smftools/__init__.py,sha256=PTm1BVQrDbS6SrZK0z4hIP_OLNpM5AmkdxoF5kjakY8,3099
smftools/_settings.py,sha256=QqZzjz6Y_-gZH4VJAPRCL68HRlGjzl3hXU7d-dMi8-M,418
smftools/_version.py,sha256=V43ssWc2auuTN96mFIruHw1_V-DPZeADh-zWsBPPSHw,59
smftools/cli_entry.py,sha256=2YexXGGLT4GQ4iF7j3Zj02jkgAnV6PbuwyRMOx6lVjw,42971
smftools/constants.py,sha256=emw1pexPpGripw_GeFien-UeZwJXTKM3TGhR_x_4zXI,8785
smftools/latent_model_artifacts.py,sha256=UmYreGCBhOP9WOK27KxKd8PNnRoBAoldSOWd2j9Ppac,12318
smftools/latent_resource.py,sha256=smIaV-gI2NVlkz961OOK7UbZUI-rQrsMAUGItRGUl8Y,13557
smftools/logging_utils.py,sha256=ed77bHMhL0i5xvQmi2pbpcPkyhz-hGYMqdjhH1zaTN8,7617
smftools/memory_guard.py,sha256=2j1CSwCix5pbZhBSM0Tcoh3Pkp3t3vq0US5Oz4ocTx4,52136
smftools/metadata.py,sha256=-U8jVzjBsXbZ2SKRcyPHMCDPnsQQRR4djzerjpeQvzU,14917
smftools/optional_imports.py,sha256=PpjWa-H-rlxwXJjkPLSHkiuim922xwDVsqlgFY8wWqw,1039
smftools/parallel_utils.py,sha256=vIURj7FUSWg-W6sWITrUtSdm3N1Ji6VlyevmdyfYhiU,3918
smftools/perf_log.py,sha256=eAMLWsGWhuJ2Tm4TnQ-6_mGt6HnsS3_Vudm9gpXYlww,19903
smftools/readwrite.py,sha256=o-8tvQxHRmUjoSV_lQdukd4MT60APjI5GWviQxvqb7w,74258
smftools/analysis/AGENTS.md,sha256=j2I1jQ6LL7gUqtR7dRfYv-H6FrHmrIFVqz6_Hiympxw,4391
smftools/analysis/__init__.py,sha256=a_IhXbQIriQp4rkcUEwMP7czF6ENRq4nYPx6yIPzQz8,904
smftools/analysis/compute/__init__.py,sha256=rcGQHqAQc8n_2HEMlGxgTsW1UKEo4YzB_lAKLa1ZjyA,1418
smftools/analysis/compute/autocorrelation.py,sha256=afanz6Cao9NJoguZJbiwNqZ-N4LPMTz-yd2_9r0QKPU,11266
smftools/analysis/compute/clustering.py,sha256=icaSogtxfIsMkIBBms2D9FmI1jeycJZHKqUvqClPT7o,3265
smftools/analysis/compute/dimensionality_reduction.py,sha256=I7u3hPpVIDFCvCz6njNMG_gXuHp5Cq5gRbUh1sce6Go,12517
smftools/analysis/compute/ep_classification.py,sha256=R0hKn1MFTmbYfDX5dlbtQ5homfNGOFbsVtnXSkqMFec,4237
smftools/analysis/compute/hmm_features.py,sha256=qSSrqusxvnT0_1_bo-s0RPITcdgA5dUBi3sdjMpxMjA,2922
smftools/analysis/compute/ls_periodicity.py,sha256=X4L8b8r_vAoBa2e3e3GeYE0Pi848Q4E6aqCLvM5oNBE,13032
smftools/analysis/compute/metrics_store.py,sha256=bQ4Q_twFvSNvS3wHaInGWLT9nDfFBoVWCpBi92NVJqM,2743
smftools/analysis/compute/ml_cnn.py,sha256=erQt4HVMKkcvnyiZ3jitg3DKVP6ZX8nV9x8vxbREVpQ,19997
smftools/analysis/compute/ml_explanations.py,sha256=q_KaP3CRPLd4CtOrxaQAKBJX11b9UoSkQ9JQX9F0yfU,5096
smftools/analysis/compute/ml_metrics.py,sha256=CiBPNh1EnQEMZulz5EUl1ziV2Fj5eFYCeh8HZYTiFXI,7424
smftools/analysis/compute/ml_splits.py,sha256=UqCyQk7abSyCvY7soy5wlbb4Du1n4FbpQV8sTPuUO2U,3813
smftools/analysis/compute/pearson.py,sha256=_hDA-U0mEFbvC4d9QCrfbasJ7NrI8vlt7oQASf8Mdsk,1684
smftools/analysis/compute/read_cache.py,sha256=dWY_04fzC61n9f-0uxOsIAawStGTlZ2E16_xOGPlLPk,13740
smftools/analysis/config/__init__.py,sha256=JW2Kyzw1rBrUIyWW-MlBAXecoDFjclgVZplfLg_QNtY,259
smftools/analysis/config/hmm_histogram.py,sha256=8bTEG0ggSjvfSisCGmEsKCVDnAguSWlPxyTY3aAJZV4,2917
smftools/analysis/filters/__init__.py,sha256=AMOVvxi8K1ViZghFFNsMR_iXy_6fMD1tmfy1eEAuigI,235
smftools/analysis/filters/obs_filters.py,sha256=YevCny5umDnpUHm4F5ai2gwJsMvdmHd9yfAUg37ng_0,3399
smftools/analysis/filters/position_filters.py,sha256=WOiNr2yDp2s-s3DvxDelFfdUswCvSXOw5LZAykkqFjE,1187
smftools/analysis/plot/__init__.py,sha256=-kbKtI7sAmp0Sxoqx2q8ApAE4ltqPpghjOUapT3Hx8c,729
smftools/analysis/plot/autocorr.py,sha256=kPIi3tNmueMXx5O4agaK52ioAEpvKaVIOrHqsZHzaGo,16173
smftools/analysis/plot/embeddings.py,sha256=p0VLNQh9OKPhyTZK2WYmaLgafpn33Nmi1xwbAabZnFA,22893
smftools/analysis/plot/heatmaps.py,sha256=XMdIB4GAn0zrm4xSGHukQJCXBHKvzLSsveE66EGKhlc,2006
smftools/analysis/plot/histograms.py,sha256=xGykGiIojz-2CWRiA7NuW9jz1zC4HYvaPM07OQHcOMY,9089
smftools/analysis/plot/locus.py,sha256=Bxq9OZ-vP-2qVtY5TWzYIeiP8l0pPXDgfhcNgWtRztE,307
smftools/analysis/plot/ml.py,sha256=AIViLEy1jdxPK8QqpCubev78ouPxxa1Siz48_mSy1ek,23108
smftools/cli/AGENTS.md,sha256=Ap_vMo4pVc8q8alYlgUNnPRtyQHXfNSnQleXMlUNEP8,4030
