>BAWL01000005.1/109462-109379 Bacillus sp. TS-2 DNA, contig: BspTS2nb05.
UAUAAAAUUGGAUGCGUUGAAUGGUUAUCUUUAUGUGGGCACUUG-GAUAAUCAGGAGCA
AGUAGUGCAACCGGCCAAGUUUGUA
>CP006905.1/713731-713648 Clostridium baratii str. Sullivan, complete genome.
AAAUUUGAUAGAAGCUAUGAAACAUAUUCUGUAUAUGGGCACUUG-GAAUAUGUGGAGCU
AGUAGUGCAACCGGCUAAUUAUUUU
>ALPT02000025.1/18332-18249 Bacillus alcalophilus ATCC 27647 = CGMCC 1.3604 strain AV1934 contig00025, whole genome shotgun sequence.
UAUAAAAUUGGAUGCGUUGAUUGAUUAUCUGUAUGUGGGCACUUG-GAUAGUCAGGAGCA
AGUAGUGCAACCGGCCAAGUUUGUA
>ALXI01000117.1/12061-12144 Clostridium sp. Maddingley MBC34-26 contig_216_3, whole genome shotgun sequence.
AUUAAAAUUGGAAACUGUGAAAAAUUCUCUUUAUUUGGGCACCUG-GGGAAUUUGGAGUU
AGUGGUGCAACCGGCCAAUAAUGAG
>URS0000D6CEA9_12908/1-84 unclassified sequences c-di-GMP-II-AAU riboswitch
AUAAAAGUUGGAAACUGUGAAAAAUUCUCUUUAUUUGGGCACCUA-GAGAAUUUGGAGUU
AGUGGUGCAACCUGCCAACAAUUAA
>ALXI01000005.1/22614-22531 Clostridium sp. Maddingley MBC34-26 contig_10_1, whole genome shotgun sequence.
AUUUGAAUUGGAAGCUGUGAAAAAUUCUCUUUAUUUGGGCACUUU-GAGAAUUUAGAGCU
AAUUGUGCAACCGACCAGUUAAAAC
>LBBT01000147.1/51056-51139 Clostridium sp. JC272 contig155, whole genome shotgun sequence.
UUUAAAUAUAGAGGCUAUGAAAUAUGUUUUGUAUAUGGGCACUUG-AAACAUAUGGAGCU
AAUAGUGCAACCGGCUAUUUAAAGA
>MGOT01000126.1/367-451 Clostridiales bacterium GWC2_40_7 gwc2_scaffold_22042, whole genome shotgun sequence.
AGAAUAUACUGAGGCGUUGAAAUAUAGCUAGUAUUUGGGCACUUUAUGCUAUAUGGAGCC
AGUAGUGCAACCGGCAGUAUUUUUA
>CP017269.1/2324501-2324418 Geosporobacter ferrireducens strain IRF9, complete genome.
UUGAAGAAAGGGAGCGUUGAAGCGUGUUUUUCAUCUGGGCACUUG-AAAUACGUGGAGCG
AGUAGUGCAACCGACCUUUCUUUAA
>KB850956.1/112025-112108 Clostridium colicanis 209318 genomic scaffold acBRg-supercont1.1, whole genome shotgun sequence.
UAUAAAAUCUGAAGCUUUGAAAUACAUUUUUUAUUUGGGCACUUU-AAAUGUAUAGAGCU
AGUAGUGCAACCGACUGAUUUAUUC
>MZGT01000082.1/6332-6249 Clostridium chromiireducens strain DSM 23318 CLCHR_contig000082, whole genome shotgun sequence.
AUCAAGAUUGGAAGCUAUGAAAAAUUCUUUAUAUUUGGGCACUUU-AAGGAUUUAGAGCU
AGUUGUGCAACCGACCAAUUUAAAC
>URS0000ABBA42_290402/1-84 Clostridium beijerinckii NCIMB 8052 Cyclic di-GMP-II riboswitch
AGAACAAUUGGAAGCGAUGAAAAAUUCUCUAUAUCUGGGCACUUU-GAGAAUUUGGAGCU
AGUUGUGCAACCGACCAAUUAAAAC
>CP001056.1/3474048-3473965 Clostridium botulinum B str. Eklund 17B, complete genome.
UAUAAAGUUGGAGAUUGUGAAUAGUUCUCUUUAUUUGGGCACCUU-GAGAACUAGGAGUC
AGUGGUGCACCCGGCCAACAAAUUA
>MLQR01000050.1/242753-242670 Anaerobacillus alkalilacustris strain DSM 18345 Ga0137925_152, whole genome shotgun sequence.
AUAAUAUUUUGAAGCUAAGAAGAAUCAUCUAUAUUUGGGCACUUG-GAUGAUUUCGAGCU
AGUAGUGCAACCGGCCAAAUUUUGU
>ACVI01000032.1/43884-43967 Clostridium carboxidivorans P7 ctg00129, whole genome shotgun sequence.
UUAAAAAAUGGAAACUGUGAAAAAUUCUCUUUACUUGGGCACUUG-GAGAAUUUAGAGUU
AGUAGUGCAACCGGCCAAUAAUUAG
>URS0000D6CADC_12908/1-84 unclassified sequences c-di-GMP-II-AAU riboswitch
UUAAAUAUUGGAUACAUGGAAAAAUUCUCUUUAUAUGGGCACCUU-GAGAAUUUGGAGUU
AGUGGUGCAACCUGCCAAUAAUUAG
>URS0000AB4190_290402/1-84 Clostridium beijerinckii NCIMB 8052 Cyclic di-GMP-II riboswitch
AUUACAAUUGGAAGCUAUGAAGAAUUCUUUCUAAGUGGGCACUUU-AAGAGUUUGGAGCU
AGUUGUGCAACCGACCAAUUAAGAU
>ADMN01000011.1/58945-58863 Turicibacter sanguinis PC909 contig00029, whole genome shotgun sequence.
-GAAUUAAAAGAAACGAUGAAGUAUAUUCUGUAUUUGGGCACCUG-GAAUAUAUGGAGUU
AGUGGUGCAACCGGCUUUAUAAAUU
>LBBT01000127.1/15263-15346 Clostridium sp. JC272 contig134, whole genome shotgun sequence.
AAGAAAGAUAGAGGCGAAGAAAUAUAUCCUGUAUGUGGGCACCUG-GGGUAUAUGGAGUC
AGUGGUGCAACCGGCUAUAUUUAUU
>CYZR01000003.1/62458-62541 Clostridium ventriculi strain 2789STDY5834858 genome assembly, contig: SCcontig000003
AUAAGAUGUAGAUUCUAUGAAAUAUAUUCUGUAUUUGGGCACUUG-GAAUAUAUGGAGAA
AAUAGUGCAACCGGCUAUAUUUAUA
>KE993496.1/6791-6873 Clostridiales bacterium oral taxon 876 str. F0540 genomic scaffold Scaffold50, whole genome shotgun sequence.
UAAUUUA-CGGAAGCUAAGAUAUGAAUUCCUUACCUGGGCACUUG-GAAUUCAUGGAGCU
AGUAGUGCAACCGGCCGAUUAAUUA
>URS0000AB5C02_272562/1-83 Clostridium acetobutylicum ATCC 824 Cyclic di-GMP-II riboswitch
UAUUUGUUUGGAAACAAUGAUGAAUUUCUUUAAAUUGGGCACUUG-AGAAAUUUUGAGUU
AGUAGUGCAACCGACCAA-CGAUUA
>KB850956.1/111850-111934 Clostridium colicanis 209318 genomic scaffold acBRg-supercont1.1, whole genome shotgun sequence.
UAUAAAAUCUGAAGCUUUGAAAUACAUUUUUUAUUUGGGCACUUU-AAAUGUAUAGAGCU
AGUAGUGCAACCGACUGAUUUAUUC
>LZYV01000070.1/27076-26993 Clostridium roseum strain DSM 7320 CROST_contig000070, whole genome shotgun sequence.
UUAAGCGUUGGAAACUAUGAAGAAUUCUCUUUACUUGGGCACCUG-GGAAAUUCGGAGUU
AGUGGUGCAACCGGCCAACAAUAAU
>LBBT01000127.1/15388-15471 Clostridium sp. JC272 contig134, whole genome shotgun sequence.
AAGAAAAAUAGAGGCGAAGAAGUAUAACCUGUAUGUGGGCACCUG-GGAUAUACGGAGUC
AGUGGUGCAACCGGCUAUAUUUAUU
>LGVB01000015.1/393233-393150 Clostridium sp. DMHC 10 contig_15, whole genome shotgun sequence.
AGAAAAGUUGGAAACUAUGAUAAAUCUCUUCUAUGUGGGCACUUU-AGAGAUUUGGAGUU
ACUUGUGCAACCGGCCAACAAUUAA
>LZZM01000154.1/56575-56656 Clostridium puniceum strain DSM 2619 CLPUN_contig000154, whole genome shotgun sequence.
AUAAUCG--GGAAGCUAUGAAGAAUUUUCUUUAUUUGGGCACUUA-GAGAAUUUGGAGCU
AGUAGUGCAACCGGCCAACAAUUAA
>KE993496.1/7583-7666 Clostridiales bacterium oral taxon 876 str. F0540 genomic scaffold Scaffold50, whole genome shotgun sequence.
AAUUUUUACGGAAGCUGAGAUAUAAAUUCUUUACUUGGGCACUUG-GAAUUUAUGGAGCU
AGUAGUGCAACCGACCGAUUGAUUU
>CP006721.1/4023915-4023832 Clostridium saccharobutylicum DSM 13864, complete genome.
AUAAAAAGCGGAAACUGUGAAAAAUUCUCUUUAUCUGGGCACUUU-GAGAAUUUGGAGUU
AGUAGUGCAACCGGCCAAUAAUUAG
>ALXI01000164.1/14568-14487 Clostridium sp. Maddingley MBC34-26 contig_331_3, whole genome shotgun sequence.
UUUUAAUUAGGAAACGAUGAUUCAUAUAUUUAAUUUGGGCACUUU-AUAUAUGAUGAGUU
AGUAGUGCAACCGACCUU--UAAGU
>CM001240.1/4559909-4559827 Clostridium sp. DL-VIII chromosome, whole genome shotgun sequence.
AUAAAACUUGGAAGCUGUGAAGAAUUCUUUU-AUGUGGGCACUUU-AGGAAUUUGGAGCU
AGUUGUGCAACCGGCCAAUUUAAAC
>MRTK01000011.1/100884-100967 Paenibacillus sp. FSL H8-0548 NODE_11_length_152017_cov_2.22271_ID_11288, whole genome shotgun sequence.
AACUACCAGGGAAGCGAUGAAAUAUAAUCUGCAUUUGGACACUUG-GAUUAUAUGGAGCU
AGUAGUGUAACCGGCCCUCUUAGAA
>ALXI01000002.1/30070-30153 Clostridium sp. Maddingley MBC34-26 contig_2, whole genome shotgun sequence.
AUAAAGAUUGGAAGCUAUGAAAAAUUCUUUAAAUGUGGGCACUUU-GAGAAUUUAGAGCU
AGUUGUGCAACCGACCAAUUUAGAC
>CBML010000006.1/129002-129085 Clostridium chauvoei JF4335, WGS project CBML01000000 data, contig: 00001
UAUUAAUUAAGAAUCUAAGAAUUACACUUUGUAUAUGGGCACUUG-AAGUGUAAGGAGAU
AAUAGUGCAACCGGCUUAUUUUAAG
>CP004121.1/2102093-2102176 Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome.
AGAAAAUGUGGAAACAGUGAAAAAUUCUCUUUAUUUGGGCACUUU-GAGAAUUUAGAGUU
AAUAGUGCAACCGACCACUAAUUAG
>LWAE01000003.1/297835-297752 Clostridium magnum DSM 2767 CLMAG_contig000003, whole genome shotgun sequence.
AGUAAAGUUGGAGGCAAUGAAAAAUUCCUUUUAUGUGGGCACUUU-AGGAAUUUGGAGCU
AGUGGUGCAACCUGCCAACAAUUAA
>URS0000AB7B1E_272562/1-84 Clostridium acetobutylicum ATCC 824 Cyclic di-GMP-II riboswitch
UUAAGCGUUGGAGACUGUGAAGAAUUUCUUGUAUUUGGGCACCUU-AGAAAUUUGGAGUU
AGUGGUGCAACCUGCCAACAAUAAU
>URS0000AB7B1E_863638/1-84 Clostridium acetobutylicum EA 2018 c-di-GMP-II-AAU riboswitch
UUAAGCGUUGGAGACUGUGAAGAAUUUCUUGUAUUUGGGCACCUU-AGAAAUUUGGAGUU
AGUGGUGCAACCUGCCAACAAUAAU
>URS0000D6AC7F_1151292/1-86 Clostridioides difficile CD160 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAAUCUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>URS0000AB7AC6_195102/1-84 Clostridium perfringens str. 13 Cyclic di-GMP-II riboswitch
AAAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUGCUGAGUU
AGUGAUGCAACCGACUAUAUUUAUA
>URS0000AB7AC6_195103/1-84 Clostridium perfringens ATCC 13124 Cyclic di-GMP-II riboswitch
AAAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUGCUGAGUU
AGUGAUGCAACCGACUAUAUUUAUA
>URS0000AB7AC6_451754/1-84 Clostridium perfringens B str. ATCC 3626 Cyclic di-GMP-II riboswitch
AAAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUGCUGAGUU
AGUGAUGCAACCGACUAUAUUUAUA
>URS0000AB7AC6_451756/1-84 Clostridium perfringens CPE str. F4969 Cyclic di-GMP-II riboswitch
AAAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUGCUGAGUU
AGUGAUGCAACCGACUAUAUUUAUA
>MZGT01000009.1/97261-97344 Clostridium chromiireducens strain DSM 23318 CLCHR_contig000009, whole genome shotgun sequence.
UUUUUUUAAGGAAACAGUGAACCGUAUAUUUUAUCUGGGCACUUU-AUAUAUGGUGAGUU
AAUAGUGCAACCGGCCUUGAUAGUU
>LBBT01000127.1/15138-15221 Clostridium sp. JC272 contig134, whole genome shotgun sequence.
CAACAAAAUAGAAACGAAGAAGUAUAUUCUGUAUGUGGGCACCUG-GGAUAUACAGAGUU
AGUGGUGCAACCGGCUAUAUUUAUU
>CP002630.1/142650-142566 Marinithermus hydrothermalis DSM 14884, complete genome.
GGAGCGUUCGGAGGCGAUGAACCGUACUCCCAACCUGGGCACCAAGGGAUACGGGGAGCC
AGUGGUGCAACCGGCCGAACGCCGU
>CP006721.1/1277626-1277708 Clostridium saccharobutylicum DSM 13864, complete genome.
