.. cooler documentation master file, created by
   sphinx-quickstart on Sun Jan 17 11:53:23 2016.
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Cooler
======

Cooler is a Python support library for .cool files: an efficient storage format for high resolution genomic interaction matrices.

The cooler package aims to provide the following functionality:

* Build contact matrices at any genomic resolution.
* Query contact matrices.
* Export and visualize the data.
* Perform scalable out-of-core operations on the data.
* Provide a clean and well-documented Python API to interact with the data.

Follow cooler development on `GitHub <https://github.com/mirnylab/cooler>`_.


Contents:

.. toctree::
   :maxdepth: 2

   quickstart
   datamodel
   schema
   container
   api
   cli


* :ref:`genindex`
* :ref:`Glossary`