.gitignore
CHANGELOG.rst
LICENSE
MANIFEST.in
README.md
environment.yml
example.py
pyproject.toml
requirements.txt
setup.py
docs/notes.md
docs/pathing.md
docs/plotting.md
docs/readme_figure.ipynb
docs/tutorial.md
docs/manuscript/tskit_arg_visualizer_manuscript_figure.ai
docs/manuscript/tskit_arg_visualizer_manuscript_figure.eps
docs/manuscript/tskit_arg_visualizer_manuscript_figure_final.eps
docs/manuscript/tskit_arg_visualizer_manuscript_figure_final.png
docs/manuscript/tskit_arg_visualizer_manuscript_figure_final_simple.eps
docs/manuscript/tskit_arg_visualizer_manuscript_figure_final_simple.png
docs/manuscript/tskit_arg_visualizer_manuscript_figure_final_simple_v2.eps
docs/manuscript/tskit_arg_visualizer_manuscript_figure_final_simple_v2.png
docs/manuscript/tskit_arg_visualizer_manuscript_figure_final_v2.eps
docs/manuscript/tskit_arg_visualizer_manuscript_figure_final_v2.png
docs/manuscript/tskit_arg_visualizer_manuscript_figure_final_v3.eps
docs/manuscript/tskit_arg_visualizer_manuscript_figure_final_v3.png
docs/manuscript/tskit_arg_visualizer_manuscript_figure_v4.png
docs/manuscript/Figure1/A/README.md
docs/manuscript/Figure1/A/end.svg
docs/manuscript/Figure1/A/start.svg
docs/manuscript/Figure1/A/view.py
docs/manuscript/Figure1/B/README.md
docs/manuscript/Figure1/B/arg2trees.py
docs/manuscript/Figure1/B/duffy_100.ai
docs/manuscript/Figure1/B/duffy_100.png
docs/manuscript/Figure1/B/duffy_100_bw.ai
docs/manuscript/Figure1/B/duffy_100_ts.svg
docs/manuscript/Figure1/B/out.1000.arg
docs/manuscript/Figure1/B/out.1000.sites
docs/manuscript/Figure1/B/out.1000.trees
docs/manuscript/Figure1/B/view.py
docs/manuscript/Figure1/C/ARGviz-XA.json
docs/manuscript/Figure1/C/large_arg.py
docs/manuscript/Figure1/C/positioned.py
docs/manuscript/Figure1/C/small_arg.py
docs/manuscript/Figure1/C/view.py
docs/manuscript/old/example_tree.svg
docs/manuscript/old/tskit_arg_visualizer_manuscript.ai
docs/manuscript/old/tskit_arg_visualizer_manuscript.ipynb
docs/manuscript/old/tskit_arg_visualizer_manuscript.png
docs/manuscript/old/tskit_arg_visualizer_manuscript.svg
docs/manuscript/old/tskit_arg_visualizer_manuscript_figure-01.png
docs/manuscript/old/tskit_arg_visualizer_manuscript_figure.png
docs/manuscript/old/tskit_arg_visualizer_manuscript_figure_v2.png
docs/manuscript/old/tskit_arg_visualizer_manuscript_figure_v3.png
images/arg_visualizer.png
images/bifurcation_middle.png
images/bifurcation_node.png
images/recombination_node.png
images/stylized_arg_visualizer.png
images/tskit_arg_visualizer.png
images/presentation/svg_tree.svg
tskit_arg_visualizer/__init__.py
tskit_arg_visualizer/visualizer.css
tskit_arg_visualizer/visualizer.js
tskit_arg_visualizer.egg-info/PKG-INFO
tskit_arg_visualizer.egg-info/SOURCES.txt
tskit_arg_visualizer.egg-info/dependency_links.txt
tskit_arg_visualizer.egg-info/requires.txt
tskit_arg_visualizer.egg-info/top_level.txt
tskit_arg_visualizer/alternative_plots/edge_spans.js
tskit_arg_visualizer/alternative_plots/genome_bar.js