AGUUAUA-AGGAAACUGUGAUCCAUAUAUUGUAAUUGGGCGCUUU-AUAUAUGGUGAGUU
AGUAGUGCAACCGACCUUUAUAGUU
>URS0000ABAAA3_272563/1-86 Clostridioides difficile 630 Cyclic di-GMP-II riboswitch
UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAUGUGGGCACCUUGGAGCAUAUUGAGUU
AGUGGUGCAACCGGCUAUGAAAUUG
>URS00003AC1AB_212717/1-83 Clostridium tetani E88 Cyclic di-GMP-II riboswitch
AUUUUAAGAGGAAAUUUUGAACUAUAUACUU-AUUUGGGCACUUU-GUAUAUAGGGAGUU
AGUAGUGCAACCGACCUUGAUUAAU
>LFZW01000001.1/3780948-3780865 Bacillus sp. FJAT-27997 Scaffold1, whole genome shotgun sequence.
GAAUAGAUUGGAAACUGUGAUUGAUCAUUUUUAUUUGGGCACUUA-AAUGAUCAGGAGUG
AGUAGUGCAACCCGCCAAUUUAUAU
>ALXI01000102.1/30852-30934 Clostridium sp. Maddingley MBC34-26 contig_203_1, whole genome shotgun sequence.
CUAUUUAUAGGAAACUGUGAUUCAUAUAUUU-AUUUGGGCACUUU-GUAUAUGAUGAGUU
AGUAGUGCAACCGACCUUUAUUUAA
>MGOX01000032.1/42534-42451 Clostridiales bacterium GWF2_36_10 gwf2_scaffold_556, whole genome shotgun sequence.
AAUAAAAAGGGAUACUUUGAUGAGUACUGUUUAUGUGGGCACUUU-CAGUACUCGGAGUA
UAUAGUGCAACCGACCCUGCUUAAU
>FQVH01000013.1/42321-42238 Caldanaerobius fijiensis DSM 17918 genome assembly, contig: EJ21DRAFT_scaffold00013.13
AUAAGUGUAGGGGAUGAUGAAGUAUGGCUUGUAUAUGGGCACUUG-AGCCAUAUGGAGUC
AAUAGUGCAACCGACCUACGCAUUA
>URS0000AB9CD4_525258/1-86 Clostridioides difficile NAP07 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACUUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>URS0000AB9CD4_699037/1-86 Clostridioides difficile M68 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACUUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>URS0000AB9CD4_997828/1-86 Clostridioides difficile 050-P50-2011 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACUUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>ACVI01000001.1/117963-117880 Clostridium carboxidivorans P7 ctg00174, whole genome shotgun sequence.
UAUGUCUUGGGAAAUUAUGAGCUAUAUACUUAAUUUGGGCACUUU-GUAUAUAGGGAGUU
AUUAGUGCAACCGGCCGAAUAUUUA
>CP004121.1/635127-635209 Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome.
UGGAAAGUUGGAAACGAUGAUGAGUUCUUUU-AUUUGGGCACCUU-AAGAAUUCGGAGUU
AGUGGUGCAACCUGCCAACAAUUAA
>URS0000C1413B_931276/1-83 Clostridium saccharoperbutylacetonicum ATCC 27021 Cyclic di-GMP-II riboswitch
UGGAAAGUUGGAAACGAUGAUGAGUUCUUUU-AUUUGGGCACCUU-AAGAAUUCGGAGUU
AGUGGUGCAACCUGCCAACAAUUAA
>CM001240.1/5228710-5228629 Clostridium sp. DL-VIII chromosome, whole genome shotgun sequence.
AAUCAAUAUGGAAACAAUGAUUCAUAUAUUUAUUUUGGGCACUUU-AUAUAUGAGGAGUU
AGUAGUGCAACCGGCCUU--UGUUU
>URS0000AB5761_12908/1-84 unclassified sequences Cyclic di-GMP-II riboswitch
CAUGUAGUUGGAAACGAAGAAUAGUUCUCUCAAUCUGGGCACCUU-GGGAACUAGGAGUU
AGUGGUGCAACCCGCCAGCAAAUUA
>URS0000D6663C_289380/1-83 Clostridium perfringens SM101 Cyclic di-GMP-II riboswitch
AUAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUGCUGAGUU
AGUGAUGCAACCGACUAU-AUUUAU
>LOEW01000060.1/63837-63754 Desulfosporosinus sp. BRH_c37 BRHa_1001559, whole genome shotgun sequence.
UGAAAACAAGGAAAUUUUGAAGCAUGUAUUUUAUUUGGGCGCUUG-AUACAUGUGGAAUA
AGUAGCGCAACCGGCCUAGUUUAUA
>MZGT01000062.1/10753-10834 Clostridium chromiireducens strain DSM 23318 CLCHR_contig000062, whole genome shotgun sequence.
AUAUGAUUUGGGAGCUAUGAAGAAUUCUUUU-AUUUGGGCACUUU-AAGAAUUUGGAGCU
AGUUGUGCAACCGACCAAUCUAAG-
>URS0000AB153C_386415/1-85 Clostridium novyi NT Cyclic di-GMP-II riboswitch
UUUUUAAAAGGAGACUUUGAACUAUAUACUUUAUUUGGGCACUUU-GUAUAUAGGGAGUC
AUUAGUGCAACCGACCUUAUUUUAU
>URS0000AB4989_367459/1-86 Clostridioides difficile QCD-32g58 Cyclic di-GMP-II riboswitch
UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAUGUGGGCACCUUAGAGCAUAUUGAGUU
AGUGGUGCAACCGGCUAUGAAAUUG
>CP006905.1/713604-713521 Clostridium baratii str. Sullivan, complete genome.
UUAAAUAAUAGAAGCAUUGAAAUAUAUCCUGUAUAUGGGCACUUG-GGGUAUGUGGAGCU
AGUAGUGCAACCGGCUAAUAUACUU
>LN681234.1/2259735-2259652 [Clostridium] sordellii strain JGS6382 genome assembly, chromosome: 1
UAAUAAUUUAGAGACGAAGAAGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUAUGGAGUU
AGUGAUGCAACCGGCUAUAUUUACA
>LWAE01000002.1/630239-630321 Clostridium magnum DSM 2767 CLMAG_contig000002, whole genome shotgun sequence.
UAGGUAUUUGGAAACUAUGAUAAAUUCUUUGUAUUUGGGCACUUU-AGGAAUUUGGAGUU
AGCAGUGCAACCGACCAA-UAUAAA
>URS0000ABA1F6_12908/1-103 unclassified sequences Cyclic di-GMP-II riboswitch
CACCACUGUGGACGCUUUGAUCCGGUGUCUUGAUUUGGUCGCUUAGGGCGCCGGGGAGCG
AGUAGCGAAACCGGCCAC--UGGUA
>AP012050.1/1060455-1060538 Amphibacillus xylanus NBRC 15112 DNA, complete genome.
AAAUAUUUCAGAAACGAUGAGAAUUCAUCUUAAUUUGGGCACUUU-GAUGGAUUUGAGUU
AGUAGUGCAACCGGCUGACAUCAUA
>LZFO01000020.1/2391-2307 Clostridium acetireducens DSM 10703 CLAC_contig000020, whole genome shotgun sequence.
AUUUAAAUUGGAAACUGUGAAGAAUUCUCUGUUUUUGGGCACCUA-GAGAAUUUAGAGUU
AGUGGUGCAACCGACCAAUAAUUAA
>CM001240.1/4349737-4349654 Clostridium sp. DL-VIII chromosome, whole genome shotgun sequence.
AAAAAAUGUGGAAACGGUGAAAAAUUCUCUCUAUAUGGGCACUUU-GAGAAUUUGGAGUU
AAUAGUGCAACCGACCAAUUUAAGC
>MKTL01000016.1/52557-52474 Clostridiales bacterium 38-18 SCNpilot_bf_inoc_scaffold_50, whole genome shotgun sequence.
AGUAAAGAGGGACAUGAUGAAGCAUCUCUUGAAACUGGGCACUUU-AGAGAUGCGGAGUG
AAUAGUGCAACCGACCCUUUCUUUA
>ALXI01000001.1/9153-9071 Clostridium sp. Maddingley MBC34-26 contig_1, whole genome shotgun sequence.
AUAGCAAUUGGAAACUAUGAAGAAUUCUUUU-ACGUGGGCACCUU-AAGAAUUUGGAGUU
AGUGGUGCAACCUGCCAGUUGAAAA
>URS0000C33F58_1196322/1-83 Clostridium sp. Maddingley MBC34-26 Cyclic di-GMP-II riboswitch
AUAGCAAUUGGAAACUAUGAAGAAUUCUUUU-ACGUGGGCACCUU-AAGAAUUUGGAGUU
AGUGGUGCAACCUGCCAGUUGAAAA
>CCXR01000001.1/4147829-4147745 Bacillus sp. B-jedd genome assembly, contig: CONTIG000001
ACUAUUAGGGGAAGCGAUGAAGGAUAUCCUUUAUCUGGACACUUUGGGAUAUCUGGAGCC
AGUAGUGUAACCGGCCCCCCAAAAA
>CP003382.1/3109841-3109924 Deinococcus peraridilitoris DSM 19664, complete genome.
UCGGUGAAGAGAUGCAUUGAACCUCGCCCUGUAUUCGGGCACCUU-GGGCGGGGGGAGCA
AGUGGUGCGACCGGCUUUUCGUCCA
>URS0000C844F4_937777/1-84 Deinococcus peraridilitoris DSM 19664 Cyclic di-GMP-II riboswitch
UCGGUGAAGAGAUGCAUUGAACCUCGCCCUGUAUUCGGGCACCUU-GGGCGGGGGGAGCA
AGUGGUGCGACCGGCUUUUCGUCCA
>LFZU01000001.1/4108889-4108972 Bacillus sp. FJAT-27231 Scaffold1, whole genome shotgun sequence.
UCCUUUAAGGGAUGCUAUGAAGCAUAGUCUUUAUUUGGACACUUG-GACUAUGUGGAGCA
AGUAGUGUAACCGACCCUCUUAUUU
>URS0000ABB2E4_1151314/1-86 Clostridioides difficile 6042 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>URS0000ABB2E4_1151346/1-86 Clostridioides difficile DA00211 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>URS0000ABB2E4_1151412/1-86 Clostridioides difficile P30 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>URS0000ABB2E4_1215065/1-86 Clostridioides difficile E16 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>URS0000ABB2E4_1215072/1-86 Clostridioides difficile E24 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>URS0000ABB2E4_1215077/1-86 Clostridioides difficile E9 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>URS0000ABB2E4_272563/1-86 Clostridioides difficile 630 Cyclic di-GMP-II riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>URS0000ABB2E4_479831/1-86 Clostridioides difficile QCD-63q42 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>URS0000ABB2E4_499175/1-86 Clostridioides difficile ATCC 43255 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>CP009687.1/964659-964740 Clostridium aceticum strain DSM 1496, complete genome.
UAAUCAUUAGGAAACAAAGAAGUAGGUUCUAUAUUUGGGCACCUA-GAACCUAUGGAGUG
AGUGGUGCAACCGACCUA--GGCUA
>LZYV01000083.1/7575-7658 Clostridium roseum strain DSM 7320 CROST_contig000083, whole genome shotgun sequence.
UUAUGUUUUGGAAACAAUGAUAAAUUCCUCUAACCUGGACACUUG-AGGGAUUUGGAGUU
AGUAGUGUAACCGGCCAACAAUUAA
>CM001240.1/1837525-1837609 Clostridium sp. DL-VIII chromosome, whole genome shotgun sequence.
UUUUAUUAAGGAAACUAUGAUCCAUAUAUUUUUUUUGGGCACUUU-AUAUAUGGUGAGUU
AGCAGUGCAACCGACCUUUAUGAUU
>LELK01000004.1/682777-682860 Anaerobacillus macyae strain DSM 16346 scaffold2, whole genome shotgun sequence.
UUAGAAGAGAGAGGCAAUGAAAUCGAGUCUUUAUAUGGGCACUUG-GAUUCGAUGGAGCC
AGUAGUGCAACCGACUAUCUUUCUG
>LFJO01000010.1/162633-162716 Bacillus pseudalcaliphilus strain DSM 8725 super19, whole genome shotgun sequence.
UAUAAAAUUGGACGUGAAGACGGAUUAUCUGUAUGUGGGCACUUG-GGUAAUCAAGAGCG
AGUAGUGCAACCGGCCAAGUUUGUA
>MKTL01000016.1/135779-135863 Clostridiales bacterium 38-18 SCNpilot_bf_inoc_scaffold_50, whole genome shotgun sequence.
AGUUGGAAAGGGAGCAAUGAAGUAUUUCUUGUAUCUGGGCACUUA-AGAAAUACGGAGCG
AGUAGUGCAACCGACCUUUCUUUAA
>URS0000D689A1_290402/1-83 Clostridium beijerinckii NCIMB 8052 Cyclic di-GMP-II riboswitch
-UGUCAUAAGGAAACUUUGAUCCAUAUAUUUUAAUUGGGCACUUU-AUAUAUGGUGAGUU
AGUAGUGCAACCGACCUUUAUAUUU
>FWWU01000004.1/218996-218912 Deinococcus hopiensis KR-140 genome assembly, contig: Deiho_Contig193.7
UCGGCUGAUAGAGGCGAUGAAGCGCGUCCUGUAUACGGGCACCUG-GGACGCGCGGAGCC
AGUGGUGCGACCGGCUAUCUGUCUG
>CP017603.1/1425664-1425745 Clostridium formicaceticum strain ATCC 27076, complete genome.
GAUAGCGUUGGAGGCAAUGAAAAAUUCUCUUCAUGUGGGCACCUU-GAGAAUUUUGAGCC
AGUGGUGCACCCGACCAGCAAUU--
>LIZO01000059.1/885-802 Dehalococcoidia bacterium DG_18 WOR1_52_54_22714, whole genome shotgun sequence.
AAUACGAAGUGUAGCGAUGAAUUGUUGCCUGUAUUUGGGCACUUG-GGCAACAAGGAGCU
AAUAGUGAAACCGACAUUUCGGGCA
>MBTG01000012.1/174244-174161 Paenibacillus ferrarius strain CY1 CY1_scaffold2, whole genome shotgun sequence.
AUAAUAUUAGGGAGCUUUGAAGCUAGGUCAUUAUAUGGGCACUUU-GACCUAGUGGAGCU
AAUAGUGCAACCGACCUUCUUUCAU
>AUPA01000192.1/28878-28960 Clostridium sp. BL8 Contig43, whole genome shotgun sequence.
UUUUUAGAAGGAAACUUUGAAACAUAUUCUU-AUUUGGGCACUUU-GGAUAUGUGGAGUU
UAUAGUGCAACCGGCCUUUAACAGG
>CP006763.1/3238717-3238800 Clostridium autoethanogenum DSM 10061, complete genome.
UUAAAAGUUGGAAACAAUGAAAAAUUCUCUAUAAUUGGGCACCUG-GAGAGUUUGGAGUU
AGUGGUGCAACCUGCCAAUAAUCGA
>URS0000C2D159_1341692/1-84 Clostridium autoethanogenum DSM 10061 Cyclic di-GMP-II riboswitch
UUAAAAGUUGGAAACAAUGAAAAAUUCUCUAUAAUUGGGCACCUG-GAGAGUUUGGAGUU
AGUGGUGCAACCUGCCAAUAAUCGA
>LZZM01000212.1/2296-2379 Clostridium puniceum strain DSM 2619 CLPUN_contig000212, whole genome shotgun sequence.
