Metadata-Version: 2.1
Name: cellfinder-napari
Version: 0.0.4rc1
Summary: Efficient cell detection in large images
Home-page: https://cellfinder.info
Author: Adam Tyson
Author-email: code@adamltyson.com
License: GPL-3.0
Project-URL: Source Code, https://github.com/brainglobe/cellfinder-napari
Project-URL: Bug Tracker, https://github.com/brainglobe/cellfinder/issues-napari
Project-URL: Documentation, https://docs.brainglobe.info/cellfinder
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Framework :: napari
Classifier: Topic :: Software Development :: Testing
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Operating System :: OS Independent
Classifier: License :: OSI Approved :: BSD License
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Requires-Dist: napari
Requires-Dist: napari-plugin-engine (>=0.1.4)
Requires-Dist: napari-ndtiffs
Requires-Dist: brainglobe-napari-io
Requires-Dist: cellfinder-core
Provides-Extra: dev
Requires-Dist: black ; extra == 'dev'
Requires-Dist: pytest-cov ; extra == 'dev'
Requires-Dist: pytest ; extra == 'dev'
Requires-Dist: gitpython ; extra == 'dev'
Requires-Dist: coverage (>=5.0.3) ; extra == 'dev'
Requires-Dist: bump2version ; extra == 'dev'
Requires-Dist: pre-commit ; extra == 'dev'
Requires-Dist: flake8 ; extra == 'dev'

# cellfinder-napari

[![License](https://img.shields.io/pypi/l/cellfinder-napari.svg?color=green)](https://github.com/napari/cellfinder-napari/raw/master/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/cellfinder-napari.svg?color=green)](https://pypi.org/project/cellfinder-napari)
[![Python Version](https://img.shields.io/pypi/pyversions/cellfinder-napari.svg?color=green)](https://python.org)
[![tests](https://github.com/brainglobe/cellfinder-napari/workflows/tests/badge.svg)](https://github.com/brainglobe/cellfinder-napari/actions)
[![codecov](https://codecov.io/gh/brainglobe/cellfinder-napari/branch/master/graph/badge.svg)](https://codecov.io/gh/brainglobe/cellfinder-napari)

This package implements the cell detection algorithm from 
[Tyson, Rousseau & Niedworok et al. (2021)](https://www.biorxiv.org/content/10.1101/2020.10.21.348771v2) 
for [napari](https://napari.org/index.html), based on the 
[cellfinder-core](https://github.com/brainglobe/cellfinder-core) package.

This algorithm can also be used within the original 
[cellfinder](https://github.com/brainglobe/cellfinder) software for 
whole-brain microscopy analysis.