smftools/cli/__init__.py,sha256=U4S_2y3zgLZVfMenHRaJFBW8yqh2mUBuI291LGQVOJ8,35
smftools/cli/batch.py,sha256=t8UIJVMyki36m-FEZlcgiK0P0wsIP1cjiCiyd0vd5HE,5572
smftools/cli/chimeric_adata.py,sha256=GxR9bGsgmXHif6_wymAZegHdvUAexip47KnsTzTe1v4,74614
smftools/cli/export_fastq.py,sha256=X3voYo87-uTH5wVIfZGj0vo29TomNx4j7Oi4or69XEM,10050
smftools/cli/helpers.py,sha256=MhLrfy6OUIFwOR0UkPQHEmTt7dA4iNDxl0veCPP4zP0,26478
smftools/cli/hmm_adata.py,sha256=VXH6xiO9EVtB6J9k8__OpKYxO74S7CqHZhgjAvYxYAQ,63879
smftools/cli/latent_adata.py,sha256=_FFb5U3Du8-B9C2VkHgM1l0jEFYMj71SAPTEFOAR5a8,34689
smftools/cli/load_adata.py,sha256=4-EgAJTPsJ9U7uJ9x4VYs9LStNrgMb-rsXt8cOTIOy0,73025
smftools/cli/plot_current.py,sha256=_y7GOkZ70VgxTmZwxOM3Prt2xYz0EJVmFVNRMygkLG4,2097
smftools/cli/preprocess_adata.py,sha256=P9vby-QpP2k0Q2RYoY6j6zEqBdtK5mkr3NyH4tCRr3E,38053
smftools/cli/project_cmd.py,sha256=_owfzXjEdfWlMn6nm2NmFvHDoqqWkImtMROKImBIzqQ,8768
smftools/cli/raw_adata.py,sha256=Ymdk4iwBrPGAG8qVVxvQwsFu6cwlF0WSi6pIZiXIYKI,76127
smftools/cli/recipes.py,sha256=EB7JVOjuLiQsCwToEsr11ucYAQ34uI-5dIUaEJ2IBEU,7554
smftools/cli/spatial_adata.py,sha256=Niv0Syo5mhEXohTOd-iSU6U2Nfsi9Exn3za_eP89G8E,36498
smftools/cli/stage_artifacts.py,sha256=oy1FovuV0FGUHJ6N3G5ungwBEanb7BzT3nPbmfhOZt4,7088
smftools/cli/stage_input.py,sha256=ZZ-DWmtKxCuK2JE_bTXfjyEZnYc3RqDQV5phaQFBkuI,5278
smftools/cli/variant_adata.py,sha256=m7ziUUBpP4RbvyNv-B2w5H5Dqt8sz8VGZwu50uB1JXs,34930
smftools/cli/workflow_contract.py,sha256=M0JIAJZd128bvr2IhWc2_82x3ILh6a_cX04HivFQyRk,48803
smftools/cli/archived/cli_flows.py,sha256=w1rPHSH8WzZn7owz0ra7WOUGlJSEsaRw_W3x-9Ra42k,4977
smftools/config/__init__.py,sha256=rcI3qG1DGfRcvQzh8bffiHuRPcmPsas5T8MN6uhScxA,106
smftools/config/conversion.yaml,sha256=vlg_aejb1yrivDnUjWqbV6VSM-OPOCdyt8Wr295OAqQ,1532
smftools/config/deaminase.yaml,sha256=Q0cV-eNiBPJudfS9dsfgCQrLYqjlJOyzPNz7kDgZwV4,1676
smftools/config/default.yaml,sha256=WmPX8tlEu7fRp42z9n6fAURMbzkTZLuh_FHnLc6o3Aw,33171
smftools/config/direct.yaml,sha256=tPy2MpLKvrIqjDFl1oBxY1l5ev8qJiJ_Kzjfgd4xkQI,2785
smftools/config/discover_input_files.py,sha256=9giXvREr80sLF0lYDnfKR9kbc3WPhV2E8oZnwvwCPhU,4025
smftools/config/experiment_config.py,sha256=2BIakD7ASBIpUs_lzfxdDFne6obhQSCKOm33_mnS1_g,128597
smftools/config/barcodes/SQK-NBD114-24.yaml,sha256=nSJLs1Bgi__Y6rucr8UQ5l7RdibaA0EzYI14Mf_DMgE,1023
smftools/config/barcodes/SQK-NBD114-96.yaml,sha256=CHl4fC0Buzyzb1R59xVY2z-s5hF1DrXTYo9eNaL3Q_k,3399
smftools/config/barcodes/SQK-RBK114-24.yaml,sha256=V0F7dS5QeJ7-zcrMiUkY_8RKnZK2QKKOr2u2dCp0-nk,1080
smftools/config/barcodes/SQK-RBK114-96.yaml,sha256=R3Ezes3xFbYONAoZZsSnB0k1_-P_BkCWmisQqfUlFuc,4036
smftools/config/umis/dual-nextera-12.yaml,sha256=YL8gRVpvXGr5OrHC_FZJj8wbk1iWwVcEPZ0hcqF_obI,205
smftools/datasets/F1_hybrid_NKG2A_enhander_promoter_GpC_conversion_SMF.h5ad.gz,sha256=q6wJtgFRDln0o20XNCx1qad3lwcdCoylqPN7wskTfI8,2926497
smftools/datasets/F1_sample_sheet.csv,sha256=AJu9-ZXDv32gZmavL6h29usgHDKGamBD7xb__u4E09w,255
smftools/datasets/__init__.py,sha256=_G08ZAMlA9zpY5UjWTVlpAbW2YPS4PLCmz5g1pZdcCw,157
smftools/datasets/dCas9_m6A_invitro_kinetics.h5ad.gz,sha256=niOcVHaYY7h3XyvwSkN-V_NMBaRt2vTP5TrJO0CwMCs,8385050
smftools/datasets/datasets.py,sha256=-VOdONP-K_ftLDtLktRKbq3S6vSB4pzRQ6VYBxAy_4A,1074
smftools/hmm/HMM.py,sha256=8Jz5xxfqdHhU6Xw6PiIxJqf2Shld5Oi-LllFbt1woi8,88312
smftools/hmm/__init__.py,sha256=vs-fjo-v9y8EwdoErK6KDBm-YzD_XmTtflsdTJlRgTg,746
smftools/hmm/call_hmm_peaks.py,sha256=apx3XdPbiAmddmUd8TlilkeBrUFTcb43zEhILZbWVo8,9364
smftools/hmm/display_hmm.py,sha256=N94hmEKZGehPdsB9yLyY7U1_tTWDk2NTMU-PuWnEQqA,1321
smftools/hmm/fit_plan.py,sha256=8W1uVDL8hYnvhMcH_UMgOgMvkq6jQYTZdxi5yJnLbfw,11087
smftools/hmm/hmm_readwrite.py,sha256=n-ok3wH1-anSn90vEA91jWKRbtq0bxM66hp2eYoWk34,687
smftools/hmm/model_artifacts.py,sha256=msV80JscQCRtE0tYZbWMph-DBF3jqd4qVjqacphdTa4,13529