GGAAAAAGUGGGAACAAUGAAAAAUUCUCUUUAUUUGGGCACUUU-GAGAAUUUGGAGUU
AAUAGUGCAACCGACCAAUAAUUAG
>CP017603.1/1425867-1425950 Clostridium formicaceticum strain ATCC 27076, complete genome.
AAUAAAGUUGGAGGCAAUGAAAAAUUCUCUUCAUGUGGGCACCUU-GAGAAUUUUGAGCC
AGUGGUGCACCCGGCCGGCAAUUAA
>LJJC01000004.1/1645454-1645537 Bacillus shackletonii strain LMG 18435 super11, whole genome shotgun sequence.
AUAGAAAUUGGAAGCGAAGAAGAGUCAUUUGUAUAUGGGCACUUG-AAUGGCUCGGAGCU
UGUAGUGCAACCCGCCAAUUUUAUG
>LN681234.1/2259612-2259529 [Clostridium] sordellii strain JGS6382 genome assembly, chromosome: 1
UAAUGAUUUAGAGACGAAGAAGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUAUGGAGUU
AGUGAUGCAACCGGCUAUAUUUACA
>LN681234.1/3126643-3126560 [Clostridium] sordellii strain JGS6382 genome assembly, chromosome: 1
UAAUAUGAAAGAAACUUAGAAGUAUAUUCUGUAUAUGGGCACUUG-GGAUAUAUAGAGUU
AGUAGUGCAACCGGCUUCCAGUAUU
>MEYG01000060.1/113-195 Candidatus Atribacteria bacterium RBG_16_35_8 RBG_16_scaffold_20311, whole genome shotgun sequence.
UUUAUUAAUAGAGACGAUGAUUUACAUUCUGUAUUUGGGCACUUUGGAAUGUAAUGAGUC
AGUAGUGCAACCGGCU--UAAAAG-
>MZGT01000015.1/67737-67819 Clostridium chromiireducens strain DSM 23318 CLCHR_contig000015, whole genome shotgun sequence.
AUUACAAUUGGAAGCUGUGAAGAAUUCGUUU-AUUUGGGCAUAUU-AAGAAUUUGGAGCU
AGUUGUGCAACCGGCCAAUUAAAAC
>KB291612.1/4494-4412 Clostridium celatum DSM 1785 genomic scaffold Scfld19, whole genome shotgun sequence.
UAGUAAUAUAGAAUCUAUGAAGUAUAUAUUU-AUUUGGGCACUUU-AUAUAUACAGAGAU
UAUAGUGCAACCGGCUAUAUUUUAA
>CCXR01000001.1/4210842-4210923 Bacillus sp. B-jedd genome assembly, contig: CONTIG000001
UUAUCCUUGGGAAGCGUUGAAGUAUAGCCUCUACCUGGACACUUA-GGCUAUAUGGAGCU
AGUAGUGUAACCGGCCCU--CUUAA
>CM001240.1/4468243-4468160 Clostridium sp. DL-VIII chromosome, whole genome shotgun sequence.
AUGUAAAUUGGAAGCUGUGAAAAACUUUCUUAUUUUGGGCACAUU-GAGAGUUUAGAGCU
AGUUGUGCAACCGACCAAUUAAAUU
>CP002049.1/2322363-2322277 Truepera radiovictrix DSM 17093, complete genome.
CCGCCCCUCGGAGGCUUUGACACCCGUUCUGUAUAUGGGCGCUUGGGAGCGGGUCGAGCC
AGUAGCGCAACCGGCCGAGGGGAGC
>CP001727.1/379758-379674 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete genome.
CACGACGGUGGACGCGAAGAUCUCAGGUCGUCAUCUGGGCACAUAAGGCCUGAGGGAGCG
AGUUGUGCAACCGGCCACCCGCGUA
>CP001962.1/1792927-1792844 Thermus scotoductus SA-01, complete genome.
AGGUACCUCGGAGGCGAAGAAGCCUGCCCUGUAGUUGGGCGCCUG-GGGCAGGUGGAGCC
AGUGGCGCAACCGGCUGAGGGUUAG
>ALXI01000169.1/21957-21876 Clostridium sp. Maddingley MBC34-26 contig_331_9, whole genome shotgun sequence.
UUAAGUUUUGG-AACUGUGAAAAAUUCUCAUUAUUUGGGCACCUUUGAGGAUUUUGAGUU
AGUGGUGCAACCGACCAA--CUUAA
>CP014616.1/3885528-3885609 Sporosarcina psychrophila strain DSM 6497, complete genome.
AUAAUUAACGGAAACUGUGAAAUACAUCCUCUAUAUGGGCACCUU-GGAUGUAUGGAGUU
AUUGGUGCAACCGGCC--UGAUUAG
>MNYB01000011.1/34783-34866 Bacterium CG2_30_33_46 isolate CG2_30_33_46 cg2_3.0_scaffold_580_c, whole genome shotgun sequence.
UUUAUAUAGAGAAGCGAGGAAGUGUAAUCCGUAUCUGGGCACCUG-GAUUACAUGGAGCU
AUUGAUGCAACCGGCUCUAUUCGUA
>LCBL01000001.1/227700-227614 Candidate division CPR2 bacterium GW2011_GWC1_41_48 UU65_C0001, whole genome shotgun sequence.
GGAUAAAGCGGAAGCUUCGAUCCGUGACCUAUAUUUGGUCACCUUUGGUCACGGGGAGCU
AGUGGUGAAACCGGUCGCAUUUUUU
>LZZM01000194.1/7087-7005 Clostridium puniceum strain DSM 2619 CLPUN_contig000194, whole genome shotgun sequence.
UAAAAAGUUGGAAACGAGGAUGGAUUCUUUU-AUUUGGGCACCUU-AAGAAUUCGGAGUU
AGUGGUGCAACCUGCCAGCAAUUAA
>CP004121.1/4861362-4861279 Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome.
UUUGUUUAAGAAGACUAUGAAUCAUGUAUUGUAGAUGGGCACUUG-AUACAUGAGGAGUU
AGUAGUGCAACCGGCCUUAAAUUUU
>AHKH01000064.1/29523-29440 Paenibacillus dendritiformis C454 PDENDC1000064, whole genome shotgun sequence.
UAUAUAUUAGGAAACGAUGAAAUGCGCUUGUUGUCUGGGCACUUU-AGGCGCGUGGAGUU
AGUGGUGCAACCGGCCGAGUACAUU
>LMRV01000087.1/9638-9721 Paenibacillus sp. Soil522 contig_69, whole genome shotgun sequence.
UAGCAUAUGGGAGACGUGGAAGUGCGUUUAAUAUCUGGGCACCUU-AAACGCAUGGAGUC
AGUGGUGCAACCGUCCCGUAAUGAA
>LCKI01000011.1/1443-1360 Parcubacteria bacterium GW2011_GWC1_45_14 UW95_C0011, whole genome shotgun sequence.
UUUUUUGGUGAAGGCGAUGAAUCGCGAUUAGUAUUUGGGCGCUUU-AAUUGCGAGGAGCC
AGUAGCGCAACCGAUCACUCGUCAG
>MGOT01000089.1/7818-7899 Clostridiales bacterium GWC2_40_7 gwc2_scaffold_18795, whole genome shotgun sequence.
GAUAAUUAAUGAUGCGUUGAAAUGUAAUCUGUAUUUGGGCACUUG-GAUUACAUGGAGUG
AGUAGUGCAACCGGCUUUUUUUU--
>CP003382.1/1817976-1817893 Deinococcus peraridilitoris DSM 19664, complete genome.
CUGACGAGGAGACGCGAAGAACCCCGCCCUUUAAUCGGGCACCUG-GGACGGGGGGAGCG
AGUGGUGCGACCGGCUUUUCGUCUG
>URS0000C6787F_937777/1-84 Deinococcus peraridilitoris DSM 19664 Cyclic di-GMP-II riboswitch
CUGACGAGGAGACGCGAAGAACCCCGCCCUUUAAUCGGGCACCUG-GGACGGGGGGAGCG
AGUGGUGCGACCGGCUUUUCGUCUG
>ALXI01000070.1/158482-158565 Clostridium sp. Maddingley MBC34-26 contig_126_1, whole genome shotgun sequence.
AAAGAAAAUGGAAACUGUGAAAAAUUCUCUUUAUUUGGGCACCUU-GAGAAUUGGGAGUU
AGUGGUGCAACCGGCCGAUAAUUAG
>CP002394.1/3192859-3192776 Bacillus cellulosilyticus DSM 2522, complete genome.
AAUUUAAAAGGUAGCGAAGAAUAUAUGUCUUGAUUUGGGCACUUG-GACAUACAGGAGCU
AGUAGUGCAACCGACCUUGUUAUUU
>MGOD01000118.1/38240-38323 Chloroflexi bacterium RBG_16_70_13 RBG_16_scaffold_7531, whole genome shotgun sequence.
AGAACGCUCGGACGCGCUGAUGCCCCACCUG-AAAUGGGCACUUAGGGUGGGGUUGAGCG
AGUAGUGCAACCGACCGACCAUGUG
>MZGT01000027.1/48986-48903 Clostridium chromiireducens strain DSM 23318 CLCHR_contig000027, whole genome shotgun sequence.
AAAGAUAUUGGGGACUGUGAAAAAUUCUCUUUAUUUGGGCGCCUG-GAGAAUUUUGAGUU
UGUGGUGCAACCGACCAAUUUAAAU
>URS0000AB70B5_290402/1-83 Clostridium beijerinckii NCIMB 8052 Cyclic di-GMP-II riboswitch
UGUAUAUAAGGAAACUGUGAUUCGAAUAUUU-ACUUGGGCACUUU-AUAUUCGAUGAGUU
AAUAGUGCAACCGACCUUUUUAUUA
>MRTD01000002.1/94071-94152 Paenibacillus sp. FSL A5-0031 NODE_2_length_618310_cov_1.96654_ID_5121, whole genome shotgun sequence.
AAUAACUAGGGAAGCGAUGAAGUAUAAUCUACAAUUGGACACUUG-GAUUAUAUGGAGCU
AGUAGUGUAACCGGCCCUCUUGG--
>URS0000D65E7F_12908/2-84 unclassified sequences Cyclic di-GMP-II riboswitch
AUAAAUC-UGGAAGUAAUGAUAAAUUCUCUUUAUUUGGGCACUUU-GAGGAUUUUGAACU
AGUAGUGCAACCCGCCAACAAUUAA
>CP003184.1/399467-399384 Thermoanaerobacterium saccharolyticum JW/SL-YS485, complete genome.
AAAUAUAUAGGAUUCUGUGAAGCAUAACCUGUAUCUGGGCACCUG-GGUUAUGCGGAGAU
AGUGGUGCAACCGGCCGUAGUCUUU
>MBTG01000025.1/102138-102055 Paenibacillus ferrarius strain CY1 CY1_scaffold31, whole genome shotgun sequence.
UUAAAGUAUGGAAGCGAUGAUAUUGAAUCUAUAAUUGGGCACUUG-GAUUCAAUUGAGUU
AGUAGUGCAACCGGCCGUCCUAAUU
>CP002361.1/232155-232069 Oceanithermus profundus DSM 14977, complete genome.
UCAAAUCUUGGAGGCGAUGAACCGUGUCCCCAAUCUGGGCACCAAGGGGCACGGGGAGCC
AGUGGUGCAACCGGCCAAGAAGAUG
>LN681234.1/2259858-2259775 [Clostridium] sordellii strain JGS6382 genome assembly, chromosome: 1
UUAAUGAUUAGAAACGAAGAAGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUAUGGAGUU
AGUGAUGCAACCGGCUAUAUUUACA
>JXLP01000024.1/13742-13659 Bacillus badius strain MTCC 1458 Contig24, whole genome shotgun sequence.
GUCAUAUAGAGAAGCAAUGAAAAGCCAUUUAUAUCUGGGCACUUG-AAUGGCUUGGAGCG
ACUAGUGCAACCGACUCUUUUUUAA
>URS0000D68F2D_12908/1-85 unclassified sequences c-di-GMP-II-ACU riboswitch
AGUAAUGUUGGAAGCGAUGAAAAAUUUCUUAUAUGUGGGCACUUU-AGGAAUUUUGAGCU
AGUGGUGCACCCUGCCAACAAUUAA
>AFCE01000164.1/32300-32383 Caldalkalibacillus thermarum TA2.A1 ctg246, whole genome shotgun sequence.
UAGUGCAAAGGAUGUGAUGAAGUGCAACUCUUAGUUGGGCGCCUG-AGUUGCAUGGAGCG
AGUGGCGCAACCGGCCUUUACUUUU
>APWR01000102.1/58482-58399 Paeniclostridium sordellii ATCC 9714 gcs9714.contig.102, whole genome shotgun sequence.
AUGUAAAAUAGGGGCGAUGAAGUAUAUUCUUUAUAUGGGUACUUG-GAAUAUAUGGAGCA
AGUAGUGCAACCGACUAUUCAUAAG
>LGVB01000013.1/21214-21132 Clostridium sp. DMHC 10 contig_13, whole genome shotgun sequence.
AUAAAAA-UGGAAACUAUGAAAAAUUCUCUUUAUUUGGGUACCUU-GAGGAUUUGGAGUA
AGUGGUGCAACCGACCAGUAAUUAG
>LN681234.1/41037-41120 [Clostridium] sordellii strain JGS6382 genome assembly, chromosome: 1
AUGUAAAAUAGGGGCGAUGAAGUAUAUUCUUUAUAUGGGUACUUG-GAAUAUAUGGAGCA
AGUAGUGCAACCGACUAUUCAUAAG
>LWAE01000002.1/728123-728205 Clostridium magnum DSM 2767 CLMAG_contig000002, whole genome shotgun sequence.
UUAAACAUUGGAUACGUGGAAAAAUUCUCUU-ACAUGGGCACCUU-GAGAAUUUGGAGUU
AGUGGUGCAACCUGCCAAUAAUUAG
>CP017269.1/2324588-2324505 Geosporobacter ferrireducens strain IRF9, complete genome.
GCUAAGAACGGAAGUGAUGAAGCACAUUCGUCAUCUGGGCACUUA-GGAUGUGUGGAGCG
AGUGGUGCAACCGGCCUUUCUUGAU
>URS0000ABB965_272563/1-84 Clostridioides difficile 630 Cyclic di-GMP-II riboswitch
-AAUAUUUUAGAAACUGAGAAGUAUAUCUUAUUAUUGGGCAUCUGGAGAUAUAUGGAGUU
AGUGGUGCAACCGGCUAUGAAUAUA
>URS0000ABB965_367459/1-84 Clostridioides difficile QCD-32g58 Cyclic di-GMP-II riboswitch
-AAUAUUUUAGAAACUGAGAAGUAUAUCUUAUUAUUGGGCAUCUGGAGAUAUAUGGAGUU
AGUGGUGCAACCGGCUAUGAAUAUA
>APWR01000103.1/28209-28126 Paeniclostridium sordellii ATCC 9714 gcs9714.contig.103, whole genome shotgun sequence.
