr/qt/screens/curate.py
spacr/qt/screens/data_manager.py
spacr/qt/screens/db_browser.py
spacr/qt/screens/distributed_jobs.py
spacr/qt/screens/dose_response.py
spacr/qt/screens/experiment_design.py
spacr/qt/screens/feature_explorer.py
spacr/qt/screens/foreign.py
spacr/qt/screens/gate_editor.py
spacr/qt/screens/graph_builder.py
spacr/qt/screens/hit_list.py
spacr/qt/screens/hyperparam.py
spacr/qt/screens/image_scatter.py
spacr/qt/screens/lineage.py
spacr/qt/screens/make_masks.py
spacr/qt/screens/methods_export.py
spacr/qt/screens/model_compare.py
spacr/qt/screens/model_zoo.py
spacr/qt/screens/napari_bridge.py
spacr/qt/screens/outliers.py
spacr/qt/screens/pca.py
spacr/qt/screens/pipeline_graph.py
spacr/qt/screens/plate_view.py
spacr/qt/screens/power.py
spacr/qt/screens/profiler.py
spacr/qt/screens/project_browser.py
spacr/qt/screens/qc_dashboard.py
spacr/qt/screens/queue.py
spacr/qt/screens/report.py
spacr/qt/screens/run_compare.py
spacr/qt/screens/run_history.py
spacr/qt/screens/settings_model.py
spacr/qt/screens/tabulate.py
spacr/qt/screens/train_compare.py
spacr/qt/screens/trellis.py
spacr/qt/tutorial/__init__.py
spacr/qt/tutorial/__main__.py
spacr/qt/tutorial/engine.py
spacr/qt/tutorial/scripts.py
spacr/qt/widgets/__init__.py
spacr/qt/widgets/activity_spinner.py
spacr/qt/widgets/aggregation_rules.py
spacr/qt/widgets/ai_chat_panel.py
spacr/qt/widgets/ai_toggle_label.py
spacr/qt/widgets/ambient.py
spacr/qt/widgets/animation_zoom.py
spacr/qt/widgets/barcode_regex.py
spacr/qt/widgets/card.py
spacr/qt/widgets/channel_mapping.py
spacr/qt/widgets/class_editor.py
spacr/qt/widgets/column_picker.py
spacr/qt/widgets/console_panel.py
spacr/qt/widgets/control_chart.py
spacr/qt/widgets/data_filter_panel.py
spacr/qt/widgets/divider.py
spacr/qt/widgets/dna_rain.py
spacr/qt/widgets/dna_rain_settings.py
spacr/qt/widgets/dose_response.py
spacr/qt/widgets/dot_link.py
spacr/qt/widgets/drawer.py
spacr/qt/widgets/eliding.py
spacr/qt/widgets/empty_state.py
spacr/qt/widgets/external_mask_inputs.py
spacr/qt/widgets/feature_dictionary.py
spacr/qt/widgets/feature_explorer.py
spacr/qt/widgets/feature_rank.py
spacr/qt/widgets/field_fade.py
spacr/qt/widgets/figure_grid.py
spacr/qt/widgets/figure_queue.py
spacr/qt/widgets/formula.py
spacr/qt/widgets/formula_editor.py
spacr/qt/widgets/gate_console.py
spacr/qt/widgets/gate_editor.py
spacr/qt/widgets/gate_settings.py
spacr/qt/widgets/gate_spec.py
spacr/qt/widgets/graph_builder.py
spacr/qt/widgets/graph_spec.py
spacr/qt/widgets/home.py
spacr/qt/widgets/hover_tooltip.py
spacr/qt/widgets/info_link.py
spacr/qt/widgets/live_preview.py
spacr/qt/widgets/measure_preview.py
spacr/qt/widgets/metadata_table.py
spacr/qt/widgets/motility_preview.py
spacr/qt/widgets/outlier_model.py
spacr/qt/widgets/pca_model.py
spacr/qt/widgets/pca_view.py
spacr/qt/widgets/pivot_builder.py
spacr/qt/widgets/pivot_spec.py
spacr/qt/widgets/plate_layout.py
spacr/qt/widgets/power_design.py
spacr/qt/widgets/preview_controls.py
spacr/qt/widgets/qc_summary.py
spacr/qt/widgets/row_exclusion.py
spacr/qt/widgets/section.py
spacr/qt/widgets/table_chip.py
spacr/qt/widgets/tile.py
spacr/qt/widgets/timelapse_movie.py
spacr/qt/widgets/timelapse_preview.py
spacr/qt/widgets/toggle.py
spacr/qt/widgets/trellis_spec.py
spacr/qt/widgets/trellis_view.py
spacr/qt/widgets/umap_explorer.py
spacr/qt/widgets/usage_bar.py
spacr/resources/data/barcodes_column.csv
spacr/resources/data/barcodes_grna.csv
