AUTHORS
LICENSE
MANIFEST.in
README.md
setup.py
hivtrace/__init__.py
hivtrace/hivtrace.py
hivtrace/hivtraceviz.py
hivtrace/strip_drams.py
hivtrace/true_append.py
hivtrace.egg-info/PKG-INFO
hivtrace.egg-info/SOURCES.txt
hivtrace.egg-info/dependency_links.txt
hivtrace.egg-info/entry_points.txt
hivtrace.egg-info/requires.txt
hivtrace.egg-info/top_level.txt
hivtrace/rsrc/LANL.FASTA.gz
hivtrace/rsrc/LANL.TN93OUTPUT.csv.gz
hivtrace/web/static/hivtrace.css
hivtrace/web/static/hivtrace.js
hivtrace/web/static/jquery.js
hivtrace/web/static/tour.js
hivtrace/web/static/vendor.js
hivtrace/web/static/vendor.min.js
hivtrace/web/static/css/bootstrap.css
hivtrace/web/static/css/vendor.css
hivtrace/web/static/fonts/fontawesome-webfont.eot
hivtrace/web/static/fonts/fontawesome-webfont.svg
hivtrace/web/static/fonts/fontawesome-webfont.ttf
hivtrace/web/static/fonts/fontawesome-webfont.woff
hivtrace/web/static/fonts/fontawesome-webfont.woff2
hivtrace/web/static/fonts/glyphicons-halflings-regular.eot
hivtrace/web/static/fonts/glyphicons-halflings-regular.svg
hivtrace/web/static/fonts/glyphicons-halflings-regular.ttf
hivtrace/web/static/fonts/glyphicons-halflings-regular.woff
hivtrace/web/static/fonts/glyphicons-halflings-regular.woff2
hivtrace/web/static/src/clusternetwork.js
hivtrace/web/static/src/histogram.js
hivtrace/web/static/src/main.js
hivtrace/web/static/src/misc.js
hivtrace/web/static/src/scatterplot.js
hivtrace/web/static/vendor/bootstrap/Gruntfile.js
hivtrace/web/static/vendor/bootstrap/package.js
hivtrace/web/static/vendor/bootstrap/grunt/bs-commonjs-generator.js
hivtrace/web/static/vendor/bootstrap/grunt/bs-glyphicons-data-generator.js
hivtrace/web/static/vendor/bootstrap/grunt/bs-lessdoc-parser.js
hivtrace/web/static/vendor/bootstrap/grunt/bs-raw-files-generator.js
hivtrace/web/static/vendor/bootstrap/js/affix.js
hivtrace/web/static/vendor/bootstrap/js/alert.js
hivtrace/web/static/vendor/bootstrap/js/button.js
hivtrace/web/static/vendor/bootstrap/js/carousel.js
hivtrace/web/static/vendor/bootstrap/js/collapse.js
hivtrace/web/static/vendor/bootstrap/js/dropdown.js
hivtrace/web/static/vendor/bootstrap/js/modal.js
hivtrace/web/static/vendor/bootstrap/js/popover.js
hivtrace/web/static/vendor/bootstrap/js/scrollspy.js
hivtrace/web/static/vendor/bootstrap/js/tab.js
hivtrace/web/static/vendor/bootstrap/js/tooltip.js
hivtrace/web/static/vendor/bootstrap/js/transition.js
hivtrace/web/static/vendor/crossfilter/crossfilter.js
hivtrace/web/static/vendor/crossfilter/crossfilter.min.js
hivtrace/web/static/vendor/crossfilter/index.js
hivtrace/web/static/vendor/crossfilter/src/array.js
hivtrace/web/static/vendor/crossfilter/src/bisect.js
hivtrace/web/static/vendor/crossfilter/src/crossfilter.js
hivtrace/web/static/vendor/crossfilter/src/filter.js
hivtrace/web/static/vendor/crossfilter/src/heap.js
hivtrace/web/static/vendor/crossfilter/src/heapselect.js
hivtrace/web/static/vendor/crossfilter/src/identity.js
hivtrace/web/static/vendor/crossfilter/src/insertionsort.js
hivtrace/web/static/vendor/crossfilter/src/null.js
hivtrace/web/static/vendor/crossfilter/src/permute.js
hivtrace/web/static/vendor/crossfilter/src/quicksort.js
hivtrace/web/static/vendor/crossfilter/src/reduce.js
hivtrace/web/static/vendor/crossfilter/src/zero.js
hivtrace/web/static/vendor/crossfilter/test/benchmark.js
hivtrace/web/static/vendor/crossfilter/test/bisect-test.js
hivtrace/web/static/vendor/crossfilter/test/crossfilter-test.js
hivtrace/web/static/vendor/crossfilter/test/heap-test.js
hivtrace/web/static/vendor/crossfilter/test/permute-test.js
hivtrace/web/static/vendor/crossfilter/test/select-test.js
hivtrace/web/static/vendor/crossfilter/test/sort-test.js
hivtrace/web/static/vendor/crossfilter/test/version-test.js
hivtrace/web/static/vendor/d3/d3.js
hivtrace/web/static/vendor/d3/d3.min.js
hivtrace/web/static/vendor/dcjs/Gruntfile.js