UAAUAUGAAAGAAACGUAGAAGUAUAUUCUGUACAUGGGCACUUG-GGAUAUAUAGAGUU
AGUAGUGCAACCGGCUUCCAGUAUU
>URS0000D6AD83_12908/1-84 unclassified sequences c-di-GMP-II-ACU riboswitch
AGCAAAGUUGGAAGCAAUGAAAAAUUCCUUUUAUUUGGGCACUUU-GGGAAUUUUGAGCU
AGUGGUGCACCCUGCCAACAAUUAG
>AJLR01000045.1/134981-135064 Bacillus azotoformans LMG 9581 contig45, whole genome shotgun sequence.
UAAUGACAAAGAUGCUAUGAAAAACUACCUAUAUUUGGGCACUUG-GGUAUUUUUGAGCG
AGUAGUGCAACCGACUUUUUUAAAG
>CP001878.2/854191-854275 Bacillus pseudofirmus OF4, complete genome.
UAAAUUGACGGAUACGUUGAAAACUUCUCUGUAAUUGGGCGCUUU-GAGAAGUUGGAGUA
AGUAGCGCAACCGGCCGAUAAAGGG
>CP002630.1/1070287-1070204 Marinithermus hydrothermalis DSM 14884, complete genome.
GCUUCCCCUAGCGGCGAGGAAGCCUGUCCUGUACGUGGGCGCCUG-GGGCAGGUGGAGCC
AGUGGCGCAACCGGCUAGGGGAUCU
>CP002630.1/2135386-2135469 Marinithermus hydrothermalis DSM 14884, complete genome.
CGGGCCCUUGGAGGCGAUGAACCCUGCCCGUGAACUGGGCGCCUG-GGGCGGGGGGAGCC
AGUGGCGCAACCGGCCAAGGGAGGG
>LFZU01000001.1/2030223-2030139 Bacillus sp. FJAT-27231 Scaffold1, whole genome shotgun sequence.
AAGAUCUAUGGAGGCAAAGAAAGAUCAUCUGCAUUUGGGCGCUUUGGGUGAUUGGGAGCC
GGUAGCGCAACCGACCAUAAAAUUU
>MELT01000124.1/6717-6802 Actinobacteria bacterium RBG_19FT_COMBO_36_27 rbg_19ft_combo_scaffold_6779, whole genome shotgun sequence.
UUAGAUAAUAGAGGCUAAGACUUACAUUUCAUAAUUGGGCAUCUCGAAAUGUAAAGAGCC
AGUGAUGCAACCGGCUAUUAUUUUG
>MEYG01000191.1/3050-2965 Candidatus Atribacteria bacterium RBG_16_35_8 RBG_16_scaffold_83741, whole genome shotgun sequence.
UUAGAUAAUAGAGGCUAAGACUUACAUUUCAUAAUUGGGCAUCUCGAAAUGUAAAGAGCC
AGUGAUGCAACCGGCUAUUAUUUUG
>MSLS01000003.1/274317-274400 Bacillus sp. MRMR6 scaffold_2, whole genome shotgun sequence.
GUUUUAUUGGGAAGCGUUGAAGUAUAACCUUUAUCUGGACACUUG-GGUUGUAUGGAGCU
AAUAGUGUAACCGGCCCUCUUAUUU
>CP017253.1/2944354-2944271 Clostridium taeniosporum strain 1/k, complete genome.
AGUGAAGUUGGAAACUGUGAUUAGUUCUCUUAAUUUGGGCACCUU-GAGAGCUAUGAGUU
AGUGGUGCAACCCGCCAGCAAUUAA
>URS0000ABB0DC_373903/1-84 Halothermothrix orenii H 168 Cyclic di-GMP-II riboswitch
UAUUGAAUGGGAAGCUAUGAACUCUUCUUUGUACGUGGUCACUUG-AAGGAGAGGGAGCU
AGUAGUGAAACCGCCCCGACCGGGG
>AP012157.1/868334-868251 Solibacillus silvestris StLB046 DNA, complete genome.
UUUACAAUGGGAGACUAUGAAGUACAUCCUUUAAUUGGGCACCUU-GGAUGUAUGGAGUC
AGUGGUGCAACCGGCCUCACAACAU
>MAQX01000033.1/108932-109013 Bacillus sp. FJAT-26390 scaffold5, whole genome shotgun sequence.
AAAAGCUAGGGAAGCGAUGAAGUAUAAUCUGCAUAUGGACACUUG-GAUUAUAUGGAGCC
AAUAGUGUAACCGGCCCU--CUUAG
>URS0000AB7AAA_272563/1-86 Clostridioides difficile 630 Cyclic di-GMP-II riboswitch
AAAUAUUAUAGAGAUGUUGAAGUAUAUUCUAUUAUUGGGCACCUUUGGAUAUACUGAGUC
AGUGGUGCAACCGGCUAUGAAUAUA
>URS0000AB7AAA_367459/1-86 Clostridioides difficile QCD-32g58 Cyclic di-GMP-II riboswitch
AAAUAUUAUAGAGAUGUUGAAGUAUAUUCUAUUAUUGGGCACCUUUGGAUAUACUGAGUC
AGUGGUGCAACCGGCUAUGAAUAUA
>URS0000AB7AAA_455631/1-86 Clostridioides difficile QCD-66c26 Cyclic di-GMP-II riboswitch
AAAUAUUAUAGAGAUGUUGAAGUAUAUUCUAUUAUUGGGCACCUUUGGAUAUACUGAGUC
AGUGGUGCAACCGGCUAUGAAUAUA
>CP001824.1/1154769-1154853 Sphaerobacter thermophilus DSM 20745 chromosome 2, complete sequence.
CGAAACGUCGGAGACGUUGAGGCGCAGGCUGUAUCUGGGCACCUC-GCCUGCGCCGAGUC
UGAGGUGCAACCGGCCGACCCUUUG
>FQZO01000003.1/412976-413058 Clostridium amylolyticum strain DSM 21864 genome assembly, contig: Ga0131114_103
UUUAUUAAAGGAGACAUAGAAGCAUAUACUU-AUCUGGGCACUUU-GUAUAUGUGGAGUC
GCUAGUGCAACCGACCUUAAUUGUA
>CCAX010000001.1/64134-64216 Oceanobacillus picturae, S1, WGS project CCAX01000000 data, contig: 000001
AAAUAGA-CGGAUGCUAUGAAGGAUUAUCUCUAUGUGGGCACUUU-GAUAAUUUGGAGCA
AGUAGUGCAACCGACCUGACUGUGU
>CP001962.1/1638487-1638571 Thermus scotoductus SA-01, complete genome.
AGGCACCUCGGAGGCGAGGAAGCCUGCCCUGCAUCUGGGCGCCUG-GGGCAGGUGGAGCC
AGUGGCGCAACCGGCCGAGGGCGGU
>FQZV01000006.1/17475-17392 Geosporobacter subterraneus DSM 17957 genome assembly, contig: EJ58DRAFT_scaffold00004.4
UCCUAAAAGGGAGACGAAGAUACAUGGCCUGAAGCUGGGCACCUA-GGCCAUGAAGAGUC
AGUGGUGCAACCGACCCAAUUAGCA
>MAQX01000022.1/245715-245796 Bacillus sp. FJAT-26390 scaffold3, whole genome shotgun sequence.
CAAGCAUAGGGAGACGUUGAAAUGCGUUUAGUAUCUGGGCACCUU-AAACGCAUGGAGUC
AGUGGUGCAACCGUCCCAAAAUG--
>MGOE01000083.1/963-880 Chloroflexi bacterium RBG_16_72_14 RBG_16_scaffold_3245, whole genome shotgun sequence.
GAAACGCUCGGACGCGCUGAUGCCCCCACCUGAAUUGGGCACUUAGGUGGGGGUGGAGCG
AGUAGUGCAACCGACCGA--CUUUC
>AJLR01000045.1/141513-141594 Bacillus azotoformans LMG 9581 contig45, whole genome shotgun sequence.
AAUAUGAAAAGAUGCUAUGAAGAAUCUCCUAUAUUUGGGCACUUG-GGUGAUUCAGAGCA
AGUAGUGCAACCGGCUUGAAAUC--
>FRAC01000006.1/173721-173637 Anaerocolumna jejuensis DSM 15929 genome assembly, contig: EJ31DRAFT_scaffold00001.1
UAGGAGAAAUGAUGCGAGGAACUUAUGUAAAUAUCUGGGCACUUUGGGCAUAAGGGAGCG
AGUGGUGCAACCGGCAUUUUUUUUA
>MGMJ01000118.1/5444-5527 Chloroflexi bacterium GWC2_73_18 gwc2_scaffold_677, whole genome shotgun sequence.
AAGACGCUCGGACGCGCUGAAGCGCCGCCUG-AAAUGGGCACUUAGGGUGGCGCGGAGCG
ACUAGUGCAACCGACCGGCUUUCGA
>CP012502.1/2923556-2923473 Bacillus beveridgei strain MLTeJB, complete genome.
AUCGAAUCAGGAAGCAAUGAUGAAAUGUUUUUAAUUGGGCACUUU-GACAUUUCGGAGCG
AGUAGUGCAACCGGCCAAAUGAGAG
>CP002084.1/961690-961774 Dehalogenimonas lykanthroporepellens BL-DC-9, complete genome.
AUAACAACAGGAAGCGUUGAACCGUCACCUGUAUGUGGUCACUUG-GGUGACGGGGAGCC
CCUAGUGAAACCGGCCUGAUAUUUU
>MZGV01000013.1/8654-8736 Clostridium oryzae strain DSM 28571 CLORY_contig000013, whole genome shotgun sequence.
UUUAUACUCGGAAAUAAAGAAACACAUCCUCUAUCUGGGCACCUU-GGAUGUGCGGAGUU
AAUGGUGCAACCGGCC-AGUAUAUA
>FUWV01000015.1/19808-19890 Garciella nitratireducens DSM 15102 genome assembly, contig: BP36DRAFT_scaffold00015.15
AGCAAUAAGGG-UACAAUGAAAUAUGUCCUCUAUUUGGGCACUUA-GGACAUAUGGAGUG
AGUAGUGCAACCGACCCUUUCAAAU
>CAGS01000727.1/2791-2708 Nitrolancea hollandica Lb, WGS project CAGS01000000 data, contig: 00090-1568
AAAUUUA-CGGAGGCUACGACGCGUAAGUUGUGAAUGGGCACCUA-ACUUGCGCUGAGCC
AGUGGUGCAACCGGCCGAUGAAUUU
>URS0000D665F3_12908/1-84 unclassified sequences c-di-GMP-II-GAG riboswitch
UAGUACACAGGAAGCUGUGAACCGCCGCCUGUAAAUGGUCACUUG-GGCGGUGGGGAGCU
AAUAGUGAGACCGGCCUGAAAGCAG
>MRTD01000006.1/104029-103947 Paenibacillus sp. FSL A5-0031 NODE_6_length_370656_cov_1.54701_ID_5135, whole genome shotgun sequence.
ACAAGCAUGGGAGACGUUGAAAUGCGUUUAGUAUCUGGGCACCUU-AAACGCAUGGAGUC
AGUGGUGCAACCGUCCUGA-AAUGA
>MNYC01000060.1/6288-6374 Bacterium CG2_30_37_16 isolate CG2_30_37_16 cg2_3.0_scaffold_8618_c, whole genome shotgun sequence.
GGGUAAAGCGAAAGCUUUGACCCAUAACCUAUACGUGGUCACCUUAGGUUAUGGAGAGCU
AGUGGUGAAACCGGUCGCAUUUUUU
>CAGS01000143.1/13283-13199 Nitrolancea hollandica Lb, WGS project CAGS01000000 data, contig: 00227-1568
CAAACAAACGGCGGCAAUGAUGCGCGGGUUGUAUGUGGGCACCUG-ACCUGCGCUGAGCC
AGUGGUGCAACCGGCCGAUGGAAUU
>CP007161.1/1566408-1566492 Virgibacillus sp. SK37, complete genome.
AAUAAAGUAGGAGGCGAUGAGUGGUUACCUGUAUAUGGGCACUUU-GGUAAUCAGGAGCA
AGUAGUGCAACCGGCCGACUUCAUU
>MZGT01000043.1/13141-13223 Clostridium chromiireducens strain DSM 23318 CLCHR_contig000043, whole genome shotgun sequence.
UAUGUUAUAGGGAACGAUGAUUCAUAUAUUU-AUUUGGGCACUUU-AUAUGUGAUGAGUU
AAUAGUGCAACCGACCUUUAUAGUU
>JPMD01000001.1/132165-132248 Clostridium sulfidigenes strain 113A c1, whole genome shotgun sequence.
AAAUAUAAAGGGAAUUAUGAAAUGUAGUCUGUACUUGGGCGCUUG-GACUACAGGGAGUU
AGUAGCGCAACCCACCUUUAUCUUA
>CP011058.1/942029-942112 Paenibacillus beijingensis strain DSM 24997, complete genome.
CAAAAUAUUGGGAGCGAUGAAUCCUAAUCUGCAACUGGGCACUUG-GGUUAGGAUGAGCU
AGUAGUGCAACCGACCAUUUUCCAA
>URS0000D696FF_1151274/1-86 Clostridioides difficile CD69 c-di-GMP-II-AAU riboswitch
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAGAUAUAUGAAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>CP003639.1/879108-879192 Desulfosporosinus acidiphilus SJ4, complete genome.
UACAAAUUAGGAAGUUUAGAAACAUGUAUUAUAUUUGGGCGCUUU-AUACAUGUGGAACA
AGUAGCGCAACCGGCCUGGUUUUAU
>URS0000D686BE_1121377/1-85 Deinococcus apachensis DSM 19763 c-di-GMP-II-GAG riboswitch
CUGGCUGGUAGGGGCGAUGAAGCGUGUCCUGUAUUCGGGCACCUG-GGACGCGCGGAGCC
AGUGGUGCGACCGACUAUCCGUCAA
>ALXI01000112.1/91119-91037 Clostridium sp. Maddingley MBC34-26 contig_206_8, whole genome shotgun sequence.
UGACAAGUUGGAAACUAUGAUGAUUUCUUUU-AUUUGGGCACCUU-AAGAAGUCGGAGUU
AGCGGUGCAACCUGCCAACAAUUAA
>URS0000C04FB2_1196322/1-83 Clostridium sp. Maddingley MBC34-26 Cyclic di-GMP-II riboswitch
UGACAAGUUGGAAACUAUGAUGAUUUCUUUU-AUUUGGGCACCUU-AAGAAGUCGGAGUU
AGCGGUGCAACCUGCCAACAAUUAA
>LWAE01000002.1/556285-556368 Clostridium magnum DSM 2767 CLMAG_contig000002, whole genome shotgun sequence.
UAUAGAGUUGGAAGCGAUGAAAAAUUUCCUAUAUAUGGGCACCUG-GGAAGUUUAGAGUU
AGUGGUGCACCCUGCCAACAAUUAA
>MGNT01000172.1/23515-23432 Chloroflexi bacterium RBG_16_57_8 RBG_16_scaffold_8039, whole genome shotgun sequence.