spacr/resources/data/barcodes_row.csv
spacr/resources/data/lopit.csv
spacr/resources/data/toxoplasma_metadata.csv
spacr/resources/font/open_sans/OFL.txt
spacr/resources/font/open_sans/OpenSans-Italic-VariableFont_wdth,wght.ttf
spacr/resources/font/open_sans/OpenSans-VariableFont_wdth,wght.ttf
spacr/resources/font/open_sans/README.txt
spacr/resources/font/open_sans/static/OpenSans-Bold.ttf
spacr/resources/font/open_sans/static/OpenSans-BoldItalic.ttf
spacr/resources/font/open_sans/static/OpenSans-Italic.ttf
spacr/resources/font/open_sans/static/OpenSans-Light.ttf
spacr/resources/font/open_sans/static/OpenSans-LightItalic.ttf
spacr/resources/font/open_sans/static/OpenSans-Regular.ttf
spacr/resources/font/open_sans/static/OpenSans-SemiBold.ttf
spacr/resources/font/open_sans/static/OpenSans-SemiBoldItalic.ttf
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spacr/resources/icons/activation.png
spacr/resources/icons/agreement.png
spacr/resources/icons/align.png
spacr/resources/icons/analyze_plaques.png
spacr/resources/icons/anndata_export.png
spacr/resources/icons/annotate.png
spacr/resources/icons/app_icon.ico
spacr/resources/icons/app_icon.png
spacr/resources/icons/barcode_qc.png
spacr/resources/icons/batch.png
spacr/resources/icons/cellpose_all.png
spacr/resources/icons/cellpose_masks.png
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spacr/resources/icons/classifier_evaluation.png
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spacr/resources/icons/control_chart.png
spacr/resources/icons/convert.png
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spacr/resources/icons/external_masks.png
spacr/resources/icons/feature_dict.png
spacr/resources/icons/feature_explorer.png
spacr/resources/icons/flow_chart_v3.png
spacr/resources/icons/foreign.png
spacr/resources/icons/gate_editor.png
spacr/resources/icons/graph_builder.png
spacr/resources/icons/hit_list.png
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spacr/resources/icons/model_zoo.png
spacr/resources/icons/motility.png
spacr/resources/icons/napari_bridge.png
spacr/resources/icons/outliers.png
spacr/resources/icons/pca.png
spacr/resources/icons/pipeline_graph.png
spacr/resources/icons/plaque.png
spacr/resources/icons/plate_view.png
spacr/resources/icons/power.png
spacr/resources/icons/profiler.png
spacr/resources/icons/project_browser.png
spacr/resources/icons/qc_dashboard.png
spacr/resources/icons/queue.png
spacr/resources/icons/recruitment.png
spacr/resources/icons/regression.png
spacr/resources/icons/replication.png
spacr/resources/icons/report.png
spacr/resources/icons/run.png
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spacr/resources/icons/sequencing.png
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spacr/resources/icons/tabulate.png
spacr/resources/icons/timelapse.png
spacr/resources/icons/train_cellpose.png
spacr/resources/icons/train_compare.png
spacr/resources/icons/trellis.png
spacr/resources/icons/umap.png
spacr/resources/setting_animations/manifest.json
spacr/resources/setting_animations/gifs/adjust_cells.gif
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spacr/resources/setting_animations/gifs/timelapse_remove_transient.gif
spacr/resources/setting_animations/gifs/ultrack_contour_sigma.gif
spacr/resources/setting_animations/gifs/ultrack_division_weight.gif
spacr/resources/setting_animations/gifs/uninfected.gif
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