hivtrace/web/static/vendor/dcjs/dc.css
hivtrace/web/static/vendor/dcjs/dc.js
hivtrace/web/static/vendor/dcjs/dc.min.js
hivtrace/web/static/vendor/dcjs/docs/coverage.js
hivtrace/web/static/vendor/dcjs/web/stock.js
hivtrace/web/static/vendor/dcjs/web/css/bootstrap-responsive.css
hivtrace/web/static/vendor/dcjs/web/css/bootstrap-responsive.min.css
hivtrace/web/static/vendor/dcjs/web/css/bootstrap.css
hivtrace/web/static/vendor/dcjs/web/css/bootstrap.min.css
hivtrace/web/static/vendor/dcjs/web/css/colorbrewer.css
hivtrace/web/static/vendor/dcjs/web/css/dc.css
hivtrace/web/static/vendor/dcjs/web/docs/docco.css
hivtrace/web/static/vendor/dcjs/web/docs/public/stylesheets/normalize.css
hivtrace/web/static/vendor/dcjs/web/highlighter/shAutoloader.js
hivtrace/web/static/vendor/dcjs/web/highlighter/shBrushJScript.js
hivtrace/web/static/vendor/dcjs/web/highlighter/shBrushXml.js
hivtrace/web/static/vendor/dcjs/web/highlighter/shCore.css
hivtrace/web/static/vendor/dcjs/web/highlighter/shCore.js
hivtrace/web/static/vendor/dcjs/web/highlighter/shThemeDefault.css
hivtrace/web/static/vendor/dcjs/web/js/bootstrap.js
hivtrace/web/static/vendor/dcjs/web/js/bootstrap.min.js
hivtrace/web/static/vendor/dcjs/web/js/crossfilter.js
hivtrace/web/static/vendor/dcjs/web/js/d3.js
hivtrace/web/static/vendor/dcjs/web/js/dc.js
hivtrace/web/static/vendor/dcjs/web/js/env-data.js
hivtrace/web/static/vendor/dcjs/web/js/jquery.js
hivtrace/web/static/vendor/font-awesome/css/font-awesome.css
hivtrace/web/static/vendor/font-awesome/css/font-awesome.min.css
hivtrace/web/static/vendor/hyphy-vision/gulpfile.js
hivtrace/web/static/vendor/hyphy-vision/hyphy-vision.css
hivtrace/web/static/vendor/hyphy-vision/hyphy-vision.js
hivtrace/web/static/vendor/hyphy-vision/hyphy-vision.min.js
hivtrace/web/static/vendor/hyphy-vision/src/busted/busted-histogram.js
hivtrace/web/static/vendor/hyphy-vision/src/busted/busted.js
hivtrace/web/static/vendor/hyphy-vision/src/busted/exports.js
hivtrace/web/static/vendor/hyphy-vision/src/datamonkey/alignment-viewer.js
hivtrace/web/static/vendor/hyphy-vision/src/datamonkey/attribute-editor.js
hivtrace/web/static/vendor/hyphy-vision/src/datamonkey/datamonkey.js
hivtrace/web/static/vendor/hyphy-vision/src/datamonkey/helpers.js
hivtrace/web/static/vendor/hyphy-vision/src/datamonkey/shared-tree.js
hivtrace/web/static/vendor/jquery/src/ajax.js
hivtrace/web/static/vendor/jquery/src/attributes.js
hivtrace/web/static/vendor/jquery/src/callbacks.js
hivtrace/web/static/vendor/jquery/src/core.js
hivtrace/web/static/vendor/jquery/src/css.js
hivtrace/web/static/vendor/jquery/src/data.js
hivtrace/web/static/vendor/jquery/src/deferred.js
hivtrace/web/static/vendor/jquery/src/deprecated.js
hivtrace/web/static/vendor/jquery/src/dimensions.js
hivtrace/web/static/vendor/jquery/src/effects.js
hivtrace/web/static/vendor/jquery/src/event.js
hivtrace/web/static/vendor/jquery/src/intro.js
hivtrace/web/static/vendor/jquery/src/jquery.js
hivtrace/web/static/vendor/jquery/src/manipulation.js
hivtrace/web/static/vendor/jquery/src/offset.js
hivtrace/web/static/vendor/jquery/src/outro.js
hivtrace/web/static/vendor/jquery/src/queue.js
hivtrace/web/static/vendor/jquery/src/selector-sizzle.js
hivtrace/web/static/vendor/jquery/src/selector.js
hivtrace/web/static/vendor/jquery/src/serialize.js
hivtrace/web/static/vendor/jquery/src/support.js
hivtrace/web/static/vendor/jquery/src/traversing.js
hivtrace/web/static/vendor/jquery/src/wrap.js
hivtrace/web/static/vendor/jquery/src/ajax/jsonp.js
hivtrace/web/static/vendor/jquery/src/ajax/load.js
hivtrace/web/static/vendor/jquery/src/ajax/parseJSON.js
hivtrace/web/static/vendor/jquery/src/ajax/parseXML.js
hivtrace/web/static/vendor/jquery/src/ajax/script.js
hivtrace/web/static/vendor/jquery/src/ajax/xhr.js
hivtrace/web/static/vendor/jquery/src/attributes/attr.js
