README.md
pyproject.toml
src/deepcell_cli/__init__.py
src/deepcell_cli/__main__.py
src/deepcell_cli/_findings.py
src/deepcell_cli/capabilities.py
src/deepcell_cli/capability-contract.json
src/deepcell_cli/client.py
src/deepcell_cli/config.py
src/deepcell_cli/context.py
src/deepcell_cli/errors.py
src/deepcell_cli/logging_setup.py
src/deepcell_cli/main.py
src/deepcell_cli/mcp_server.py
src/deepcell_cli/oauth_provider.py
src/deepcell_cli/output.py
src/deepcell_cli/revision.py
src/deepcell_cli/stages.py
src/deepcell_cli/surface.py
src/deepcell_cli/sync_state.py
src/deepcell_cli/upgrade_check.py
src/deepcell_cli/xml_replace.py
src/deepcell_cli.egg-info/PKG-INFO
src/deepcell_cli.egg-info/SOURCES.txt
src/deepcell_cli.egg-info/dependency_links.txt
src/deepcell_cli.egg-info/entry_points.txt
src/deepcell_cli.egg-info/requires.txt
src/deepcell_cli.egg-info/top_level.txt
src/deepcell_cli/commands/__init__.py
src/deepcell_cli/commands/_batch_input.py
src/deepcell_cli/commands/_datatypes.py
src/deepcell_cli/commands/_defs_warnings.py
src/deepcell_cli/commands/_negative_args.py
src/deepcell_cli/commands/_swapped_args.py
src/deepcell_cli/commands/_version_display.py
src/deepcell_cli/commands/_write_opts.py
src/deepcell_cli/commands/account.py
src/deepcell_cli/commands/auth.py
src/deepcell_cli/commands/changes.py
src/deepcell_cli/commands/deck.py
src/deepcell_cli/commands/defs.py
src/deepcell_cli/commands/describe.py
src/deepcell_cli/commands/doc.py
src/deepcell_cli/commands/doctor.py
src/deepcell_cli/commands/download.py
src/deepcell_cli/commands/edit.py
src/deepcell_cli/commands/example.py
src/deepcell_cli/commands/export.py
src/deepcell_cli/commands/export_docx.py
src/deepcell_cli/commands/export_pdf.py
src/deepcell_cli/commands/export_pptx.py
src/deepcell_cli/commands/files.py
src/deepcell_cli/commands/grep.py
src/deepcell_cli/commands/guide.py
src/deepcell_cli/commands/help_cmd.py
src/deepcell_cli/commands/impact.py
src/deepcell_cli/commands/import_cmd.py
src/deepcell_cli/commands/ingest.py
src/deepcell_cli/commands/merge.py
src/deepcell_cli/commands/query.py
src/deepcell_cli/commands/reasoning.py
src/deepcell_cli/commands/ref.py
src/deepcell_cli/commands/replace.py
src/deepcell_cli/commands/rules.py
src/deepcell_cli/commands/share.py
src/deepcell_cli/commands/sync.py
src/deepcell_cli/commands/upgrade.py
src/deepcell_cli/commands/variant.py
src/deepcell_cli/commands/version.py
src/deepcell_cli/commands/viewer.py
src/deepcell_cli/commands/workspace.py
tests/test_anon.py
tests/test_claim_strength.py
tests/test_client.py
tests/test_client_surface_header.py
tests/test_config.py
tests/test_conflict_reason.py
tests/test_deck_help_contract.py
tests/test_deck_op_shape.py
tests/test_docs_catalog.py
tests/test_doctor.py
tests/test_download.py
tests/test_findings_provenance.py
tests/test_guide_eval_a4_a7.py
tests/test_guide_flag_drift.py
tests/test_help_flag_drift.py
tests/test_impact_commands.py
tests/test_ingest_command.py
tests/test_logging_setup.py
tests/test_mcp_auth.py
tests/test_mcp_server.py
tests/test_op_reachability.py
tests/test_openapi_route_parity.py
tests/test_output_export_notes.py
tests/test_output_keeps_the_answer.py
tests/test_reasoning_commands.py
tests/test_reasoning_diff_command.py
tests/test_ref_flag_drift.py
tests/test_round6_signal_regressions.py
tests/test_search_reach.py
tests/test_shed_retry.py
tests/test_stages.py
tests/test_surface_examples.py
tests/test_surface_walker.py
tests/test_upgrade_check.py
tests/test_version_parity.py
tests/test_warning_literals.py
tests/test_write_message_rule.py
tests/test_xml_replace.py