LICENSE.txt
README.md
setup.py
benchmarks/__init__.py
benchmarks/benchmarks.py
cell2cell/__init__.py
cell2cell.egg-info/PKG-INFO
cell2cell.egg-info/SOURCES.txt
cell2cell.egg-info/dependency_links.txt
cell2cell.egg-info/not-zip-safe
cell2cell.egg-info/requires.txt
cell2cell.egg-info/top_level.txt
cell2cell/analysis/__init__.py
cell2cell/analysis/cell2cell_pipelines.py
cell2cell/analysis/tensor_downstream.py
cell2cell/analysis/tensor_pipelines.py
cell2cell/analysis/genetic_algorithm/__init__.py
cell2cell/analysis/genetic_algorithm/base.py
cell2cell/analysis/genetic_algorithm/consensus.py
cell2cell/analysis/genetic_algorithm/objectives.py
cell2cell/analysis/genetic_algorithm/search.py
cell2cell/clustering/__init__.py
cell2cell/clustering/cluster_interactions.py
cell2cell/core/__init__.py
cell2cell/core/cci_scores.py
cell2cell/core/cell.py
cell2cell/core/communication_scores.py
cell2cell/core/interaction_space.py
cell2cell/core/prepared_scorer.py
cell2cell/datasets/__init__.py
cell2cell/datasets/anndata.py
cell2cell/datasets/gsea_data.py
cell2cell/datasets/heuristic_data.py
cell2cell/datasets/random_data.py
cell2cell/datasets/toy_data.py
cell2cell/external/__init__.py
cell2cell/external/goenrich.py
cell2cell/external/gseapy.py
cell2cell/external/pcoa.py
cell2cell/external/pcoa_utils.py
cell2cell/external/umap.py
cell2cell/io/__init__.py
cell2cell/io/directories.py
cell2cell/io/read_data.py
cell2cell/io/save_data.py
cell2cell/plotting/__init__.py
cell2cell/plotting/aesthetics.py
cell2cell/plotting/ccc_plot.py
cell2cell/plotting/cci_plot.py
cell2cell/plotting/circular_plot.py
cell2cell/plotting/factor_plot.py
cell2cell/plotting/pcoa_plot.py
cell2cell/plotting/pval_plot.py
cell2cell/plotting/tensor_plot.py
cell2cell/plotting/umap_plot.py
cell2cell/preprocessing/__init__.py
cell2cell/preprocessing/cutoffs.py
cell2cell/preprocessing/find_elements.py
cell2cell/preprocessing/gene_ontology.py
cell2cell/preprocessing/integrate_data.py
cell2cell/preprocessing/manipulate_dataframes.py
cell2cell/preprocessing/ppi.py
cell2cell/preprocessing/rnaseq.py
cell2cell/preprocessing/signal.py
cell2cell/spatial/__init__.py
cell2cell/spatial/distances.py
cell2cell/spatial/filtering.py
cell2cell/spatial/neighborhoods.py
cell2cell/stats/__init__.py
cell2cell/stats/enrichment.py
cell2cell/stats/gini.py
cell2cell/stats/multitest.py
cell2cell/stats/permutation.py
cell2cell/tensor/__init__.py
cell2cell/tensor/coupled_factorization.py
cell2cell/tensor/coupled_tensor.py
cell2cell/tensor/external_scores.py
cell2cell/tensor/factor_manipulation.py
cell2cell/tensor/factorization.py
cell2cell/tensor/metrics.py
cell2cell/tensor/subset.py
cell2cell/tensor/tensor.py
cell2cell/tensor/tensor_manipulation.py
cell2cell/utils/__init__.py
cell2cell/utils/networks.py
cell2cell/utils/parallel_computing.py
tests/test_analysis_genetic_algorithm.py
tests/test_analysis_pipelines.py
tests/test_analysis_tensor_downstream.py
tests/test_clustering.py
tests/test_core_cci_scores.py
tests/test_core_cell.py
tests/test_core_communication_scores.py
tests/test_core_interaction_space.py
tests/test_datasets.py
tests/test_external_goenrich.py
tests/test_external_gseapy.py
tests/test_external_pcoa.py
tests/test_external_umap.py
tests/test_io.py
tests/test_plotting.py
tests/test_preprocessing_cutoffs.py
tests/test_preprocessing_find_elements.py
tests/test_preprocessing_gene_ontology.py
tests/test_preprocessing_integrate_data.py
tests/test_preprocessing_manipulate_dataframes.py
tests/test_preprocessing_ppi.py
tests/test_preprocessing_rnaseq.py
tests/test_preprocessing_signal.py
tests/test_spatial.py
tests/test_stats.py
tests/test_tensor_coupled.py
tests/test_tensor_elbow.py
tests/test_tensor_external_scores.py
tests/test_tensor_helpers.py
tests/test_tensor_tensor.py
tests/test_utils.py