ACCCUGGCGGGAGGCAUAGAACCGCCACCUGUAUUUGGUCACUUG-GGUGGUGGGGAGCC
AACAGUGAAACCGACCUGAUGAGGG
>CP006763.1/3826714-3826631 Clostridium autoethanogenum DSM 10061, complete genome.
GAAAAUAUGGGAAACUAUGAAAAAUUUCUUCUAAUUGGGCACUUU-GGAAAUUUGGAGUU
AAUAGUGCAACCGGCCAGCUAUAUA
>LQXD01000044.1/1046-963 Anaerobacillus sp. NB2006 Ga0137927_1044, whole genome shotgun sequence.
AAAGCUUUAGGGAGCGACGAAAAACUAUUUUUAUUUGGGCACUUG-AAUAGUUUGGAGCU
AAUAGUGCAACCGUCCUAAUCUGCU
>LYPA01000076.1/78486-78569 Paenibacillus sp. 1DrF-4 scaffold5, whole genome shotgun sequence.
AAAGAUAAGGGAGACGUUGAAAUGCGCCUUGUAUCUGGGCACCUU-AGGCGUAUGGAGUC
AGUGGUGCAACCGCCCCGACGAUAU
>CP007161.1/236832-236750 Virgibacillus sp. SK37, complete genome.
UUAUGAUAAGGAAGCAAUGAGUAAACAAUCUUAUGUGGGCACUUG-AUUGUUUAAGAGCU
AAUAGUGCAACCGACCUUUUUUAU-
>URS0000D66428_12908/1-85 unclassified sequences c-di-GMP-II-GAG riboswitch
UCAUCCUUCGGAGGCGAUGAAGCCUGUCCUGUAUUCGGGCGCUUG-GGACAGGUGGAGCC
AGUAGCGCGACCGGCCGAACGAUCC
>MRTK01000010.1/58708-58627 Paenibacillus sp. FSL H8-0548 NODE_10_length_160209_cov_1.62876_ID_11278, whole genome shotgun sequence.
CAAGCAUAGGGAGACGUUGAAAUGCGUUUAUUAUCUGGGCACCUU-AAACGCGUGGAGUC
AGUGGUGCAACCGUCCCAAAAUG--
>JMFY01000021.1/10450-10534 Clostridium sp. HMP27 Clostridium-HMP27_contig_21, whole genome shotgun sequence.
AAACUUUAGGGAAGCUUUGAAGUACAUGCUAUAUCUGGGCAUCUAGGCGUGUAUGGAGUU
AAUGAUGCAACAGACCCUAUACUUA
>MSDU01000021.1/3222-3139 Domibacillus antri strain XD80 WGS_contig_21, whole genome shotgun sequence.
AACAAUUGUGGAAGCGAUGAACAACCAUUUGUAUGUGGGCACUUG-AAUGGUUGGAAGCG
AGUAGUGCAACCGACCCUAUUAUUU
>CM001240.1/5161061-5160980 Clostridium sp. DL-VIII chromosome, whole genome shotgun sequence.
AAUUAAGUUGGAAAUGUUGAAGGAUCUCCUUAUUUUGGGCACCUU-GGGGAUUUGGAGUU
AAUGGUGCAACCGGCCAA--UGAUU
>BDLO01000001.1/1042065-1041981 Coriobacteriaceae bacterium EMTCatB1 DNA, scaffold1.
UGCGGUU-CGGAGGCGAUGACUCGCUGCCCGUACGUGGGCGCCUUGGGCGGCGACGAGCC
AGUGGCGCAACCGGCCGAGAGCGCG
>URS0000D66CA2_12908/1-84 unclassified sequences c-di-GMP-II-GAG riboswitch
AUAGUUGGUAGAGGCUAAGAACUUCGUCCUGUAUGUGGGCACCUG-GGGCGAAGGAAGCC
AAUGGUGCGACCGUCUACCGUUUAA
>LQXD01000043.1/2339-2420 Anaerobacillus sp. NB2006 Ga0137927_1043, whole genome shotgun sequence.
AAACAUUUGGGAAGUUUUGAAGUAUAACCGUUAACUGGACGCUUA-GGUUAUAUGGAGCU
AGUAGUGUAACCGACCCA--UGGUA
>URS0000D6B8D3_1121377/1-84 Deinococcus apachensis DSM 19763 c-di-GMP-II-GAG riboswitch
CUAUGAACACGAGGCAAUGAAACGUUCGAUGUAUUCGGGCACCUG-UCGAACGUGGAGCU
AGUGGUGCGACCGACGUUCUCAUGC
>URS0000AB5269_243230/1-85 Deinococcus radiodurans R1 Cyclic di-GMP-II riboswitch
CUGUCGAAGAGACGCGAUGAAUCCCGCCCUGUAUUCGGGCACCUC-GGACGGGAGGAGCA
AGUGGUGCGACCGGCUUUUCGUUGG
>URS0000ABC202_748727/1-84 Clostridium ljungdahlii DSM 13528 c-di-GMP-II-AAU riboswitch
UUAAAAGUUGAAAACAAUGAAAAAUUCUCUAUAAUUGGGCACCUG-GAGGAUUUGGAGUU
AGUGGUGCAACCUGCCAAUAGUCGA
>LFZU01000001.1/2180599-2180516 Bacillus sp. FJAT-27231 Scaffold1, whole genome shotgun sequence.
CUUUAAAGUGGAAGCGAUGAAUAGUCAUUUGUAUGUGGGCACUUG-AAUGGCUUGGAGCG
AGUAGUGCAACCGACUCUUUUUUAG
>LIYN01000509.1/783-866 Deinococcus sp. UR1 contig_433, whole genome shotgun sequence.
CUGUCGGAGAGACGCGUUGAGCUACGUACUGUAUCCGGGCACCUG-GUACGUGGUGAGCG
AGUGGUGCGACCGGCUUUUCGUUCA
>JRJU01000005.1/38713-38630 Bacillus okhensis strain Kh10-101 contig05, whole genome shotgun sequence.
AACUUAGAAGGACGCGAUGAGUAAUUACCUGUAUGUGGGCACUUG-GGUAGUUAGGAGCA
AGUAGUGCAACCGGCCAGAUUUGUA
>URS0000D69AB7_12908/1-83 unclassified sequences Cyclic di-GMP-II riboswitch
AUCGAUUUCGGAUGCCUUGAUCCGACCGCUGAAUGUGGGCACUUAGGCGGCCGGGGAGCA
GGUAGUGCAACCGACCGU--UCCGC
>LOEZ01000038.1/48648-48734 Gracilibacter sp. BRH_c7a BRHa_1002209, whole genome shotgun sequence.
CUGAUAAAUGGAAGCUAUGAUAUGCUAUUAGAAUUUGGGCACCUAUAAUAGCAUGGAGCA
AGUGGUGCAACCGACCAUUGAACUU
>URS0000ABA502_290402/1-84 Clostridium beijerinckii NCIMB 8052 Cyclic di-GMP-II riboswitch
ACAAAGAUUGGGAACUAUGAAGAAUUCUCUGUAUUUGGGCAUCUU-GAGAAUUUAGAGUU
AAUGAUGCAACCCACCAAUCAAAAC
>FTOC01000007.1/7449-7367 Salimicrobium flavidum strain DSM 23127 genome assembly, contig: Ga0111645_107
CCAUCUCUAGGAAGCGUCGAUUGACUAUCCGUAUUUGGGCACUUG-GAUGGUCAGGAGCU
AGUAGUGCAACCGGCC-AGAGGACC
>URS0000AB624C_319795/1-84 Deinococcus geothermalis DSM 11300 Cyclic di-GMP-II riboswitch
UUCUUGUUCCGGGGCGAAGAGGCGUGUGGUGUAUCCGGGCACCUG-CCACACGCGGAGCC
AGUGGUGCGACCGACGAACCGUGAA
>FQZB01000042.1/1730-1650 Clostridium cavendishii DSM 21758 genome assembly, contig: EJ30DRAFT_scaffold00040.40
UAUUUAGAAGGGAACGAUGAAAUAAAUCUUA-AUUUGGGCACUUU-AGAUUUAUGGAGUU
AGUAGUGCAACCGACCUC--AGUUG
>URS0000D6683D_272558/1-82 Alkalihalobacillus halodurans C-125 Cyclic di-GMP-II riboswitch
AAUCAAUAGGGAAGCAACGAAGCAUAGCCUUUAUAUGGACACUUG-GGUUAUGUGGAGCU
ACUAGUGUAACCGGCCCUCCUUU--
>CP000924.1/1129065-1129148 Thermoanaerobacter pseudethanolicus ATCC 33223, complete genome.
AUUUUAUAAAGAGUAGAUGAAGUGAGGCUAU-AUGUGGGCACUUUAUGCCUCACGGAUAC
AGUGGUGCAACCGGCUUUAUGUCGG
>URS0000AB8333_340099/1-84 Thermoanaerobacter pseudethanolicus ATCC 33223 Cyclic di-GMP-II riboswitch
AUUUUAUAAAGAGUAGAUGAAGUGAGGCUAU-AUGUGGGCACUUUAUGCCUCACGGAUAC
AGUGGUGCAACCGGCUUUAUGUCGG
>JXLP01000024.1/2126-2209 Bacillus badius strain MTCC 1458 Contig24, whole genome shotgun sequence.
AUAAAAAGUGGAUGCUAGGAACAAUUUACCUUAUUUGGGCGCCUG-GUAGAUUGGGAGCG
AGUGGCGCAACCGUCCUUAAUUUUU
>MGNC01000114.1/11159-11077 Chloroflexi bacterium RBG_13_60_13 RBG_13_scaffold_4244, whole genome shotgun sequence.
AGUGAUCCGGG-GACGUUGAACCGCCACCUUCAUGUGGUCACUUG-GGUGGCGGGGAGUC
AAUAGUGAAACCGACCCAGAAAGCG
>ACVI01000071.1/13890-13972 Clostridium carboxidivorans P7 ctg00111, whole genome shotgun sequence.
AUUAAAA-AGGAGACAAAGAAGUAUACUUAU-AUUUGGGCACCUUAAAGUAUACAGAGUC
AAUGGUGCAACCGACCUGAUUUUAC
>URS0000D665E6_12908/1-85 unclassified sequences c-di-GMP-II-GAG riboswitch
AGAGCGUUCGGACGCGAUGAAACCCGGCCCGCAUUCGGGCGCUUG-GGCCGGGUGGAGCG
AGUAGCGCGACCGCCCGCACGUUCC
>CCXR01000001.1/4210218-4210301 Bacillus sp. B-jedd genome assembly, contig: CONTIG000001
UCCACUUGGGGAAGCGUUGAUAUAUAGCCUUUACUUGGACACUUG-GGCUAUAUGGAGCU
AUUAGUGUAACCGGCCCUCUUAUUA
>CP016761.1/402402-402486 Fictibacillus arsenicus strain G25-54, complete genome.
GAAAUUAAUGGAAGCGUGGAAGCAUACUUUUUAUUUGGGCAUCUAUAAGUAUGUGGAGCU
AGUGAUGCAACCGGCCGGCAUAAGA
>MZGT01000082.1/6948-6865 Clostridium chromiireducens strain DSM 23318 CLCHR_contig000082, whole genome shotgun sequence.
UACAGGAUUGGGAACUAUGAAGAAUUCUCUUUAUUUGGGCAUCUU-GAGAAUUUGGAGUU
AAUGAUGCAACCCACCAAUCAAAAC
>URS0000D6A5E7_12908/1-85 unclassified sequences c-di-GMP-II-GAG riboswitch
GGCUUCUCCGGAGGCGAUGAAACCUGUCCCGUACUCGGGCGCUUG-GGACAGGUGGAGCC
AGUAGCGCGACCGGCCGGAAGAUCC
>JRUN01000012.1/42731-42648 Bacillus ginsengihumi strain M2.11 NODE_12, whole genome shotgun sequence.
CUUAAAAAAAUAAGCCAUGAAUUGUUAUCUGUAUUUGGGCACUUA-GAUAACAAGGAGCC
AGUAGUGCAACCACCUAUUUUUUAG
>JNVM01000005.1/216103-216020 Paenibacillus sp. MSt1 Contig_5, whole genome shotgun sequence.
AGAUACAUGGUAAGCGAUGAUUUCGAAUCUGUAUCUGGGCACUUG-GAUUCGACGGAGCU
AGUAGUGCAACCGGACCACCCUUCA
>JPMD01000006.1/35639-35555 Clostridium sulfidigenes strain 113A c6, whole genome shotgun sequence.
AGUAAGUUUAGAUACAAUGAUACAACUUUUUUAUUUGGGUACCUUGAAAGUUGUUGAGUU
AAUGGUACAACCGGCUAAAUUAUAA
>CP003359.1/1824245-1824163 Halobacteroides halobius DSM 5150, complete genome.
AAUAAUUUAGG-AACGAUGAAGUAUAACUCAUAUUUGGUCACCUA-GGUUAUAUGGAGUU
AAUGGUGAAACCGUCCUAUAUUCUU
>MXQD01000004.1/465148-465064 Paenibacillus sp. MY03 contig4, whole genome shotgun sequence.
UAUUAUAUGGGAGACGAAGAAGUGCGUUUAGUAUCUGGGCACCUUACAACGCAUGGAGUC
AGUGGUGCAACCGCCCCAACGAAGU
>AGAF01000182.1/569-487 Desulfosporosinus sp. OT TOU.assembly.26, whole genome shotgun sequence.
UGUAAAG-AGGAAAUUUUGAAGCAUGUAUCUUAUUUGGGCGCUUG-AUACAUGUGGAGUA
AGUAGCGCAACCGGCCUGGUUUAUA
>CAGS01000074.1/5185-5269 Nitrolancea hollandica Lb, WGS project CAGS01000000 data, contig: 00165-1568
CUAGCCAACGGAUGCAAUGAAGCACGGGCUGUAUGUGGGCACCUUGGCCUGUGCUGAGCG
AGUGGUGCAACCGGCCGAU-CCACG
>CP003359.1/491957-492040 Halobacteroides halobius DSM 5150, complete genome.
GAUUAUUUAGGAGACAGAGAAGUAUAAUCCAUAUCUGGUCACCAG-GAUUAUAUGGAGUC
AAUGGUGAAUCCGACCUAAAUCUUU
>LWAE01000001.1/452516-452597 Clostridium magnum DSM 2767 CLMAG_contig000001, whole genome shotgun sequence.
UACUAUA-GGGAAACCGUGAUCCAUAUGCUU-AAUUGGGCACUUU-GUAUAUGGUGAGUU
AGUAGUGCAACCGACCUUUAUUUUU
>URS0000AB7C92_370438/1-88 Pelotomaculum thermopropionicum SI Cyclic di-GMP-II riboswitch
GAGAUAGUGUGAAGCAGUGAUCUUGCAGCUA-AUAUGGUCACUUUGGCUGCAAGUGAGCU
AAUAGUGAAACCGGCACACUGAUGC
>CP005385.1/1784054-1783969 Meiothermus ruber DSM 1279 genome.
