.git_archival.txt
.gitattributes
.gitignore
.gitlab-ci.yml
.readthedocs.yml
CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
docs/Makefile
docs/conf.py
docs/further_processing.rst
docs/gbs_HIW.rst
docs/gbs_INI_examples.rst
docs/index.rst
docs/installation.rst
docs/operations.rst
docs/user_guide.rst
docs/_static/css/custom.css
docs/images/MseI_res_site_spacer.png
docs/images/MspI_cutsite_remnant.png
docs/images/Operations_info.png
docs/images/PstI_cutsite_remnant.png
docs/images/Truseq.png
docs/images/Workflow_operations.png
docs/images/adapters_Elshire.png
docs/images/adapters_ILVO.png
docs/images/adapters_Poland.png
docs/images/adapters_variable_common.png
docs/images/config_explanation.png
docs/images/ddpe_example.png
docs/images/ddpe_scheme.png
docs/images/ddpe_scheme_sep.png
docs/images/ddpe_scheme_spacer.png
docs/images/ddpe_scheme_spacer_sep.png
docs/images/ddse_scheme.png
docs/images/gbs_sliding_window.png
docs/images/merged_PE_DD-GBS_SMAP_legend.png
docs/images/merged_PE_DD-GBS_SMAP_legend_2.png
docs/images/merged_PE_SD-GBS_SMAP_legend.png
docs/images/merged_PE_SD-GBS_SMAP_legend_2.png
docs/images/merged_legend.png
docs/images/paired_end_legend.png
docs/images/sdpe_scheme.png
docs/images/sdpe_scheme_sep.png
docs/images/sdse_scheme.png
docs/images/separately_PE_DD-GBS_SMAP_legend.png
docs/images/separately_PE_DD-GBS_SMAP_legend_2.png
docs/images/separately_PE_SD-GBS_SMAP_legend.png
docs/images/separately_PE_SD-GBS_SMAP_legend_2.png
docs/images/separately_SE_DD-GBS_SMAP_legend.png
docs/images/separately_SE_DD-GBS_SMAP_legend_2.png
docs/images/separately_SE_SD-GBS_SMAP_legend.png
docs/images/separately_SE_SD-GBS_SMAP_legend_2.png
docs/images/example/A_Restriction_digest.png
docs/images/example/B_ligation.png
docs/images/example/C_PCR_amplification.png
docs/images/example/E_Demultiplexing_Forward_100bp.png
docs/images/example/E_sequencing_Forward_100bp.png
docs/images/example/E_sequencing_Forward_75bp.png
docs/images/example/E_sequencing_Reverse_100bp.png
docs/images/example/E_sequencing_Reverse_75bp.png
docs/images/example/I_merging_100bp.png
docs/images/example/I_merging_75bp.png
docs/images/example/trimming_Forward_100bp.png
docs/images/example/trimming_Forward_75bp.png
docs/images/example/trimming_Reverse_100bp.png
docs/images/example/trimming_Reverse_75bp.png
gbprocess/__init__.py
gbprocess/__main__.py
gbprocess/data.py
gbprocess/pipeline.py
gbprocess/utils.py
gbprocess/version.py
gbprocess/operations/__init__.py
gbprocess/operations/demultiplexing.py
gbprocess/operations/filtering.py
gbprocess/operations/merging.py
gbprocess/operations/operation.py
gbprocess/operations/trimming.py
gbprocess_ngs.egg-info/PKG-INFO
gbprocess_ngs.egg-info/SOURCES.txt
gbprocess_ngs.egg-info/dependency_links.txt
gbprocess_ngs.egg-info/entry_points.txt
gbprocess_ngs.egg-info/requires.txt
gbprocess_ngs.egg-info/top_level.txt
test/data.py
test/test_main.py
test/test_operations.py
test/test_pipeline.py
test/test_sequencingdata.py
test/test_utils.py
test/utils.py