CHANGES.md
LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
cooler/__init__.py
cooler/_binning.py
cooler/_writer.py
cooler/api.py
cooler/core.py
cooler/ice.py
cooler/io.py
cooler/tools.py
cooler/util.py
cooler.egg-info/PKG-INFO
cooler.egg-info/SOURCES.txt
cooler.egg-info/dependency_links.txt
cooler.egg-info/entry_points.txt
cooler.egg-info/not-zip-safe
cooler.egg-info/pbr.json
cooler.egg-info/requires.txt
cooler.egg-info/top_level.txt
cooler/cli/__init__.py
cooler/cli/aggregate.py
cooler/cli/balance.py
cooler/cli/cload.py
cooler/cli/copy.py
cooler/cli/csort.py
cooler/cli/digest.py
cooler/cli/dump.py
cooler/cli/expected.py
cooler/cli/info.py
cooler/cli/list_.py
cooler/cli/load.py
cooler/cli/makebins.py
cooler/cli/merge.py
cooler/cli/migrate.py
cooler/cli/show.py
cooler/cli/test.py
cooler/cli/util.py
cooler/contrib/__init__.py
cooler/contrib/dask.py
cooler/contrib/higlass.py
docs/Makefile
docs/api.rst
docs/cli.rst
docs/conf.py
docs/container.rst
docs/datamodel.rst
docs/glossary.rst
docs/index.rst
docs/make_cli_rst.py
docs/quickstart.rst
docs/requirements.txt
docs/schema.rst
docs/schema_current.rst
docs/schema_v1.rst
tests/test_api.py
tests/test_cli_aggregate.py
tests/test_cli_csort_cload.py
tests/test_cli_load.py
tests/test_cli_merge.py
tests/test_contrib.py
tests/test_core.py
tests/test_ice.py
tests/test_io.py
tests/test_roundtrip.py
tests/test_util.py
tests/data/GM12878-MboI-contacts.subsample.shuffled.txt.gz
tests/data/GM12878-MboI-contacts.subsample.sorted.frag
tests/data/GM12878-MboI-contacts.subsample.sorted.h5
tests/data/GM12878-MboI-contacts.subsample.sorted.txt.gz
tests/data/GM12878-MboI-contacts.subsample.sorted.txt.gz.tbi
tests/data/GM12878-MboI-matrix.2000kb.bg2
tests/data/GM12878-MboI-matrix.2000kb.bg2.blksrt.gz
tests/data/GM12878-MboI-matrix.2000kb.bg2.blksrt.gz.px2
tests/data/GM12878-MboI-matrix.2000kb.cool
tests/data/GM12878-MboI-matrix.2000kb.txt
tests/data/GM12878-MboI-matrix.2000kb.txt.gz
tests/data/GSM1551552_HIC003_merged_nodups.txt.subset.gz
tests/data/IMR90-MboI-matrix.2000kb.npy
tests/data/UBR4_chromsize_bins.1nt.bed
tests/data/b37-chromsizes.select.txt
tests/data/b37-chromsizes.txt
tests/data/dec2_20_pluslig_1pGene_grch38_UBR4_D_1nt.pairwise.sorted.cool
tests/data/dec2_20_pluslig_1pGene_grch38_UBR4_D_1nt.pairwise.sorted.multires.cool
tests/data/dec2_20_pluslig_1pGene_grch38_UBR4_D_1nt.pairwise.sorted.txt.gz
tests/data/dec2_20_pluslig_1pGene_grch38_UBR4_D_1nt.pairwise.sorted.txt.gz.tbi
tests/data/dixon2012-h1hesc-hindiii-allreps-filtered.1000kb.multires.cool
tests/data/hg19-bins.2000kb.bed.gz
tests/data/hg19-bins.MboI.bed.gz
tests/data/hg19-chromsizes.select.txt
tests/data/hg19-chromsizes.txt