LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
dependencies/dep_here
dependencies/Darwin/dep_here
dependencies/Linux/dep_here
extra/PeakAnnotator.jar
extra/logo.css
extra/logo.pm
extra/seqlogo
extra/template.eps
extra/template.pm
extra/templates/haystack_logo.png
extra/templates/noise.png
extra/templates/report_template.html
gene_annotations/bosTau7_genes.bed
gene_annotations/bosTau7_genes_id_to_names
gene_annotations/galGal4_genes.bed
gene_annotations/galGal4_genes_id_to_names
gene_annotations/hg19_genes.bed
gene_annotations/hg19_genes_id_to_names
gene_annotations/hg38_genes.bed
gene_annotations/hg38_genes_id_to_names
gene_annotations/mm10_genes.bed
gene_annotations/mm10_genes_id_to_names
gene_annotations/mm9_genes.bed
gene_annotations/mm9_genes_id_to_names
genomes/put_here_the_genomes_from_ucsc
haystack/__init__.py
haystack/bioutilities.py
haystack/external.py
haystack/haystack_common.py
haystack/haystack_download_genome_CORE.py
haystack/haystack_hotspots_CORE.py
haystack/haystack_motifs_CORE.py
haystack/haystack_pipeline_CORE.py
haystack/haystack_tf_activity_plane_CORE.py
haystack/system_env.pickle
haystack_bio.egg-info/PKG-INFO
haystack_bio.egg-info/SOURCES.txt
haystack_bio.egg-info/dependency_links.txt
haystack_bio.egg-info/entry_points.txt
haystack_bio.egg-info/requires.txt
haystack_bio.egg-info/top_level.txt
motif_databases/FACTORBOOK.meme
motif_databases/FACTORBOOK_mapped_to_gene_human_mouse.txt
motif_databases/JASPAR_CORE_2014_vertebrates.meme
motif_databases/JASPAR_CORE_2014_vertebrates_mapped_to_chicken.txt
motif_databases/JASPAR_CORE_2014_vertebrates_mapped_to_cow.txt
motif_databases/JASPAR_CORE_2014_vertebrates_mapped_to_gene_human_mouse.txt
motif_databases/JASPAR_CORE_2016_vertebrates.meme
motif_databases/JASPAR_CORE_2016_vertebrates_mapped_to_gene_human_mouse.txt
motif_databases/JASPAR_CORE_REDUNDANT_2016_vertebrates.meme
motif_databases/JASPAR_CORE_REDUNDANT_2016_vertebrates_mapped_to_gene_human_mouse.txt
motif_databases/MAP_MOTIFS_TO_GENES.ipynb
motif_databases/.ipynb_checkpoints/MAP_MOTIFS_TO_GENES-checkpoint.ipynb
precompiled_binary/Darwin/bedGraphToBigWig
precompiled_binary/Darwin/bigWigAverageOverBed
precompiled_binary/Linux/bedGraphToBigWig
precompiled_binary/Linux/bigWigAverageOverBed
test_bed/Background_for_H1hesc_H3k27ac.bed
test_bed/Regions_specific_for_H1hesc_H3k27ac.bed
test_bed/test_haystack_motifs.sh