Metadata-Version: 2.1
Name: vcfsynonymous
Version: 0.2.0
Summary: Detect synonymous genetic variants in VCF
Home-page: https://github.com/Grelot/vcfsynonymous
Author: Pierre-Edouard GUERIN
Author-email: pierre-edouard.guerin@cefe.cnrs.fr
License: MIT
Description: # VCFSYNONYMOUS
        
        [![PyPI version](https://badge.fury.io/py/vcfsynonymous.svg)](https://badge.fury.io/py/vcfsynonymous)
        [![license](https://img.shields.io/pypi/l/vcfsynonymous.svg)](https://pypi.org/project/vcfsynonymous/)
        [![Build Status](https://travis-ci.com/Grelot/vcfsynonymous.svg?branch=main)](https://travis-ci.com/Grelot/vcfsynonymous)
        [![Supported Python Versions](https://img.shields.io/pypi/pyversions/vcfsynonymous.svg)](https://pypi.python.org/pypi/vcfsynonymous)
        
        
        
        Giving `.gff3` and `.fasta` files of a genome and `.vcf` detected SNPs onto this genome, **VCFSYNONYMOUS** returns two `.vcf` files. The first one contains synonymous SNPs and the second one contains non-synonymous SNPs.
        
        
        ## INSTALLATION
        
        ```
        pip3 install vcfsynonymous
        ```
        
        ## GET STARTED
        
        ```
        vcfsynonymous --vcf tests/data/sample.vcf \
         --genome tests/data/genome.fasta \
         --annotation tests/data/genome.gff3
        ```
        
        
        ___________________________________________________________
        
        ```
        python -m vcfsynonymous --vcf tests/data/sample.vcf \
         --genome tests/data/genome.fasta \
         --annotation tests/data/genome.gff3 \
         --output_prefix res
        ```
        
        
        ### upload package
        
        ```
        pip3 uninstall vcfsynonymous
        rm -rf build/
        rm -rf dist/
        rm -rf vcfsynonymous.egg-info/
        python setup.py sdist bdist_wheel
        pip3 install .
        
        twine upload dist/*
        ```
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