smftools/hmm/nucleosome_hmm_refinement.py,sha256=lHB6XVJWhwN-jR1TjBOMIOBQ5soncAJbv3djbkyH1NU,6882
smftools/hmm/archived/apply_hmm_batched.py,sha256=W2-qx1XbcDJz4q38YCxb1eQn9h-hqAbFwDNK9SpGiw4,10684
smftools/hmm/archived/calculate_distances.py,sha256=MfBhXZNkjQvu9Y8LVMDpiQ4aS9uyfa4TUQbLGjQ1aM0,680
smftools/hmm/archived/call_hmm_peaks.py,sha256=6SklWXCn4H8LnlGvBncIsLhnf2gaNy8Qro_jxGJn7I0,5249
smftools/hmm/archived/train_hmm.py,sha256=sYF4RTEKPhE6MwK2eTAv4ghf-f7_33-FvhwUG6tegTU,2513
smftools/informatics/__init__.py,sha256=LJIU9xk8c-QhLKEB2ogcWMESs-hKN_645780Oal6Qvg,3618
smftools/informatics/alignment_rescue.py,sha256=0f0Vw_xwOhW3itz-TSBrq4aru0Cmulsab6DEWu3gddc,11882
smftools/informatics/analysis_region_plan.py,sha256=uSHMj8v5qU-5wNshrKhpG7-honyAjLrET8skbyvau_s,10724
smftools/informatics/artifact_paths.py,sha256=rZJkUz5oq2m4b39kPpkU8ZxQX-EQJfTGneAcjjed_kg,1167
smftools/informatics/bam_functions.py,sha256=5d-r5SshCcROfjjnkmfcbqBcMW5x4SOKrpEYBpSGx1A,190365
smftools/informatics/basecalling.py,sha256=o-oEa-sj73y_5bJyxQL5Iv6S3quqOBRn1mOPUOzodJo,4124
smftools/informatics/bed_functions.py,sha256=Ybmgl2j9zStv4_TvJkT96Q7fHlYGtjTw2Iy8cKrznZs,21366
smftools/informatics/binarize_converted_base_identities.py,sha256=AotMg75gmikiKvfUwgqFfbZ4n6xCe-OHNojo1LSe5bA,4035
smftools/informatics/complement_base_list.py,sha256=6DInlD4cdjKJmmUv4Cp4UU9HHLe60Pm8RF9AoBfBfF0,571
smftools/informatics/converted_BAM_to_adata.py,sha256=U7fqfJdblJuN80H65VJfSAw4of9vw3Lam2HLs1u2qCM,56132
smftools/informatics/derived_read_index.py,sha256=RaGxfywZK2zPE3J5wJfdhegXRcYsylgyMBYo33AngH4,10168
smftools/informatics/experiment_manifest.py,sha256=jLZ0UqVEadSZWoceagmMTPIJmPvuybqbzVlAHRSk69Q,13489
smftools/informatics/experiment_spine.py,sha256=KLfr4qj-pR_Ago-2c2sEo-NhMFVHzIPwrySjOUcQ9Mg,5433
smftools/informatics/fasta_functions.py,sha256=MD-fL0BkExiDXMUSPkHaHrkOK7aqzOozWREGr5Gzw8w,14111
smftools/informatics/fastq_export.py,sha256=Lsc6tTq6k3DqpRUHRidEtT9VvhUBvW7KJypgfmOBF9c,5768
smftools/informatics/h5ad_functions.py,sha256=SSIA6suR4j1COjhnxtNc57G9lwv0fvi1Yw0Rw2UlVTQ,28354
smftools/informatics/incremental_zarr.py,sha256=-NZv0bMM9yGz1vr0edYk6iG_EUcbfddNR22DWSa9-kk,5323
smftools/informatics/modkit_extract_to_adata.py,sha256=AcMQ8VEreObwMyVIkgmyxSzO2KuwZcpU_aBcUfOjYdo,128601
smftools/informatics/modkit_functions.py,sha256=pjCC-Ovvd2rakr14GAHEmmWsFJKPdRmk8pYuBFu8EVM,6350
smftools/informatics/molecule_identity.py,sha256=L8waOhJOi9HsT0ofFekdldWbLFDg1TmueCQ5SKJoY5c,2757
smftools/informatics/ohe.py,sha256=fdMEdXG45hiCsHtmYkPsXJKLJ-SBaZktdGx-bmfI3a0,5997
smftools/informatics/partition_query.py,sha256=1b5b9YO0JBQM6vpiSQotWvC36ccWBbAiN9QV4MOReww,8704
smftools/informatics/partition_read.py,sha256=kPImtY7-aQlPykeU-NCNsvnEmodZpTAKV9XYz-M45a0,44066
smftools/informatics/partition_store.py,sha256=bWv5Sxwgk-DnYK0L7lAtMc-yMNjU8ghsvYiJYvWN-dE,24929
smftools/informatics/physical_layout.py,sha256=vWL-KcpR8bLY823Yzg_C4lbw1BIz2czLJJMWPwvqEMc,1622
smftools/informatics/plot_region_stitching.py,sha256=z9NPT1NK0VBMDpwNsXR40GcSsjzzyMkaf8WArXvylQs,16144
smftools/informatics/pod5_functions.py,sha256=WIOQ6AnQjHVPBQ8S4cM8xht739n97sMSNYpFcYMwvg4,21575
smftools/informatics/ragged_store.py,sha256=gO3nqNgFGz_bMC7eCGkA1QFKqS18ZSb3sNXtChD_C2I,28287
smftools/informatics/raw_store.py,sha256=GNUdFVCJvyG2cHP9MByRRUZyF74nP1zKY-5WeAc6aU8,34895
smftools/informatics/reference_identity.py,sha256=8qYo1Z5ocN6VkJGu89EFdho3v1X7HRU1eCBaGP_C1EU,1242
smftools/informatics/region_catalog.py,sha256=dNo7ZbpksMR8at8jsL-AEQEx90xxjlWWwveLr-2_M2Y,19819
smftools/informatics/run_multiqc.py,sha256=0jPZtlowxUWrzWYCt_-AHKsneKQKs4PULFmMDnnWP14,2204
smftools/informatics/sequence_encoding.py,sha256=figT1CcIjnAcOC019t-dSn3jK7rsfrbNVPNCOrSmAoc,2890
smftools/informatics/sidecar_manifest.py,sha256=LIvOo7M_Kfdu-cjy7f4ioxi7CcTE065oFE1oJFExU7g,3172