ACCAAGUUCGGAGGUGAUGAUCCGUUUCCCA-AUCUGGGCACCAAGGGAAACGGGGAGCC
AGUGGUGCAACCGGCCGAACCCAAA
>BAUV01000008.1/47761-47678 Bacillus akibai JCM 9157 DNA, contig:contig_8.
UAACUUUAGGGGUGCUAUGAAAGAUAGCCUUUAUUUGGACACUUG-GGCUAUGUGGAGCU
AGUAGUGUAACCGACCCUCUUAUUU
>BAUV01000013.1/80324-80241 Bacillus akibai JCM 9157 DNA, contig:contig_13.
CCAAAAUAGGGAAGCGAUGAUGUAUAGCCUGUGUUUGGACACCUUGGGGUAUACGUAGCU
AGUGGUGUAACCGGCCCUCUUAGG-
>CP003383.1/390114-390030 Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence.
CUGACUGAUAGAAGCUUUGAAGCGUGUCCUGUACACGGGCACCUG-GGACGCGUGGAGCC
AGUGGUGCGACCGGCUAUUAGUCAC
>URS0000C5A129_937777/1-85 Deinococcus peraridilitoris DSM 19664 Cyclic di-GMP-II riboswitch
CUGACUGAUAGAAGCUUUGAAGCGUGUCCUGUACACGGGCACCUG-GGACGCGUGGAGCC
AGUGGUGCGACCGGCUAUUAGUCAC
>CM001240.1/3329094-3329177 Clostridium sp. DL-VIII chromosome, whole genome shotgun sequence.
AUAUAAAUUGGACACUAUGAUAAGUUUUCUGUAUUUGGGUACCUG-GAUAACUUUGAGUG
AUUGGUACAACCGACCAGCAUAAAA
>MGNC01000128.1/3506-3424 Chloroflexi bacterium RBG_13_60_13 RBG_13_scaffold_49904, whole genome shotgun sequence.
CCAGACCAAGGGGGCAUUGAACCGCCGUCCGUAACUGGUCACUUG-GACGGUGGGGAGCC
AGUAGUGAAACCGACCUUCGCAGG-
>FRCZ01000003.1/219370-219453 Gracilibacillus kekensis strain CGMCC 1.10681 genome assembly, contig: Ga0079828_103
AGUUAGAACAGAGACAUUGAUCAUUUACCUUAAUUUGGGCACUUU-GGCAAAUGGGAGUU
AGUAGUGCAACCGGCUGGCAUCAUA
>MGNC01000157.1/2626-2546 Chloroflexi bacterium RBG_13_60_13 RBG_13_scaffold_7413, whole genome shotgun sequence.
---GCCAGGGGAGACGCUGAACCGCUGCCUGUAUCUGGUCACUUG-GGCAGCGGGGAGUC
AAUAGUGAAACCGACCUUCAAAGGU
>MZGV01000060.1/9315-9397 Clostridium oryzae strain DSM 28571 CLORY_contig000060, whole genome shotgun sequence.
AAUAUAGUUGGAAAUUAUGAAGGAUUUUCAUUA-UUGGGCACUAU-GAAAAUCUGGAGUU
AGUAGUGCAACCGACCAACAACCAG
>URS0000AB2ABE_12908/1-86 unclassified sequences Cyclic di-GMP-II riboswitch
GAGGCGUCCGGAGGCGAUGACCCGCGAUCCCCAUUUGGGCAUCAAGGGACGCGGCGAGCC
AGUGAUGCAACCGGCCGGACGGCUA
>CP002105.1/21848-21766 Acetohalobium arabaticum DSM 5501, complete genome.
UUAAUAAUGAG-AACGUUGAAGUAUAACUUGUAUUUGGUCACCUA-AGUUAUAUGGAGUU
AGUGGUGAAACCUCCUCAUAUUUAU
>URS0000ABB90A_574087/1-83 Acetohalobium arabaticum DSM 5501 Cyclic di-GMP-II riboswitch
UUAAUAAUGAG-AACGUUGAAGUAUAACUUGUAUUUGGUCACCUA-AGUUAUAUGGAGUU
AGUGGUGAAACCUCCUCAUAUUUAU
>AKKB01000008.1/18097-18014 Brevibacillus sp. CF112 PMI08_contig_16.16, whole genome shotgun sequence.
UUCAAUAAGGAAAGCGAAGAUCAGCCGUUUGUAUGUGGGCACUUG-AAUGGCUGGGAGCG
AGUAGUGCAACCGACCCUAUUUUCG
>CP012602.1/1027405-1027487 Bacillus sp. FJAT-18017 genome.
UCUAAUAUGGGAAGCGAAGAUUUAUAGCCUGUAAAUGGACACUUG-GGCUAUAAGGAGCU
ACUAGUGUAACCGGCCCU-CUAAGC
>CP016761.1/3682962-3682880 Fictibacillus arsenicus strain G25-54, complete genome.
ACAAAGUGUGG-AGCAAUGAAUGCCGUUCUGUAAUUGGGCGCUUG-GAACGGCAGGAGCU
AGUAGCGCAACCGACCGCUUCUUUU
>FQZB01000021.1/77151-77234 Clostridium cavendishii DSM 21758 genome assembly, contig: EJ30DRAFT_scaffold00019.19
GAACCUAAAGGGAACUGAGAUAUGAAUCUUUUAUUUGGGCACUUU-AGAUUCAUGGAGUU
AGUAGUGCAACCGACCACAGUCUUU
>URS0000D6B335_317577/1-85 Deinococcus ficus c-di-GMP-II-GAG riboswitch
CGGGCGAAGAGAGGCUGCGAACCCCGCCCUGUAUCCGGGCACCUC-GGGUGGGGGGAGCC
AGUGGUGCGACCGGCUUUUCGACUU
>URS0000AB525E_401526/1-84 Thermosinus carboxydivorans Nor1 Cyclic di-GMP-II riboswitch
ACUGCAA-UGGGUGUGAUGAAGUCCGGACAGUAUGUGGGCACUUA-GUCCGGACCGAGCA
AGUAGUGCAACCGACCAGAUGCAAA
>MGNC01000005.1/1556-1473 Chloroflexi bacterium RBG_13_60_13 RBG_13_scaffold_107532, whole genome shotgun sequence.
AGUCCCGAGGAAGGCGUCGAGCCGCCGUCUCGAUCUGGUCACUUG-GACGGCGGGGAGCC
AAUAGUGAAACCGAUCCGAAGGGGU
>URS0000D66D71_12908/1-84 unclassified sequences c-di-GMP-II-GAG riboswitch
UAGUGGGGUAGAGGCUAAGAACUUCGUCCUGUAUGUGGGCACCUG-GGACGAAGGAAGCC
AAUGGUGCGACCGACUACCAAGGUC
>JAQV02000019.1/30191-30109 Bacillus sp. SJS contig_19, whole genome shotgun sequence.
GUUGAAUAGAGAGACAGAGAAUAACCAUCUUUAUUUGGGCGCUUG-GAUGGUUUGGAGUC
AGUAGCGCAACCGGCUA-AUUAAAC
>LOEW01000278.1/1310-1227 Desulfosporosinus sp. BRH_c37 BRHa_1006747, whole genome shotgun sequence.
AGAUAUCGAGGGGAUUUUGAAGCAUGUAUUUUAUUUGGGCGCUUG-AUACAUGUGGAAUA
AGUAGCGCAACCGACCUGGUUUAUA
>CP006721.1/1642936-1643019 Clostridium saccharobutylicum DSM 13864, complete genome.
ACAAGGAUUGGGAACUGUGAAGAAUUCUCUCUAUUUGGGCAUCUU-GAGAAUUUUGAGUU
AAUGAUGCAACCCACCAAUCAAAAC
>FPIU01000004.1/454726-454643 Paenibacillus sp. UNCCL117 genome assembly, contig: FG16DRAFT_scaffold00003.3
UGAACUUAGGUAAGCAAUGAAUUCGGAUCUGUAUGUGGGCACUUG-GAUUCGAAGGAGCU
AGUAGUGCAACCGGACCACCUUUCU
>LIZU01000068.1/3302-3218 Candidate division Zixibacteria bacterium DG_27 WOR1_52_54_21129, whole genome shotgun sequence.
UGUGAUCCCGGAGGCGAUGAUUUGGGGGCUGUAUGUGGUCACUUG-GCCCCCAGUGAGCC
AAUAGUGAAACCGACCGGAGGCAUG
>CP018258.1/128801-128716 Dehalogenimonas formicexedens strain NSZ-14 chromosome, complete genome.
GUAAUUCCAGGAUGUAAUGAUCCGCAGCUUGUAAUUGGUCACUUUAGGUUGCGGGGAGCA
AGUAGUGAAACCGGCCUGACGUAAG
>LADT01000013.1/49948-49868 Clostridiaceae bacterium BRH_c20a BRHa_1001033, whole genome shotgun sequence.
UUUCCCAAGGGGGACUAUGAAGUAUGUUCUGUAACUGGGCGCCUA-GAACAUACCGAGUC
AGUGGUGCAACCGACCC---GGUCC
>URS0000D6A60F_12908/1-84 unclassified sequences c-di-GMP-II-GAG riboswitch
CAGCAAGCAGGAGGCAACGAACUGUCACCUGUAUUUGGUCACUUG-GGUGGCGGGGAGCC
AGUAGUGAGACCGGCCUGAAGAAGG
>LGTO01000007.1/157372-157289 Virgibacillus pantothenticus strain DSM 26 super13, whole genome shotgun sequence.
UUUUUAUGAGGGAGCAAAGAUGUGCGAUAAU-AUGUGGGCACCUUAAAUCGCAUGGAGCU
AGUGGUGCAACCGACCUCUACGUAA
>MGMS01000040.1/1663-1747 Chloroflexi bacterium RBG_13_51_36 RBG_13_scaffold_42690, whole genome shotgun sequence.
GGUUUAUUGGGAGGCAAUGAAGCACCAGCUACAUAUGGUCACUUG-GCGGGUGUCGAGCU
AGUAGUGAAACCGACCCAAAAAUGG
>LCBL01000003.1/66022-65939 Candidate division CPR2 bacterium GW2011_GWC1_41_48 UU65_C0003, whole genome shotgun sequence.
UUAGUCAGCGAAAGCUUUGAUCCGUACCACACAUGUGGUCACCUUUGGGUACGGGGAGCU
AGUGGUGAAACCGGUCGC--AAAAA
>ALXI01000002.1/29546-29629 Clostridium sp. Maddingley MBC34-26 contig_2, whole genome shotgun sequence.
AUAAAGAUUGGGAACAGUGAAGAAUUCUCUUUAUUUGGGCAUCUU-GAGGAUUCAGAGUU
UAUGAUGCAACCUACCAAUCAAAAC
>URS0000C37B2B_1196322/1-84 Clostridium sp. Maddingley MBC34-26 Cyclic di-GMP-II riboswitch
AUAAAGAUUGGGAACAGUGAAGAAUUCUCUUUAUUUGGGCAUCUU-GAGGAUUCAGAGUU
UAUGAUGCAACCUACCAAUCAAAAC
>ALXI01000097.1/63377-63458 Clostridium sp. Maddingley MBC34-26 contig_187_2, whole genome shotgun sequence.
UAAAUAAUUGG-AGCUAUGAAAAAUUCUUUU-AUCUGGGCACUUU-AAGAAUUGGGAGCU
AGUUGUGCAACCGACCAAUUAAGAC
>MGMW01000065.1/2350-2430 Chloroflexi bacterium RBG_13_53_26 RBG_13_scaffold_26064, whole genome shotgun sequence.
UUGAGUGGGGGGGACGCUGAACCACUACCUGUAUAUGGUCACUUG-GGUAGUGGGGAGUC
AAUAGUGAAACCGACCUUUCGA---
>CP002017.1/2052455-2052535 Kyrpidia tusciae DSM 2912, complete genome.
GUCUGGUUUGGAGGCAAUGAAAAACUGUCUGGAAUUGGGCGCUUG-GACAGUUGGGAGCC
AGUAGCGCAACCGGCCAAUGUC---
>FWXI01000032.1/29244-29327 Sporomusa malonica strain DSM 5090 genome assembly, contig: Ga0070592_132
AAAUAAAUAGGAUGUUAUGAAGGUGUAUCUGUAUGUGGACACUUG-GAUAUACUGGAGCA
AGUAGUGUAACCGGCCUUUUCUAAG
>JQCR01000003.1/204038-204122 Paenibacillus wynnii strain DSM 18334 unitig_3_1r, whole genome shotgun sequence.
GAAAAUUAGGGAAGCGAUGAUGUAUAAUCCUUACUUGGACACUUG-GGUUAUACGGAGCU
GGUAGUGUAACCGGCCCUCUUAGAA
>LCNJ01000011.1/17962-17879 Parcubacteria (Moranbacteria) bacterium GW2011_GWE2_47_10 UX75_C0011, whole genome shotgun sequence.
UUUUUUGGUGAGGGCAAUGAAUUGCAAUUAGUACUUGGGCACUUU-AAUUGCAAGGAGCC
AAUAGCGCAACCGAUCACUCUCCAG
>LOEW01000074.1/5359-5442 Desulfosporosinus sp. BRH_c37 BRHa_1001902, whole genome shotgun sequence.
AGAAAUCAAGGAAAUCUUGAAGCAUGUAUUGUAUUUGGGCGCUUA-AUGCAUGUGGAAUA
AGUAGCGCAACCGGCCUAGUUCAUA
>URS0000D6CAE7_12908/1-85 unclassified sequences c-di-GMP-II-GAG riboswitch
GGCUUCUCCGGCGGCGAUGAAACCUGUCCCGUAUUCGGGCGCUUG-GGACAGGUGGAGCC
AGUAGCGCGACCGGCCGGAAGAUCC
>ACVI01000016.1/6410-6491 Clostridium carboxidivorans P7 ctg00119, whole genome shotgun sequence.
UAUUAUAUUGGAAGCGUUGAACUACAUACUU-AAUUGGGCACUUU-GUAUGUAGGAAGCA
GCUAGUGCAACCGGCCAA-AUAUUG
>LBYN01000001.1/78831-78912 Parcubacteria bacterium GW2011_GWE1_40_20 UT89_C0001, whole genome shotgun sequence.
--UGGUAGAGAAAGCAAUGAAUUGUAGUCUCUAUUUGGACGCUUG-GACUACAAGGAGCU
AAUAGCGUAACCGGUCUAUUUUUUA
>URS0000D687CF_12908/1-84 unclassified sequences c-di-GMP-II-AAA riboswitch
UAAGGGUGAGACUGCAAUGAAGCCUGGUUUUUAUAUGGUCACUUG-AACCAGGGGGAGCA
AAUAGUGAAACCAGUCUCACCUUUU
>URS0000D6CFCE_12908/1-84 unclassified sequences c-di-GMP-II-AAA riboswitch
AUUAAUUAGGGAAGCUAUGAAGUAUAUUUUGUAUUUGGACACCUA-AAGUAUACAGAGCU
AAUGGUGCAACCACUCCCAACUAUA
>LQBF01000001.1/107853-107770 Delta proteobacterium ML8_D scaffold_0, whole genome shotgun sequence.
