README.md
setup.py
ecmpy/AutoPACMEN_function.py
ecmpy/ECMpy_function.py
ecmpy/__init__.py
ecmpy/get_ecGEM_onestop.py
ecmpy/model.py
ecmpy/prediction_for_input.py
ecmpy.egg-info/PKG-INFO
ecmpy.egg-info/SOURCES.txt
ecmpy.egg-info/dependency_links.txt
ecmpy.egg-info/not-zip-safe
ecmpy.egg-info/requires.txt
ecmpy.egg-info/top_level.txt
ecmpy/__pycache__/AutoPACMEN_function.cpython-37.pyc
ecmpy/__pycache__/ECMpy_function.cpython-37.pyc
ecmpy/__pycache__/model.cpython-37.pyc
ecmpy/__pycache__/model.cpython-39.pyc
ecmpy/data/EC_kcat_max.json
ecmpy/data/all--radius2--ngram3--dim20--layer_gnn3--window11--layer_cnn3--layer_output3--lr1e-3--lr_decay0.5--decay_interval10--weight_decay1e-6--iteration50
ecmpy/data/atom_dict.pickle
ecmpy/data/bigg_models_metabolites.txt
ecmpy/data/bond_dict.pickle
ecmpy/data/edge_dict.pickle
ecmpy/data/fingerprint_dict.pickle
ecmpy/data/gene_abundance.csv
ecmpy/data/iBsu1147R.xml
ecmpy/data/iCW773R.xml
ecmpy/data/iML1515_new.xml
ecmpy/data/reaction_kcat_MW_template.csv
ecmpy/data/sequence_dict.pickle
ecmpy/model/iML1515_irr_enz_constraint_adj.json
ecmpy/script/00.Model_preview.ipynb
ecmpy/script/01.get_reactiion_kcat_using_DLKcat.ipynb
ecmpy/script/01.get_reaction_kcat_using_AutoPACMEN.ipynb
ecmpy/script/02.get_ecModel_using_ECMpy.ipynb
ecmpy/script/03.ecModel_calibration.ipynb
ecmpy/script/04.ecModel_analysis.ipynb
ecmpy/script/05.ecModel_ME.ipynb
ecmpy/script/06.One-click_modeling.ipynb