Compare Differential CpG Analysis Tools
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| Program               | Input data                   | Method/Model                                 | Co-variable |
+-----------------------+------------------------------+----------------------------------------------+-------------+
| dmc_fisher.py         | Proportion value (RRBS/WGBS) | Fisher's exact test                          | No          |
+-----------------------+------------------------------+----------------------------------------------+-------------+
| dmc_logit.py          | Proportion value (RRBS/WGBS) | Logistic regression                          | Yes         |
+-----------------------+------------------------------+----------------------------------------------+-------------+
| dmc_bb.py             | Proportion value (RRBS/WGBS) | Beta-binomial regression                     | Yes         |
+-----------------------+------------------------------+----------------------------------------------+-------------+
| dmc_ttest.py          | Beta- or M-value (450K/850K) | Student's T test                             | No          |
+-----------------------+------------------------------+----------------------------------------------+-------------+
| dmc_glm.py            | Beta- or M-value (450K/850K) | Generalized linear model                     | Yes         |
+-----------------------+------------------------------+----------------------------------------------+-------------+
| dmc_nonparametric.py  | Beta- or M-value (450K/850K) | Mann–Whitney U test or Kruskal-Wallis H test | No          |
+-----------------------+------------------------------+----------------------------------------------+-------------+
| dmc_Bayes.py          | Beta- or M-value (450K/850K) | Bayes estimation                             | No          |
+-----------------------+------------------------------+----------------------------------------------+-------------+