UAUAUUAUUAGAAGCGAUGAAGUUUUCCUUGAAUUUGGACGCUUG-AGGGAAAUGGAGCA
AAUAGCGUAACCGGCUAAUUGAGCC
>MGMW01000002.1/6779-6699 Chloroflexi bacterium RBG_13_53_26 RBG_13_scaffold_10408, whole genome shotgun sequence.
AGGGAACGGGGGAGCGCUGAACCACUGUCUUUAACUGGUCACUUG-GGCAGUGGGGAGCU
AAUAGUGAAACCGACC---UUCCCA
>MGNK01000124.1/25879-25796 Chloroflexi bacterium RBG_16_50_9 RBG_16_scaffold_3878, whole genome shotgun sequence.
AUUAUGGUGGGGGGCGUUGAACUACCACCCACAAUUGGUCACUGG-GGUGGUGGUGAGCC
AAUAGUGAAACCGACCCAUUGAGGU
>LFCP01000004.1/92684-92601 Parcubacteria bacterium C7867-006 C7867_00034, whole genome shotgun sequence.
GUUACUAAAGAAGGCGAUGAACCACAGUCUGUAUUUGGACGCUUG-GGCUGUGGGGAGCU
AAUAGCAUAACCGGUCUUUUUAGGC
>CP002770.1/2086514-2086431 Desulfotomaculum kuznetsovii DSM 6115, complete genome.
UAUAAGAGCGGAGGCCGUGAACCGCUGCCUGUAACUGGGCGCCUG-GGCAGCGGGGAGCC
GCUGGCGCACCCGGCCGCUUACCAG
>CP008852.1/2416403-2416319 Pelosinus sp. UFO1, complete genome.
GAUAUAGAUAGUUGUGAUGAAAUCCGUGAUGUAUUUGGGCACUUUAUCUAGGAUGGAACA
AGUAGUGCAACCGACUAACUUUAUG
>CP001791.1/652937-653016 Bacillus selenitireducens MLS10, complete genome.
UGCCCGAAUGGAAACGUUGAUGAGAUGACUGUAUGUGGGCACUUG-GUCAUUUCGGAGUG
AGUAGUGCAACCGGCCGAGCA----
>CP013653.1/5066735-5066653 Paenibacillus sp. 32O-W, complete genome.
UUUCAUUGAGGAAGCGAUGAACAGUCAUUCUUAACUGGGCACUUU-AAUGGCUGGGAGCG
AGUAGUGCAACCGACC-CGAUCAUG
>LMRV01000013.1/136907-136988 Paenibacillus sp. Soil522 contig_11, whole genome shotgun sequence.
GAAACAUAGGGAGACGUUGAUAUGCGCUUAGUAUUUGGGCACCUU-AAACGCAUGGAGUC
AGUGGUGCAACCGUCCCAAAACC--
>CP011058.1/896539-896456 Paenibacillus beijingensis strain DSM 24997, complete genome.
CUAUAAUUUGGGCGCGGAGAAACCGGAUCUGUAUAUGGGCACUUG-GAUCCGGCGGAGCG
ACUAGUGCAACCGACCACUUUCAAC
>MLQQ01000040.1/238136-238053 Anaerobacillus arseniciselenatis strain DSM 15340 Ga0137926_149, whole genome shotgun sequence.
CCAAAUAAUGGAUGUUAUGAUCGUUCAUCUGUACGUGGGCACUUA-GAUGAUCAGGAGCA
AGUAGUGCAACCGACCAAAUUUUGU
>MGOP01000323.1/629-543 Chloroflexi bacterium RIFOXYC12_FULL_59_14 rifoxyc3_full_scaffold_3838_curated, whole genome shotgun sequence.
AUCAUAGACAGAUGCAAUGAUGCAGUGUGUGUUUUUGGGCGCCAAACAUACUGCGGAGCA
AGUGGCGCAACCGACUGUCCAAGUU
>LQQV01000052.1/173868-173785 Brevibacillus parabrevis strain CN1 contig_22, whole genome shotgun sequence.
AUUUGAAGAGGAAGCGAUGAUUAGCCAUUUGUAUGUGGGCACUUG-AAUGGCUGGGAGUG
AGUAGUGCAACCGACCCUAUAUAGC
>CP020814.1/3291781-3291698 Bacillus krulwichiae strain AM31D, complete genome.
AAUAGUUUGGAAAGCAUAGAAAUACGACUUUUAUUUGGGCACCUU-AGUCGUAUUGAGCG
AUUGGUGCAACCGGCCUUUUAUGUU
>CP001962.1/1792779-1792694 Thermus scotoductus SA-01, complete genome.
AGGGCGUUCGGAGGCGAUGAACCGUGGACCCAAGAUGGGCGCCAAGGGACACGGGGAGCC
AGUGGCGCAACCGGCCGAACGUCGA
>CP006763.1/2847421-2847504 Clostridium autoethanogenum DSM 10061, complete genome.
AUAUUAAAGGGAAACGAUGAGAUAUGCACUUUAUAUGGGCAUCUA-GUGUGUAUUGAGUU
AACGAUGCAACCGGCCUUAUGAUUA
>LADP01000031.1/158439-158356 Peptococcaceae bacterium BRH_c8a BRHa_1005672, whole genome shotgun sequence.
AACCACUAGGGAAGCCAUGAAACACGGCCUGUAACUGGACACUUG-GGCCGUGCGGAGCU
GGUAGUGUAACCGGCCCUCUUAAAU
>LCDA01000008.1/9622-9539 Microgenomates (Collierbacteria) bacterium GW2011_GWA2_42_17 UV06_C0008, whole genome shotgun sequence.
UACGUCCUAGAAGGCAUUGAUUUAUAACCUCCAUUUGGUCACUUU-GGUUAUAAGGAGCU
AAUAGUGAAACCGUUCUAAAAAAAA
>JNVM01000010.1/413848-413765 Paenibacillus sp. MSt1 Contig_10, whole genome shotgun sequence.
UGAAGUCAGGUAGGCAAUGAACUCGAAUCUGUAUAUGGGCACUUG-GAUUCGAAGGAGCU
AGUAGUGCAACCGGACCAUCUUUCU
>URS0000D68021_12908/1-84 unclassified sequences c-di-GMP-II-GAG riboswitch
UAGUGGGGUAGAGGCUAAGAACUUCGUCCUGUAUGUGGGCACCUG-GGGCGAAGGAAGCC
AAUGGUGCGACCGCCUACCGUUUAA
>MSLS01000003.1/273336-273419 Bacillus sp. MRMR6 scaffold_2, whole genome shotgun sequence.
CGAUAUCAGGGAAGCUUUGAAGUAUAACCUUUAUCUGGACACUUG-GGUAAUAUGGAGCU
GGUAGUGUAACCGAUCCUCGAUUCA
>URS0000D65899_12908/1-83 unclassified sequences c-di-GMP-II-GAG riboswitch
GCCUUCUCCGGAGGCGAUGAAGCCUGUCCCUUACUCGGGCGCUUG-GGACAGGUGGAGCC
AGUAGCGCGACCGGCCGG--AAGAU
>ACJM01000003.1/182391-182476 Dethiobacter alkaliphilus AHT 1 ctg22, whole genome shotgun sequence.
AUCAACCAUAGAAGCAAUGACCAACCUCUUACAAUCGGGCGCCUUGAGAGGUUGAGAGCU
GGCGGCGCAACCGGCUAUGGCAGGC
>CP002536.1/513083-513167 Deinococcus proteolyticus MRP, complete genome.
UCUGUGGAGGGAGGUGAUGAUUCCCGUCCUGUAUCCGGGCACCUC-GGACGGGAGGAGCC
AGUGGUGCGACCGACUUUUCGUUGC
>MGMW01000055.1/5402-5485 Chloroflexi bacterium RBG_13_53_26 RBG_13_scaffold_21988, whole genome shotgun sequence.
-CAUUAUUGGGAAGCAAUGAACCACUGCCUGUACAUGGUCACUUG-GGCAGCGGGGAGCU
AGUAGUGAAACCGACCCAGAGCGGG
>URS0000ABB473_693977/1-85 Deinococcus proteolyticus MRP Cyclic di-GMP-II riboswitch
UCUGUGGAGGGAGGUGAUGAUUCCCGUCCUGUAUCCGGGCACCUC-GGACGGGAGGAGCC
AGUGGUGCGACCGACUUUUCGUUGC
>CP012502.1/1089516-1089600 Bacillus beveridgei strain MLTeJB, complete genome.
UAAAAAAUUGGAUGCGAUGAAGAAAUGGUACUAUGUGGGCACUUA-ACCAUUUCGGAGCA
AGUAGUGCAACCGGCCGGACGAAUC
>MGNC01000050.1/4377-4295 Chloroflexi bacterium RBG_13_60_13 RBG_13_scaffold_19882, whole genome shotgun sequence.
AAUCAUAGGGG-AGCUGUGAGGCACCGCCUGUAGGUGGUCACUUG-GGUGGUGCUGAGCU
AGUAGUGAAACCGACCCCGGCGGGU
>MGNH01000080.1/3567-3485 Chloroflexi bacterium RBG_16_48_7 RBG_16_scaffold_35182, whole genome shotgun sequence.
ACCAAUAAGGG-AGCGUUGAAGCAUUAUCCUCAUAUGGUCACUUG-GAUAGUGUGGAGCG
AGUAGUGAAACCGGCCUUUAAAAGG
>URS0000AB22D9_546414/1-84 Deinococcus deserti VCD115 Cyclic di-GMP-II riboswitch
AUAACGGCACGAAGCAAUGAAAUGUUCGAUGUAACCGGGCACCUA-UCGAACAUGGAGCU
AGUGGUGCGACCGACGUUUCAUACG
>URS0000D67659_12908/1-83 unclassified sequences c-di-GMP-II-GAG riboswitch
GCCUUCUUCGGAGGCGAUGAAGCCUGUCCCCUAUUCGGGCGCUUG-GGACAGGUGGAGCC
AGUAGCGCGACCGGCCGG--AAGAU
>CP001720.1/3609158-3609242 Desulfotomaculum acetoxidans DSM 771, complete genome.
AUUUAUACGGGAUACUAUGAAGUGAACUCUAUAUUUGGGCAUCUG-GGGUUUACUGAGUA
AGUGAUGCAACCGGCCACUAUUUUA
>CP001962.1/1638632-1638717 Thermus scotoductus SA-01, complete genome.
AGGGCGUUCGGAGGCGAGGAACCGUGUCCCA-AGAUGGGCGCCAAGGGACACGGGGAGCC
AGUGGCGCAACCGGCCGGACGCAUG
>LMSP01000009.1/120598-120515 Paenibacillus sp. Soil787 contig_17, whole genome shotgun sequence.
AAAAAGAAUGUGAGCGAUGAUAUUGAAUCUUUAACUGGGCACUUG-GAUUCAAAGGAGCG
AGUAGUGCAACCGAACAUCCUAAUC
>URS000080E282_1488/1-74 c-di-GMP-II riboswitch from Clostridium acetobutylicum (PDB 3Q3Z, chain V)
-----GCGCGGAAACAAUGAUGAAUGGGUUUAAAUUGGGCACUUG-ACUCAUUUUGAGUU
AGUAGUGCAACCGACCGUGC-----
>URS0000D671CB_12908/1-84 unclassified sequences c-di-GMP-II-AAA riboswitch
UAAGGGUGAGACUGCAAUGAAGCCUGGUUUUUAUAUGGUCACUUG-AACCAGGGGGAGCA
AAUAGUGAAACCAGCCUCACCUUUU
>URS0000D6C153_1288484/1-85 Deinococcus wulumuqiensis R12 c-di-GMP-II-GAG riboswitch
AAGUGGUUUUGAAGCAAAGAAACAUCUGACGCAUUCGGGCGCCUUGUCAGAUGUGGAGCG
AGUGGCGCGACCGGCAAAGCUGUGG
>CP013652.1/4837374-4837457 Paenibacillus naphthalenovorans strain 32O-Y, complete genome.
CAUCUUUGUGGAAGCCAUGAUCAGCCAUUCUCAACUGGGCACUUG-AAUGGCUGGGAGCG
AGUAGUGCAACCGACCCCAUAAUCU
>CP002630.1/142803-142719 Marinithermus hydrothermalis DSM 14884, complete genome.
CGUCCCCUCGGAAGCGAUGAAGCCUGUCCUGCCGUUGGGCGCCUG-GGGCAGGUGGAGCG
GGUGGCGCAACCGGCCGAGGGCGUA
>URS0000D68B7F_1121378/1-85 Deinococcus aquatilis DSM 23025 c-di-GMP-II-GAG riboswitch
UAAGCGAAGAGAUACAAAGAACCCCAUCCUGUAUCCGGGCACCUC-GGAUGGGGGGAGCG
AGUGGUGCGACCGGCUUUUCGAUCA
>MGNK01000145.1/628-546 Chloroflexi bacterium RBG_16_50_9 RBG_16_scaffold_48136, whole genome shotgun sequence.
UAGUAAAUAGG-GGCAAUGAAUCGCCACUUGUAUCUGGGCACUUA-GGUAGCGAGGAGCC
AAUAGUGAAACCGACCAAAUUAAGG
>URS0000D69713_12908/1-85 unclassified sequences c-di-GMP-II-GAG riboswitch
GUAGUGGGUAGAGGCUAAGAACUUCGUCCUGUAUGUGGGCACCGUGGGGCGAAGGAAGCC
AAUGGUGCGACCGUCUACCGUUUAA
>APJS01000099.1/8804-8886 Clostridium tetanomorphum DSM 665 contig99, whole genome shotgun sequence.
AAUGAAAUUGG-AGCAAUGAAGAUUUUCCUAUAUUUGGGCACCUG-GGAAAUUUGGAGUU
AAUGGUGCAACCUCCCAAUAAAAUU
>APJS01000192.1/7260-7342 Clostridium tetanomorphum DSM 665 contig193, whole genome shotgun sequence.
AAUGAAAUUGG-AGCAAUGAAGAUUUUCCUAUAUUUGGGCACCUG-GGAAAUUUGGAGUU
AAUGGUGCAACCUCCCAAUAAAAUU
>CP009687.1/1891257-1891339 Clostridium aceticum strain DSM 1496, complete genome.
UUAAAAAUUAGAACAGAUGAACUACAGUUAU-AUUUGGACGCUUA-AGCUGUAGGGAUGU
AGUGGCGUAACCGGCUAACAAUAGU
>LDXM01000012.1/66958-67040 Chloroflexi bacterium CSP1-4 XU10_C0012, whole genome shotgun sequence.
AAGACGCUCGGACGCGCUGACACCCCACCUG-AAAUGGGCACUUAGGGCGGGGUUGAGCG
ACUAGUGCAACCGACCGA-CGAAUC
>MELK01000045.1/23057-22973 Actinobacteria bacterium RBG_13_55_18 RBG_13_scaffold_550, whole genome shotgun sequence.