smftools/informatics/signal_features.py,sha256=l-PAxIm161w2FC5IzkYGvKKrB2OXmzkjVxaXCRBC-h0,8063
smftools/informatics/stage_obs.py,sha256=fXIGO-RuTbAlUquR_4MtaTS501Wm-QnYzcsFKqhIR2E,3993
smftools/informatics/storage_planner.py,sha256=kBqsewo5b6NkcthhlSExIzKhTjypyEcEugy825V867s,3869
smftools/informatics/archived/bam_conversion.py,sha256=Gvy8X8AmCNYQEiwGjnmzs4YRMO3b5Cy6YDuVX8uLwJc,3366
smftools/informatics/archived/bam_direct.py,sha256=Dj0YGeQzPb2jdFdO6qW6gyTxgdfCHI_c-xpYUc2MARQ,3642
smftools/informatics/archived/basecall_pod5s.py,sha256=EAGHhKeCkFHybZmJrVR12kInnY5k0TXM__gLuplUOu4,3966
smftools/informatics/archived/basecalls_to_adata.py,sha256=sp9Lg8SVYMFzTmyL8AJNonzs77LUBgeyuCYEKUpX42k,3728
smftools/informatics/archived/conversion_smf.py,sha256=WizSqicLGNKXSKpy8BDhA0zau5Kp07zv4dZsasmbR-U,7213
smftools/informatics/archived/deaminase_smf.py,sha256=112-1F-xwR81uH713jDzdBXWmlZO0P10sCrFZrjgPCA,7256
smftools/informatics/archived/direct_smf.py,sha256=slFfojwKrZOOpiTXc52dSCmPATRkV754cmtdCbwWawY,7521
smftools/informatics/archived/fast5_to_pod5.py,sha256=5D1mcZ11WvQG0LFQAPzseaFxCkZOU4c3ShiIxexcda4,1434
smftools/informatics/archived/print_bam_query_seq.py,sha256=Dt0qfU6FU0qVoEBYhAd7C19Z_OexsD2YKx6aEIELcTk,1040
smftools/informatics/archived/subsample_fasta_from_bed.py,sha256=KsQ10HlsL86xhgqcSCCVTVyqzjGKaN78echFJNo_2t4,1669
smftools/informatics/archived/subsample_pod5.py,sha256=DLRUUBtvNRMkDc-ZHfvhXFFNbaUsdtmpr0Yxn8z5-fc,4737
smftools/informatics/archived/helpers/archived/__init__.py,sha256=U3l2rSkWBFXr_CH2l1tXSpizRoIxjVWpqS5zU2-xptE,2819
smftools/informatics/archived/helpers/archived/align_and_sort_BAM.py,sha256=62WEW3BvPQ1Dm1vhuO3_ADVSjO0Qe5fU8OJYX6UDFcM,5824
smftools/informatics/archived/helpers/archived/aligned_BAM_to_bed.py,sha256=I4RsezvaVxRWLkCM3n5ntGh5u0ixC8-0RW-2X4rbDGA,3427
smftools/informatics/archived/helpers/archived/bam_qc.py,sha256=r_NVoOnhDQp9sBOdLuqqSkR7rocSN0USOAcCfkBTtiQ,8482
smftools/informatics/archived/helpers/archived/bed_to_bigwig.py,sha256=gVTd542uxqzeb0qqR_MYdBHeVOvIrAdiEvQiDyrbv-g,3022
smftools/informatics/archived/helpers/archived/canoncall.py,sha256=0JC6rvUAkqqIafnA1tJmGr5lYO4-Epnlc88pur1CeFI,1777
smftools/informatics/archived/helpers/archived/concatenate_fastqs_to_bam.py,sha256=chc4yyrwuZVQewSDMFLHmphs6JovAIak4jvmGwUdQNQ,10237
smftools/informatics/archived/helpers/archived/converted_BAM_to_adata.py,sha256=EGhaftbGjhRLibTGKkQ9ngXYMcGnJfEOT2hZnH9ugLw,14627
smftools/informatics/archived/helpers/archived/count_aligned_reads.py,sha256=T3_KNtvf7CNL-Dr6JdnmfeJXf_0TTYHW80R7_0uFJSw,2212
smftools/informatics/archived/helpers/archived/demux_and_index_BAM.py,sha256=p9R4Imp6sSwGONkQnj3uespssIENQeW-3NzAFRYsWvg,2036
smftools/informatics/archived/helpers/archived/extract_base_identities.py,sha256=zrFXV2keqRxPJlpoRdT9Z4nrELb4ODUc2wx68OR57Ok,3079
smftools/informatics/archived/helpers/archived/extract_mods.py,sha256=6MMy-G_VNFwDSdzRoc-OJiCQ2FYyVejxUr6zZIpd-Dc,3931
smftools/informatics/archived/helpers/archived/extract_read_features_from_bam.py,sha256=F7f4hdA_6vMg9lCGVz49Sbo-eKAGpgfsm17nBVtSgTA,1527
smftools/informatics/archived/helpers/archived/extract_read_lengths_from_bed.py,sha256=pkk6PeNfAo1OHMMELF0MsIlL6E4tMO66czslVORaVzs,714
smftools/informatics/archived/helpers/archived/extract_readnames_from_BAM.py,sha256=3y2-u8dMoAdB2meycC7pTFQ_Mwesw9xnTtvfZtg9JPc,795
smftools/informatics/archived/helpers/archived/find_conversion_sites.py,sha256=VKqFabPqdwaXhVaRLbf7vOy9wAke-QYh2aZbYSlQuIA,2516
smftools/informatics/archived/helpers/archived/generate_converted_FASTA.py,sha256=n0eTfmMuInrfps_bZL4maCHznPEAjpEJzm6QMx719ZA,3855
smftools/informatics/archived/helpers/archived/get_chromosome_lengths.py,sha256=KWCu671FbaXNImI7bNB2PMYzuDinKxPzibM2tmoaVeM,1036
smftools/informatics/archived/helpers/archived/get_native_references.py,sha256=cEUIrVytDT2b8TikhYN0LD-lRhmLUR4fO2-rKDuEwyg,1017
