joblib<2.0,>=1.0
networkx<4.0,>=3.0
numpy<3.0,>1.24
pandas<3,>=2
pyfastx<3,>=2
pyrodigal<4,>=3
pyroaring<2.0.0,>=1.0.0
typer<1.0.0,>=0.9.0
rich<14.0.0,>=12.0.0

[dev]
pytest>=7.0.0
pytest-cov
ruff>=0.1.0

[doc]
sphinx==6.2.1
sphinx_rtd_theme==1.2.2
readthedocs-sphinx-search==0.3.1
sphinx-autobuild==2021.3.14
myst-parser==1.0.0
docutils==0.18.1
nbsphinx==0.9.5
nbsphinx_link==1.3.0
sphinx-book-theme==1.0.1
sphinxcontrib.mermaid
sphinx_togglebutton==0.3.2
