scanpy>=1.9.6
anndata>=0.9.2
numpy>=1.23
pandas>=1.5
scipy>=1.9
matplotlib>=3.7
openpyxl>=3.1
tqdm>=4.66

[all]
mygene>=3.2.2
gseapy>=1.1.2
celltypist>=1.5.0
bbknn>=1.6.0
rpy2>=3.5.10
sentence-transformers>=2.2.2
faiss-cpu>=1.7.4

[celltypist]
celltypist>=1.5.0

[deseq2]
rpy2>=3.5.10

[enrichr]
gseapy>=1.1.2

[integration]
bbknn>=1.6.0

[mygene]
mygene>=3.2.2

[semantic_dedup]
sentence-transformers>=2.2.2
faiss-cpu>=1.7.4