smftools/informatics/archived/helpers/archived/index_fasta.py,sha256=yw4o_ZyB4_dOYk1eDcuQgW28PNpYzKo1Dtr57-3RFNc,815
smftools/informatics/archived/helpers/archived/informatics.py,sha256=oBwZYK5VyzcZq2dOe_bj26WeAiS3ETSQgoVCEwNYMhk,14608
smftools/informatics/archived/helpers/archived/load_adata.py,sha256=o81rKNBziO3tq70g4mA335Z3rkb47tag01dgGxTFYAw,33747
smftools/informatics/archived/helpers/archived/make_modbed.py,sha256=st9KCRQeqGz5cLQs3assW58Qixir38xCz57X3Z-X5jw,959
smftools/informatics/archived/helpers/archived/modQC.py,sha256=UvDEjWFtmNlnooJqpFpQxDdLJDKpL1vhTSeqfudc_f8,1087
smftools/informatics/archived/helpers/archived/modcall.py,sha256=8oq3yyaX4OUC0QpM3ulAqr3G83JYrkN_iBflYBuJNNg,1813
smftools/informatics/archived/helpers/archived/ohe_batching.py,sha256=3MiQ0jG4oBAGG_OXhyB4wK8nIYib-zP1ktCVBFzZrSQ,3011
smftools/informatics/archived/helpers/archived/ohe_layers_decode.py,sha256=b7qcPfQlVsdELxTpPgJKDP8ExHzZ2y78LkW1iNwNLwc,1078
smftools/informatics/archived/helpers/archived/one_hot_decode.py,sha256=P4Q3qQNJgpjZj90QIsXGrrGlWos4RCITvFA6a5ii4lQ,942
smftools/informatics/archived/helpers/archived/one_hot_encode.py,sha256=-XF7W300FDnIhHzpU9yInkkRqaDNcEqeGCSFl8WU2p4,2004
smftools/informatics/archived/helpers/archived/plot_bed_histograms.py,sha256=EGLGhE311_bqJjoUji-OC76YNq5ShmGoE-Jj2thpVT0,10066
smftools/informatics/archived/helpers/archived/separate_bam_by_bc.py,sha256=Bjgj0VsiX_yqWiUaZj8qyW4QF3CTXbsdSAzl03lVgT4,1836
smftools/informatics/archived/helpers/archived/split_and_index_BAM.py,sha256=X3ttYpnaMnf3jmbnOvFFmfzu25jIVcOwQ2mfsa5nijQ,1260
smftools/machine_learning/__init__.py,sha256=KsXx4KmwoBttbWjZbpgBXcslEKDJuGD2Xh9J4mBzln0,686
smftools/machine_learning/data/__init__.py,sha256=HHNNB0S-doKMW3L9Rtaz7PzNMsCYoBpacCWZfyEayVk,149
smftools/machine_learning/data/anndata_data_module.py,sha256=TkiTO-rngYGc3uXLIUNQxouuuqwcf6pl02nLB4KRW0c,11210
smftools/machine_learning/data/preprocessing.py,sha256=EWYWWp1HfVbEVZvClUcEB8BZWX97yzQcT59KyINOJlw,175
smftools/machine_learning/evaluation/__init__.py,sha256=7i2AWDMv3cSxAPRPGZKCXD9AJ9RMC7XxN9gVkaW7DLc,159
smftools/machine_learning/evaluation/eval_utils.py,sha256=ose14IPCkeiZvpbjogc1bOepkM7tagxwsAViT1N5r7I,1036
smftools/machine_learning/evaluation/evaluators.py,sha256=wbggnCWiViNRee_wNyJFooTxXOp1jPnZyoU8GY0ckKY,8625
smftools/machine_learning/inference/__init__.py,sha256=c-RGoMpW8B1PgHKAsVmgXuStBFUYQyhRpi-eB6zWb3M,209
smftools/machine_learning/inference/inference_utils.py,sha256=57_JcIVi8S3NAVqILi5rJ9abPWQp1-6x2Ll3mDu00CI,986
smftools/machine_learning/inference/lightning_inference.py,sha256=1axpyfnfJysWNpRoe6MiXpqxKUEifiASTSzv3kybKnA,2257
smftools/machine_learning/inference/sklearn_inference.py,sha256=vlI6nCxfCARTnHhJcUlQjEVbefCzZG7lbbM6CBepuvQ,1644
smftools/machine_learning/inference/sliding_window_inference.py,sha256=x0d4134iR6Mr2FdZlyrObM95fy2XM0vpLUMQvtExlPE,4465
smftools/machine_learning/models/__init__.py,sha256=oZCTXLpeqMhTaGAmZhYi91F148UYkS_ghvJnh80yjUA,479
smftools/machine_learning/models/base.py,sha256=WM47fmiYmIazo5yvphAka8r-3eb8XOs7fVjoiOj97ng,9547
smftools/machine_learning/models/cnn.py,sha256=KnwjrtEtblwxq3tDhXKL_VVeDhwBsaUBn1zxaGBAE5U,4585
smftools/machine_learning/models/lightning_base.py,sha256=hdFgRUj-r2bkb_zjYeAEryGrGbAAOQqypeSg7jJlY8o,14503
smftools/machine_learning/models/mlp.py,sha256=AfcL8tDPKhFATNwEbI8XDXz7OpFvtJViXEPjUUNMNso,994
smftools/machine_learning/models/positional.py,sha256=8EpNWWEpozN7XeU9GpV2wgNOGt2T7UQGE5Yr0SmrqXM,791
smftools/machine_learning/models/rnn.py,sha256=Ss1hfOIW-Ppctllu_10Fu0HH1w9jc93mCgU04xPqB0g,832
smftools/machine_learning/models/sklearn_models.py,sha256=8jm5C0dtGOwp-joVCcgRCFzZHgY4bX2F8VML3SqKyiU,10831
smftools/machine_learning/models/transformer.py,sha256=Xjmwno1RjPEuEemo5NKkvatjd9q0g-RKjwYI7ptLf00,10968
smftools/machine_learning/models/wrappers.py,sha256=71ppq58Kyss_i2yIHhj5vA0SsfNc8oCtH8LzuYofVlo,829
