AUTHORS.rst
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pyproject.toml
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/developers.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/math.rst
docs/readme.rst
docs/running.rst
docs/usage.rst
docs/utils.rst
docs/_static/eigenfunction_0_best_voxel.png
docs/_static/eigenfunction_0_signal_intensity.png
docs/_static/eigenfunction_2_importance_map.png
docs/_static/similarity_p1_u1_t1e-3_l0_6_nb100.png
docs/_static/similarity_p2_u0_sk100.png
src/__init__.py
src/Neuro_fPCA_fMRI.egg-info/PKG-INFO
src/Neuro_fPCA_fMRI.egg-info/SOURCES.txt
src/Neuro_fPCA_fMRI.egg-info/dependency_links.txt
src/Neuro_fPCA_fMRI.egg-info/entry_points.txt
src/Neuro_fPCA_fMRI.egg-info/requires.txt
src/Neuro_fPCA_fMRI.egg-info/top_level.txt
src/fmri/__init__.py
src/fmri/b_spline_bspline.py
src/fmri/b_spline_skfda.py
src/fmri/evaluate_lambda.py
src/fmri/fmri.py
src/fmri/gcv_solver.py
src/fmri/pc_similarity.py
src/fmri/peaks_similarity.py
src/fmri/preprocess.py
src/fmri/represent_pc.py
src/fmri/similarity.py
src/fmri/utils.py
src/fmri/PCACorrelator/__init__.py
src/fmri/PCACorrelator/blocks_design.csv
src/fmri/PCACorrelator/classify_pcs.py
src/fmri/PCACorrelator/heatmap_design.py
src/fmri/PCACorrelator/regions_class.csv
src/fmri/PCACorrelator/regions_class_back.csv
src/fmri/PCACorrelator/regions_class_chatgpt52.csv
src/fmri/PCACorrelator/settings.py
src/fmri/PCACorrelator/output/best_pc_per_feature.txt
src/fmri/PCACorrelator/output/detailed_region_analysis.txt
src/fmri/PCACorrelator/output/full_correlation_results.csv
src/fmri/PCACorrelator/output/heatmap_a.png
src/fmri/PCACorrelator/output/heatmap_v.png
src/fmri/PCACorrelator/output/heatmap_va.png
src/fmri/PCACorrelator/output/heatmap_x.png
src/fmri/PCACorrelator/output/spatial_correlation_summary.txt
src/fmri/PCACorrelator/output/temporal_PC_0.png
src/fmri/PCACorrelator/output/temporal_PC_1.png
src/fmri/PCACorrelator/output/temporal_PC_2.png
src/fmri/PCACorrelator/output/temporal_PC_3.png
src/fmri/PCACorrelator/output/temporal_PC_4.png
src/fmri/PCACorrelator/output/temporal_PC_5.png
src/fmri/PCACorrelator/output/temporal_PC_6.png
src/fmri/alternative_code/__init__.py
src/fmri/alternative_code/b-spline.py
src/fmri/alternative_code/evaluate_lambda.py
src/fmri/alternative_code/main.py
src/fmri/alternative_code/main_old.py
src/fmri/alternative_code/pca.py
src/fmri/analysis_exp_visual_audio/__init__.py
src/fmri/analysis_exp_visual_audio/classify_pcs.py
src/fmri/analysis_exp_visual_audio/heatmap_design.py
src/fmri/analysis_exp_visual_audio/settings.py
src/fmri/analysis_exp_visual_audio/old-code/Amplitude_Heatmaps.png
src/fmri/analysis_exp_visual_audio/old-code/CONTRAST_Analysis_V_minus_A.png
src/fmri/analysis_exp_visual_audio/old-code/Final_Analysis_Amplitude_Scrollable.png
src/fmri/analysis_exp_visual_audio/old-code/GLM_vs_Simple_Correlation_Heatmaps.png
src/fmri/analysis_exp_visual_audio/old-code/classify_pcs_back.py
src/fmri/analysis_exp_visual_audio/old-code/classify_pcs_v0.py
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src/fmri/analysis_exp_visual_audio/old-code/classify_pcs_v2.py
src/fmri/analysis_exp_visual_audio/old-code/classify_pcs_v3.py
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src/fmri/analysis_exp_visual_audio/old-code/classify_pcs_work.py
src/fmri/analysis_exp_visual_audio/old-code/diag.py
src/fmri/analysis_exp_visual_audio/output/CONTRAST_Analysis.png
src/fmri/analysis_exp_visual_audio/output/detailed_region_analysis.txt
src/fmri/analysis_exp_visual_audio/output/full_correlation_results.csv
src/fmri/analysis_exp_visual_audio/output/spatial_correlation_summary.txt
src/fmri/analysis_exp_visual_audio/output/temporal_PC_0.png
src/fmri/analysis_exp_visual_audio/output/temporal_PC_1.png
src/fmri/analysis_exp_visual_audio/output/temporal_PC_2.png
src/fmri/analysis_exp_visual_audio/output/temporal_PC_3.png
src/fmri/analysis_exp_visual_audio/output/temporal_PC_4.png
src/fmri/analysis_exp_visual_audio/output/temporal_PC_5.png
src/fmri/analysis_exp_visual_audio/output/temporal_PC_6.png
src/fmri/cli/__init__.py
src/fmri/cli/compare_pcs.py
src/fmri/cli/convert_npz_format.py
src/fmri/cli/downloaod_nii_file.py
src/fmri/cli/find_best_lags.py
src/fmri/cli/fmri_main.py
src/fmri/cli/nifti_viewer.py
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src/fmri/cli/preprocess_multiple_files_temp.sh
src/fmri/cli/preprocess_nii_file.py
src/fmri/cli/run_compare_pcs_combinations.sh
src/fmri/cli/run_parameter_combinations.sh
src/fmri/cli/run_parameter_combinations_example.sh
src/fmri/cli/run_parameter_combinations_powershell.ps1
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tests/__init__.py
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tests/test_fmri.py
tests/test_functional_pca.py
tests/test_gcv.py
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