hivtrace/web/static/vendor/jquery/src/attributes/classes.js
hivtrace/web/static/vendor/jquery/src/attributes/prop.js
hivtrace/web/static/vendor/jquery/src/attributes/support.js
hivtrace/web/static/vendor/jquery/src/attributes/val.js
hivtrace/web/static/vendor/jquery/src/core/access.js
hivtrace/web/static/vendor/jquery/src/core/init.js
hivtrace/web/static/vendor/jquery/src/core/parseHTML.js
hivtrace/web/static/vendor/jquery/src/core/ready.js
hivtrace/web/static/vendor/jquery/src/css/addGetHookIf.js
hivtrace/web/static/vendor/jquery/src/css/curCSS.js
hivtrace/web/static/vendor/jquery/src/css/defaultDisplay.js
hivtrace/web/static/vendor/jquery/src/css/hiddenVisibleSelectors.js
hivtrace/web/static/vendor/jquery/src/css/support.js
hivtrace/web/static/vendor/jquery/src/data/support.js
hivtrace/web/static/vendor/jquery/src/effects/Tween.js
hivtrace/web/static/vendor/jquery/src/effects/animatedSelector.js
hivtrace/web/static/vendor/jquery/src/effects/support.js
hivtrace/web/static/vendor/jquery/src/event/ajax.js
hivtrace/web/static/vendor/jquery/src/event/alias.js
hivtrace/web/static/vendor/jquery/src/event/support.js
hivtrace/web/static/vendor/jquery/src/exports/amd.js
hivtrace/web/static/vendor/jquery/src/exports/global.js
hivtrace/web/static/vendor/jquery/src/manipulation/_evalUrl.js
hivtrace/web/static/vendor/jquery/src/manipulation/support.js
hivtrace/web/static/vendor/jquery/src/queue/delay.js
hivtrace/web/static/vendor/jquery/src/traversing/findFilter.js
hivtrace/web/static/vendor/phylotree/phylotree.css
hivtrace/web/static/vendor/phylotree/phylotree.js
hivtrace/web/static/vendor/tether/gulpfile.js
hivtrace/web/static/vendor/tether-shepherd/gulpfile.js
hivtrace/web/static/vendor/tether-shepherd/docs/welcome/css/prism.css
hivtrace/web/static/vendor/tether-shepherd/docs/welcome/css/welcome.css
hivtrace/web/static/vendor/tether-shepherd/docs/welcome/js/jquery.min.js
hivtrace/web/static/vendor/tether-shepherd/docs/welcome/js/welcome.js
hivtrace/web/static/vendor/tether-shepherd/src/js/shepherd.js
hivtrace/web/static/vendor/tether/docs/css/intro.css
hivtrace/web/static/vendor/tether/docs/js/intro.js
hivtrace/web/static/vendor/tether/docs/js/markAttachment.js
hivtrace/web/static/vendor/tether/docs/welcome/css/browser-demo.css
hivtrace/web/static/vendor/tether/docs/welcome/css/prism.css
hivtrace/web/static/vendor/tether/docs/welcome/css/welcome.css
hivtrace/web/static/vendor/tether/docs/welcome/js/drop.js
hivtrace/web/static/vendor/tether/docs/welcome/js/jquery.js
hivtrace/web/static/vendor/tether/docs/welcome/js/log.js
hivtrace/web/static/vendor/tether/docs/welcome/js/tether-v0.1.3.js
hivtrace/web/static/vendor/tether/docs/welcome/js/welcome.js
hivtrace/web/static/vendor/tether/examples/chosen/chosen.css
hivtrace/web/static/vendor/tether/examples/chosen/chosen.js
hivtrace/web/static/vendor/tether/examples/common/css/style.css
hivtrace/web/static/vendor/tether/examples/dolls/dolls.css
hivtrace/web/static/vendor/tether/examples/dolls/dolls.js
hivtrace/web/static/vendor/tether/examples/facebook/facebook.css
hivtrace/web/static/vendor/tether/examples/resources/css/base.css
hivtrace/web/static/vendor/tether/examples/resources/js/jquery.js
hivtrace/web/static/vendor/tether/examples/resources/js/log.js
hivtrace/web/static/vendor/tether/examples/viewport/colors.css
hivtrace/web/static/vendor/tether/src/js/abutment.js
hivtrace/web/static/vendor/tether/src/js/constraint.js
hivtrace/web/static/vendor/tether/src/js/markAttachment.js
hivtrace/web/static/vendor/tether/src/js/shift.js
hivtrace/web/static/vendor/tether/src/js/tether.js
hivtrace/web/static/vendor/tether/src/js/utils.js
hivtrace/web/static/vendor/underscore/underscore-min.js
hivtrace/web/static/vendor/underscore/underscore.js
hivtrace/web/static/workers/lcc.js
hivtrace/web/static/workers/worker-vendor.js
hivtrace/web/templates/results.html
test/test_hivtrace.py