smftools/machine_learning/training/__init__.py,sha256=t1UjYKGngmgMcUCaVLDlL5QVyIILIkKSuqJQoeXpM0w,222
smftools/machine_learning/training/train_lightning_model.py,sha256=POq6Qds-Y1m3IRxBkvMcQBNYT0N156laqW5nVBBMpKo,4538
smftools/machine_learning/training/train_sklearn_model.py,sha256=zQ5SQpu_sl7IVcZ0yaelzN4WJLJjbo-DEGXsvRyOeUw,3147
smftools/machine_learning/utils/__init__.py,sha256=aiCNpHD08ENEBtz8jzDfVZ8cB7ef9uOE7YaOPDkQUYg,99
smftools/machine_learning/utils/device.py,sha256=2D5TF6DQIZKTcyNqIcJ7UMFeiWS_kCAvZUBK6XngCXk,432
smftools/machine_learning/utils/grl.py,sha256=ptr-08dRKAGBZ1cySy_B90GgMn5kXtNXlcUC4PJ5mNA,485
smftools/pipeline/__init__.py,sha256=jv8gzvptqbG31Ava8qrGjDCTocoevHCPF7KuAExunwg,2602
smftools/pipeline/analysis_registry.py,sha256=OGQCMiRrxKE44cEQzdJv2dy_CQhTx-iL1e9bSJS6njE,8090
smftools/pipeline/compatibility.py,sha256=vPGlHStK9RPH2hZNJNU1K4wolkJ7p4-FwG9K3PhMDOo,21243
smftools/pipeline/experiment_graph.py,sha256=_sh5pc9-1pIHTv_OlJiizjrnew9jlH4ix8M3FdO9aD0,24671
smftools/pipeline/project_graph.py,sha256=hjGxbZH8v_mxt0R-njdQKR-92ZxRZVRzTl1KOTsaz2w,17246
smftools/pipeline/semantic_graph.py,sha256=Lxl5HCrjcs1UKT_aK-PvKoY5R9ynQRe2tcIeslQ_ps8,22586
smftools/plotting/__init__.py,sha256=MvVVTDPZW8iZXBGBJNIDePTTJ63uZvBnU16IUieVrMg,3394
smftools/plotting/autocorrelation_plotting.py,sha256=ZRkhxLj8ZF1aFgER7xDQnlysgFcKPIcmtKnKMSQjwk8,31502
smftools/plotting/chimeric_plotting.py,sha256=j-TMqKg0bzt2Fssi89FWR04WvLYFGkMOyksjN9T-qjo,70200
smftools/plotting/classifiers.py,sha256=EouBhnrHbBbeL8mJZEPU3GbFyIO1p6aERp0FIqp-3j4,17362
smftools/plotting/general_plotting.py,sha256=Tj9_V27K0f4mymsNWfwRbgQkPwvgiyoDw7yzM8JVSRo,1809
smftools/plotting/hmm_plotting.py,sha256=JVUZpTM8sS3QvibRuv2hFMJ9zWH3Zn3I2m4yUUuhmgY,99026
smftools/plotting/latent_plotting.py,sha256=xOx5hIugTnEV3zGp1maawGUFvi5N3VwoRMbUrxcMiMQ,30009
smftools/plotting/plotting_utils.py,sha256=jzueV9hUh2Kc7iOdiuQwliRs0QtDU40x5lZ7u9eXWz0,12812
smftools/plotting/pod5_plotting.py,sha256=yKuqWQ0BlvdNZfXzKfa9mf3mUZLBObkv0jV14VEAroc,16243
smftools/plotting/position_stats.py,sha256=xcv9FwKOxF8Xw5UK829WxC2tcbnueH39kvdDyZeR8z0,19989
smftools/plotting/preprocess_plotting.py,sha256=31jQTje9rCrHG8my_VdzMip2i71NdRYlScAP3NOASfk,18698
smftools/plotting/qc_plotting.py,sha256=3uCkB75e8wqD70bziRMUrlQzLWstgK_fN_b5sd0881A,17077
smftools/plotting/spatial_plotting.py,sha256=X9JztZDGeWOP499wE462s8Cw30BRTvKaGgcJuAcPHPw,53482
smftools/plotting/umi_plotting.py,sha256=1To8m00G9gSWyeXnMI_UYzlLWA7RtaneME0htUAKOuc,3724
smftools/plotting/variant_plotting.py,sha256=L7jSh0sX9PMm-ATf-nRM0ENghsUAELat1cOneWkpANE,79627
smftools/preprocessing/__init__.py,sha256=BeLYV6MurH_3EU__slVlcAxmUnB3Z2iB1OpxTzbDOFA,4445
smftools/preprocessing/_bitpack_utils.py,sha256=sjBM5F3CNdp1PC9qIb2qN4GZyLtk2CAy1wJWg3j0j0o,4274
smftools/preprocessing/append_base_context.py,sha256=YE5VpWwPaQ2pE18hJEi59A3HF8jwpA5OD6l_3LP8RV0,8782
smftools/preprocessing/append_binary_layer_by_base_context.py,sha256=qwvR18IVf_RlSWJQTK2HWfWIOxWZ824AGqDd_mQ5TuI,7350
smftools/preprocessing/append_mismatch_frequency_sites.py,sha256=cB-lg8GEEoFu2ESSxCyVObIcuMZTFip4Es96a-EJQQ4,7446
smftools/preprocessing/append_sequence_mismatch_annotations.py,sha256=fePNEZG6E4TuFQscSRTFLfa8RWPZDoiy6yzeHtldqJU,6887
smftools/preprocessing/append_variant_call_layer.py,sha256=pMvRadqo7XUer0IbJI8MR6rf3OP6yvnBSlE2YAUDOXA,17822
smftools/preprocessing/binarize.py,sha256=eDFLybKKIF2wcrtN3JWVjeGXSUayezxLhX76UllAhVc,888
smftools/preprocessing/binarize_on_Youden.py,sha256=JexsasCp0DMLxTAllyz7MUSVTxNWcYiuiQF1NnTOoJw,5572
smftools/preprocessing/binary_layers_to_ohe.py,sha256=nYvAefdIKGj-JyNtBqHcekJKI4BI2CM9pN-Mq1BT-28,1931
smftools/preprocessing/calculate_complexity_II.py,sha256=iVh5BcLCPOndVeN4A7Gw74pMBa83UQuxtV5o_sVFUNs,10367
smftools/preprocessing/calculate_consensus.py,sha256=YbeHFwyhH8MIl_2Acdg5B3DOyFJW8hVqFCZQYSZTLAU,2382
smftools/preprocessing/calculate_coverage.py,sha256=HZ8rtEmb-z6XCr-EvMfl4rc_9nbTJRztyEk8xUg7feE,2777
smftools/preprocessing/calculate_pairwise_differences.py,sha256=BRht5E8BtmJp_mxUSH5WfguhXaYV1zdPXZQLL1Wu6lI,1799
smftools/preprocessing/calculate_pairwise_hamming_distances.py,sha256=86MioHtN6mpH04bj-3UNv2Vistglt8I0ZMALKNEAq7g,999
smftools/preprocessing/calculate_position_Youden.py,sha256=RzPbVTB8EvnGSIjZ8V5yLEALgrG8zghqZVJZW6et5YA,9582
smftools/preprocessing/calculate_read_length_stats.py,sha256=y2R5lU6ObRBCAhSHKLEZYpgm88woPd9d15NWVthIi_A,4790
smftools/preprocessing/calculate_read_modification_stats.py,sha256=dc8QWwGqctnk6xbTNUaFy_uA4gg8ZaM6fN_KvEyzm64,5555
smftools/preprocessing/clean_NaN.py,sha256=opBnML49ReLfmAOMnWeR8xTEeEQqCKaX4hu3hxN3OgQ,6852
smftools/preprocessing/dispatch_plan.py,sha256=-OxoHAYgP_3IUInu39UZXdIC47YJOVmPksBICoDDAmg,8095
smftools/preprocessing/duplicate_detection_dispatch.py,sha256=USgeZPlLghGDErgamf3nUfnWbEbPgr5foSk2GpotBPs,16173
smftools/preprocessing/filter_adata_by_nan_proportion.py,sha256=5V1PNJISYm92QtEGmS9XSqx456Ult8RY8LMBclNylno,1490
smftools/preprocessing/filter_reads_on_cigar_indels.py,sha256=kuW1oy6n3GdtzSmJCfkLE7YeDq_s5sS_t5KsMYq3U18,3303
smftools/preprocessing/filter_reads_on_length_quality_mapping.py,sha256=gEDapZFrH6a1DRrzMoVWFBwZxHgei2C0YYhTeVNxCxM,11420
smftools/preprocessing/filter_reads_on_modification_thresholds.py,sha256=yxYZB9Ran1ZxuZm9iHi5bpLo6xcro5zKyv9rnYUtT6g,21688
smftools/preprocessing/flag_duplicate_reads.py,sha256=bTmeP7Mlx2_KG08YVGQWsoiCr_tR0O0VZAD2ajg_rGQ,80466
smftools/preprocessing/invert_adata.py,sha256=3LUK6gaBUtwvqkrtJSC8pCOptkIyiZKQXseo-_ON8Cg,2024
smftools/preprocessing/label_deaminase_pcr_chimeras.py,sha256=FcDTTfWc3UwKILsm0NGFeg-njr2rEvVq6V8Ll2CobvE,5348
smftools/preprocessing/load_sample_sheet.py,sha256=G89ymAUKP4aF4e08YDq_Of9yxl2QYfgdpoq0tb9R1z4,2450
smftools/preprocessing/make_dirs.py,sha256=SjeiXoWsy_SldM-RoQbpfo2mXdnP78xhHVHywTD7IZI,662
smftools/preprocessing/min_non_diagonal.py,sha256=2sOWl7zKWltNmv-Jv-ZXb099dYBX28suAOE6DUlUO-U,749
smftools/preprocessing/partitioned_executor.py,sha256=brMdVrnMSBrIGPrI2spp5pzv524R2AgTqz-WALdn6Z8,58797
smftools/preprocessing/partitioned_plots.py,sha256=7ZsY9rQWu3zNFn7qYyAby1DU6xf42GfC4Q0fXIP0qrY,29852
smftools/preprocessing/partitioned_variant.py,sha256=cg1MBPBD7hj62qMgCyJT0VSjw-d9HHY_eWKjbb-1vC4,29078
smftools/preprocessing/preprocess_generation.py,sha256=lXcqrfCe7k4I3UqrR6GCT04QkNrLyW1FPr8r-ujb93g,29101
smftools/preprocessing/preprocess_umi_annotations.py,sha256=MiMmQloe6KdvCvTCzKpnmc2zOwmQClKIPJ5OAejKAT0,33751
smftools/preprocessing/recipes.py,sha256=2IcPTSaiZb5_heWPxFsp5t6wqrCT-66zSQN6TI8S6jI,7169
smftools/preprocessing/reindex_references_adata.py,sha256=eXiWQlluS2Ba4uTWxxvVBH7sDAEKa05DlwTq62ISNTA,6979
smftools/preprocessing/semantic_upgrade.py,sha256=vDl7Usw5JLRV5KdIxnC534nw60ARpJq39UuGJOHCd9U,29318
smftools/preprocessing/subsample_adata.py,sha256=G9tCpDw5mZ-W4oKgjZr_kXy9CGnnzVmchtQ8WLQYSc8,2525
smftools/preprocessing/umi_bipartite_analysis.py,sha256=zI62cWAT7RuLy_d4MVqKbPMRot1TvWP_BvHF80M2Qgs,6436
smftools/preprocessing/variant_evidence.py,sha256=wANI73bKldQkjO_QZoSTqUW8yWHwDPQOt2TjZzvf4jQ,13888
smftools/preprocessing/variant_metrics.py,sha256=h6SW4qJUokpriKRU9EEV3nDtsyMoaBnxYsftCtDnYz8,16928
smftools/preprocessing/variant_reference.py,sha256=NA2RwlYeGd6gWYZYmRdJealpgvh6SXCn2cLj-72thtU,19234
smftools/preprocessing/variant_reporting.py,sha256=ju2jrBIcd9v83IAtwRPwbzoPsGAncStB76jFUZmNyYY,9083
smftools/preprocessing/archived/add_read_length_and_mapping_qc.py,sha256=OPLoxI17sg5revcaZ50KbPgLGO6ZCaGjychSHwQyd9U,5736
smftools/preprocessing/archived/calculate_complexity.py,sha256=fnaudGVLZPE-1dissVw3l5CAj5zUyOYzjU8Xb81DLL4,3456
smftools/preprocessing/archived/mark_duplicates.py,sha256=Acj27Xc8ht8e1HYZFgq57z7yLZi-IUAxHqqg8xRuZeE,8783
smftools/preprocessing/archived/preprocessing.py,sha256=l0Im9O45kaMYxipyFiPFBA8M7NLiOxWuONf8igmHaPc,34567
smftools/preprocessing/archived/remove_duplicates.py,sha256=W1Y2ufD2nE9Tnx3NXpEPxso08tiV50iRy77_X3RZkyQ,735
smftools/project/__init__.py,sha256=UjbsCHQwSOrZxq8OcCNSAN_9tyidKyl9JAOAjcHHs24,453
smftools/project/catalog.py,sha256=6AjXMH_AiT0Dv4O6uAtLEaCxWWk2A33VmBeoDdIrXlc,34413
smftools/project/embedding_store.py,sha256=8PWnQlYh8tIGdqDM1ScH7lYeP4A47kvWCuSRWcTnqdA,31220
smftools/project/latent_store.py,sha256=p8Zi6FLCQCpzx7BfTeOf4a7ZfxHL0CVxmxBVxwih4g8,21361
smftools/project/reference_registry.py,sha256=2ugu986Levhv9JycNd5JHFc2ghplAVegFFGUSmRfBho,4175
smftools/project/registry.py,sha256=NcN3-wiUqm12w20Tmla6MPMqfN6dcoXzhdE-uucNkpk,24802
smftools/project/sample_analysis.py,sha256=yn4rU-utxcOYFdOk31c46eO0FnYmz5KUGNJ3MHhzlRo,17233
smftools/project/sample_store.py,sha256=3EaTX8NhwL1LMAGSsF10_0wXnp6aN0dPeHPUePwTC3Y,6435
smftools/project/scaffold.py,sha256=8HsHAAFd2Ziy1YMRJRPIveDFqZx75Gb2rL3g1qFdhQ0,9207
smftools/project/set_store.py,sha256=OfUM_wdURY21ssxi6I3diBmKviJWb_J5PVLCHBDS8c8,6623
smftools/schema/__init__.py,sha256=0chkz2Zc3UKSJO4m0MUemfs-WjGUSSghiuuFM28UvsY,293
smftools/schema/anndata_schema_v1.yaml,sha256=jYDiVQ736-UoL-esPS3_oC-Eq5FFpNjltXaVufgWNQs,10913
smftools/tools/__init__.py,sha256=40LW8N6CiQMyRkujbm12cCJf8X2PdqrLWYwFiFUeNbg,1650
smftools/tools/calculate_knn.py,sha256=pPnkZpbO6qUD0Te62kB1D_6f7Y5UzUnrIu7b_XhtVNg,3921
smftools/tools/calculate_leiden.py,sha256=48Y72NIzGb6yxtnUund7gS_2jIFro5lwJC0ycNOoAJI,1867
smftools/tools/calculate_nmf.py,sha256=E1SCqOycGAdPm_-VLauLtyy4fd5UaFKNiNlVK3nr8Lo,4577
smftools/tools/calculate_pca.py,sha256=4dm2sEDkKZhW9_0q1e2lfpr6zVgmUNNReuEyCWbOa3g,6444
smftools/tools/calculate_umap.py,sha256=D5kTWRR6VIvSXWH_6uWC8q8PSnnK5f1g3yN4xxzQXVE,3370
smftools/tools/cluster_adata_on_methylation.py,sha256=NsU11zFyBB_TZFdVZxjqeSZsiVZgb8iCXaOBY54FA9U,7684
smftools/tools/general_tools.py,sha256=XO8em-clV4onfbYEH6JTfNj3svLQnwBZ1Tja7s8qsXg,3260
smftools/tools/partitioned_hmm.py,sha256=0TwEvWPYWoh9S3J50F-f2t_Qy0pzV7UvbgShEmtCy3c,56140
smftools/tools/partitioned_latent.py,sha256=IRjPOVTLoOe44ROeBkO1K0e0TeZipwWO4U9r-5xfONI,90813
smftools/tools/partitioned_spatial.py,sha256=xURLJ43CECOLnLm0maVWJg5RZ0rSZxbTlPbbNaKJnxA,81147
smftools/tools/position_stats.py,sha256=LvlG-NUxNG7ksB-5aX2SkMw-EVi3p-QIoyJ5GUi70Jc,31385
smftools/tools/read_stats.py,sha256=dQIHeY6Osuok_pxjQl0orx5euVtsaN7Tk7JfLak5BKs,6665
smftools/tools/rolling_nn_distance.py,sha256=4LhHmOk7BBN-EiezQ8GZtomOkVoxaP8Nf5xvg88s3xI,34843
smftools/tools/sequence_alignment.py,sha256=KgnDC9Ve66v_xmb4rzGWHsGAlbrPi2K930sSx6NkGkA,4562
smftools/tools/spatial_autocorrelation.py,sha256=lzQi0WvGmxX6A4Vzo1FB7fp04N_4Rfpnz3AEWVPNR0A,25592
smftools/tools/subset_adata.py,sha256=6xPf6hyKcYwg4L2n0iCnz-Pl84fS4jLgxmD47J-OEco,1012
smftools/tools/tensor_factorization.py,sha256=8-tE5boQB6cpZ-MmPjDkrPGlkBvTyBsU2FBKwTB1q_o,7951
smftools/tools/archived/apply_hmm.py,sha256=b1DKT_02weiPgkfQ0_Zfk7wN8FRZAMeYvBe74H3QuDU,9357
smftools/tools/archived/classifiers.py,sha256=iKkK9UyEwEdNwLx-t_r52CURkP3iZ-pFwmQtXF_lnLY,42191
smftools/tools/archived/classify_methylated_features.py,sha256=uXWXl4t9cP4inRiSvL4MxGbwC2MxT5uT-D1FFdex8oE,2933
smftools/tools/archived/classify_non_methylated_features.py,sha256=vhfLbR5fqALps5HXxQ91x3lUTGLcfciaEsQkSFeLOgM,3292
smftools/tools/archived/subset_adata_v1.py,sha256=CBTbHolOil7m4eR0bwIzxS7ZPvo3hmDsPVZGUBzWYrs,1361
smftools/tools/archived/subset_adata_v2.py,sha256=npic7cuFIOeUiyRjATVrP4A0O7cV0EgHvRXi9aMMOcI,2311
smftools-2.18.0.dist-info/METADATA,sha256=S2qhWzwMpxeRetuopy7TOlPIXqat0QL-x_iba-dyMr4,13798
smftools-2.18.0.dist-info/WHEEL,sha256=lCkmxWfQsSc9CfIClYeavTdQeEX2toPqufh9gI35EQA,87
smftools-2.18.0.dist-info/entry_points.txt,sha256=q4hg4w-mKkI2leekM_-YZc5XRJzp96Mh1FcU3hac82g,52
smftools-2.18.0.dist-info/licenses/LICENSE,sha256=F8LwmL6vMPddaCt1z1S83Kh_OZv50alTlY7BvVx1RXw,1066
smftools-2.18.0.dist-info/RECORD,,