GGCCAGCAGGGACGCUGUGAACCGCAGGUUGUACCUGGUCACCUC-ACCUGCGGGGAGCG
AAUGGUGAAACCGGCCCGAUCUACC
>DF967972.1/284980-285082 Longilinea arvoryzae DNA, scaffold: Larv_scaffold_1, strain: KOME-1.
CUUUGUUGGUGAGGCGAUGAACCACCGGUUGAAUUUGGUCGCUUGGACCGGUGGGGAGCC
AGUAGCGAAACCGGCCCGAAUUGGA
>URS0000ABAD1B_12908/1-85 unclassified sequences Cyclic di-GMP-II riboswitch
UCACCCUUCAGAGGCUUAGAUGCCUACCCCGCACUUGGGCGCUUG-GGGUACGCGGAGCC
AGUAGCGCAACCGGCCGAGGGCUUC
>CP013653.1/924821-924738 Paenibacillus sp. 32O-W, complete genome.
AUACAUAUAGGGAGCAGAGAAGCCAGUACUUACUUUGGGCACUUU-GGACUGGUGGAGCU
AGUAGUGCAACCGGCCUUCUUUCAU
>ALPT02000034.1/16810-16727 Bacillus alcalophilus ATCC 27647 = CGMCC 1.3604 strain AV1934 contig00034, whole genome shotgun sequence.
CAUAGAUUUGGAAGCGAGGAAUGGCUAUUUGUAUGUGGGCACUUA-AAUAGCUGGGAGCG
AGUAGUGCAACCGACCGUCAAGUUG
>URS0000AB8C9A_255470/1-85 Dehalococcoides mccartyi CBDB1 Cyclic di-GMP-II riboswitch
AAAUUAAGGGGAAGCGUUGAGCCGCUACCCAUAUGUGGUUCACUCGGAUAGCGGGGAGCU
AAUAGUGAAACCGGCCCUUUAGGGG
>LBQH01000012.1/3942-3859 Candidate division WS6 bacterium GW2011_GWF1_35_23 UR73_C0012, whole genome shotgun sequence.
UUCACUAUCAAAAGCUGUGAUGUAUUCUUUAUAUCUGGUUGCCUU-AAGAAUACGGAGCU
AAUGGCAAACCCGGUUGAUAAUAAA
>URS0000D6C61B_12908/1-83 unclassified sequences c-di-GMP-II-GAG riboswitch
GCCUUCUUCGGAGGCGUUGAAGUCGGUCCCGUAUUCGGGCGCUUG-GGACCGAUGGAGCC
AGUAGCGCGACCGGCCGG--AAGAU
>MGMW01000086.1/11721-11805 Chloroflexi bacterium RBG_13_53_26 RBG_13_scaffold_3666, whole genome shotgun sequence.
AUAACAAAGGGAGACUUUGAACCACUACCUGUAAGUGGUCACUUG-GGGAGUGGGGAGUC
AAUAGUGAAACCGGCCCUUCGGGGU
>URS0000D6CE9C_12908/1-84 unclassified sequences c-di-GMP-II-AAU riboswitch
UUAAAUUAGGGGAGCUGAGAAGUGUGGUCUGUAUCUGGACACUUG-GGCCUCAUGGAGCU
AAUAGUGUAACCUCCCCUCUUAAAA
>CP012024.1/2670253-2670171 Bacillus smithii strain DSM 4216, complete genome.
UCGGAAUUUGG-AGUGAUGAAGAGUCAUUUGUAUCUGGGCACUUG-AAUGACUUGGAGCG
AGUAGUGCAACCUCCCAUUUUCUGU
>MGMW01000087.1/12008-11925 Chloroflexi bacterium RBG_13_53_26 RBG_13_scaffold_3675, whole genome shotgun sequence.
AGGCGCUGAGGGAGCGAUGAACUGCUGCCUGUAAAUGGUCACUUG-GGCAGUGGGGAGCU
AAUAGUGAAACCGACCUGGGAAGGU
>URS0000C89E2E_665952/1-83 Bacillus smithii 7_3_47FAA c-di-GMP-II-AAU riboswitch
UCGGAAUUUGG-AGUGAUGAAGAGUCAUUUGUAUCUGGGCACUUG-AAUGACUUGGAGCG
AGUAGUGCAACCUCCCAUUUUCUGU
>AURB01000151.1/46074-45990 Alicyclobacillus acidoterrestris ATCC 49025 contig_48, whole genome shotgun sequence.
CGGAAGAGUGGACAUGAUGAUCCCUGCUCGUCACGUGGGCACAUAAGAGCUGGGGGAGUG
AGUUGUGCAACCGGCCACCUGUUUA
>CM001441.1/2357988-2358072 Desulfosporosinus youngiae DSM 17734 chromosome, whole genome shotgun sequence.
AUGUACGUGUGAGACAAUGAAUUGCAGUUUAUAAUUGGUCACGAAGAAUUGCAAGGAGUC
AAACGUGAAACCGGCACACUCAUAU
>APJS01000003.1/25208-25124 Clostridium tetanomorphum DSM 665 contig3, whole genome shotgun sequence.
AAAUAUAAGGGGAACUGUGAAAUACAUAUUUGAUUUGGGCAUCUUAGUAUGUAUGGAGUU
AGUGAUGCAACCCACCCU-AUAUUC
>APJS01000038.1/9162-9078 Clostridium tetanomorphum DSM 665 contig38, whole genome shotgun sequence.
AAAUAUAAGGGGAACUGUGAAAUACAUAUUUGAUUUGGGCAUCUUAGUAUGUAUGGAGUU
AGUGAUGCAACCCACCCU-AUAUUC
>CP020772.1/2926276-2926359 Halobacillus mangrovi strain KTB 131, complete genome.
UUUCAGAGAGAAUACGAUGAACUGUAAUUCUUAUCUGGGCACUUG-AAUUAUAGGGAGUA
AUUAGUGCAACCGGCUCCUGCGAGG
>LWDV01000010.1/414617-414533 Orenia sp. Z6 2524618313, whole genome shotgun sequence.
AAUUAUUAAGG-AACUGUGAAGUAUAACCUGUAUUUGGUCACCUAGGGUUAUAUGGAGUU
AAUGGUGAAACCACCCUAUAUUAUU
>AVBG01000009.1/141931-142014 Pontibacillus chungwhensis BH030062 contig10, whole genome shotgun sequence.
GAUACCAUCGGAAGCGACGAAAGGCUGGCUGUAUCUGGGCACUUA-GCCACCCUGGAGCG
AGUAGUGCAACCGACCGUACAUAAA
>LDPH01000006.1/276629-276712 Bacillus circulans strain RIT379 contig6, whole genome shotgun sequence.
UGUAAAGGUAGAAGCUAUGAUUAAUCAACUU-AUUUGGGCGCUUU-GUUGAUUAUGAGCU
ACUAGCGCAACCGGCUAACCAAACA
>URS0000D6B2B1_12908/1-84 unclassified sequences c-di-GMP-II-GAG riboswitch
UAGUGGGGUAGAGGCUAAGAACUUCGUCCUGUACGUGGGCACCUG-GGGCGAAGGAAGCC
AAUGGUGCGACCGUCUACCGUUUAA
>CP000673.1/1160200-1160286 Clostridium kluyveri DSM 555, complete genome.
CAAAUUGAGGGGAACGAUGAGGUACACACUUUAUUUGGGCAUCCUUGUGUGUAUGGAGUU
AGUGAUGCAACCGACCCUGUAUUCA
>URS0000AB87B0_431943/1-87 Clostridium kluyveri DSM 555 Cyclic di-GMP-II riboswitch
CAAAUUGAGGGGAACGAUGAGGUACACACUUUAUUUGGGCAUCCUUGUGUGUAUGGAGUU
AGUGAUGCAACCGACCCUGUAUUCA
>KQ758903.1/1186172-1186090 Dehalogenimonas alkenigignens strain IP3-3 genomic scaffold scaffold00001, whole genome shotgun sequence.
--AUGAUCAGGAAGCGUUGAACCGCCGUCUGUAUUUGGAUACUUG-GACGGCGGGGAGCA
AGUAGUGAAACCGGCUUGUGGAAAU
>URS0000D6B385_12908/1-83 unclassified sequences c-di-GMP-II-GAG riboswitch
GCCUUCUUCGGAGGCGUUGAAGUCGGUCCCGUAAUCGGGCGCUUG-GGACCGAUGGAGCC
AGUAGCGCGACCGGCCGA--AAGAU
>AP012029.1/1764854-1764753 Anaerolinea thermophila UNI-1 DNA, complete genome.
UUAUUUUGUGGAGGCGUUGACUCAGAACGGGAAGUUGGUCGCUUUGUGUUCUGAUGAGCC
AGUAGCGAAACCGACCACAAAAAGG
>LDJB01000001.1/743110-743026 Peptococcaceae bacterium 1109 scaffold00001, whole genome shotgun sequence.
UAGAAUAGUGGACGCAAUGAGGGAUAUCCUUCACUUGGGCACUUG-GGAUAUCCGGAGUG
AGUAGUGCAACCGGCCACGGCGAGA
>CP002394.1/3293603-3293521 Bacillus cellulosilyticus DSM 2522, complete genome.
-UUAUAUUAAGGAGCGAUGAAAAAUGAUCUACAUGUGGGCACUUG-GAUCAUUAGGAGCG
AGUAGUGCAACCGGCUUUAUAUAU-
>CTEI01000002.1/485207-485124 Paraliobacillus sp. PM-2 genome assembly, contig: CONTIG000002
UAUGUAUAUAGGCGCAUUGAAAAUCUAUCUUUAUCUGGGCACUUG-GAUAGAUCGGAGCU
AGUAGUGCAACCGACUGACAAUAGA
>URS0000D69660_12908/1-85 unclassified sequences c-di-GMP-II-AAU riboswitch
UGAAAUAUUGGAGGCGAUGAAGGUGAGACUGUAUUUGGACGCUUG-GUCUUACCGGAGCC
AGUAGCGUAACCUGCCAGUUAGUAA
>MGOF01000052.1/3478-3394 Chloroflexi bacterium RBG_19FT_COMBO_47_15 rbg_19ft_combo_scaffold_56593, whole genome shotgun sequence.
AAUUUAUUGGGGCGCGAUGAAGCACCGGUCGUAUUUGGCCACUUG-ACUGGUGCUGAGCC
AGUAGUGAAACCGACCCUUUAUGGG
>URS0000D6689B_319795/1-83 Deinococcus geothermalis DSM 11300 Cyclic di-GMP-II riboswitch
UUCUUGUUCCGGGGCGAAGAGGCGUGUGGUGUAUCCGGGCACCUG-CCACACGCGGAGCC
AGUGGUGCGACCGACGAACCGUGA-
>BAUV01000012.1/79382-79464 Bacillus akibai JCM 9157 DNA, contig:contig_12.
ACUUGAA-GGAAAGUGAAGAACUACGACUUGUAUAUGGGCACCUG-AGUCGUAAGGAGCU
AUUGGUGCAACCGGCCGCUUUAAGU
>ACJM01000005.1/89134-89216 Dethiobacter alkaliphilus AHT 1 ctg36, whole genome shotgun sequence.
CCCGUUUAUGGGGGCUGUGAUUUCAGGGCUU-AUAUGGACGCUUU-GCCCGGGAGGAGCC
AGUAGCGUAACCGACCAUAUAUUAA
>CP006763.1/1761123-1761039 Clostridium autoethanogenum DSM 10061, complete genome.
CGAUUAGAUGGAAGUGAUGAAGUAUAGCUUGUUUUUGGACACUUA-AGCUAUAUUGAGCU
AGUAGUGUAACCGGCCUCGUAGUAU
>CP017269.1/73047-72966 Geosporobacter ferrireducens strain IRF9, complete genome.
AAAACUUGGGGUAGCUGAGAAGUAUAGUCCGUAUAUGGACACUUG-GGCUAUAUGGAGCU
AGUAGUGUAACCGACCCU--CUUGC
>URS0000AB887B_243230/1-85 Deinococcus radiodurans R1 Cyclic di-GMP-II riboswitch
AAGUGGUUUUGAAGCAGGGAAGCAUCUGACGCAUUCGGGCGCCUUGUCAGAUGUGGAGCG
AGUGGCGCGACCGGCAAAGCUGUGG
>AYSO01000019.1/365962-365878 Clostridium argentinense CDC 2741 U732.Contig251, whole genome shotgun sequence.
AAAUUUAGAAGAAACUGUGAAGUGUGUUCUGUAUAUGGGCAUCUA-GAACAUAUGAAGUU
ACUGAUGCAACCGGCUUCUAAAAAA
>BAVS01000006.1/25658-25578 Gracilibacillus boraciitolerans JCM 21714 DNA, contig:contig_6.
GAAUAAAACAGAUACGAGGAUUAUUUACCUUGAGUUGGGCACUUU-GGUAAAUAGGAGUU
AGUAGUGCAACCGGCUUUCAUC---
>CP008852.1/89118-89201 Pelosinus sp. UFO1, complete genome.
AGGAUGGGAUUAAGCAAUGAAUGUCAGCCUGUAUGUGGACACUUG-GGCUGUCAGGAGCU
GGUAGUGUAACCGGGAUCUCUUUUU
>CP003326.1/810138-810221 [Clostridium] acidurici 9a chromosome, complete genome.
UAUAGAAUUAGAACAGAUGAACUGCAGUUAC-AUUUGGACGCCUUAUACUGUAGGGAUGU
AGUGGCGUAACCGGCUAAUGAUAAA
>URS0000D67263_12908/1-85 unclassified sequences c-di-GMP-II-GAG riboswitch
GCUGACUUCGGAAGCGAUGAAACCUGUCCCGUAUUCGGGCGCUUG-GGACAGGUGGAGCU
AGUAGCGCGACCGGCCGAGAGUUCC
>JMFY01000035.1/41285-41202 Clostridium sp. HMP27 Clostridium-HMP27_contig_35, whole genome shotgun sequence.
UAGGAUAUCGGGAGUGAUGAUAUGCAUUCUUUAUUUGGGCACUUA-GAAUGCAAAGAGCU
AGUAGUGCACCCUACCGACUGAGAA
>CAGS01000291.1/1981-2062 Nitrolancea hollandica Lb, WGS project CAGS01000000 data, contig: 00360-1568
UGAAUAG--GGAGGCAACGACGCGUGGGCGGUAACUGGGCACCUC-GUCCACGCUGAGCU
AGUGGUGCAACCGGCCGUCAAUGCG
>AKZN01000011.1/4298-4381 Alicyclobacillus hesperidum URH17-3-68 URH17368ctg11, whole genome shotgun sequence.
UGUGAGCGUGGACACGAAGAUCCUAAGUCGGUAAGUGGGCACAUA-GACUUAGGGGAGUG
AGUUGUGCAACCGGCCACCCGAUG-
>MGMS01000043.1/10578-10497 Chloroflexi bacterium RBG_13_51_36 RBG_13_scaffold_579, whole genome shotgun sequence.
GAUGGCAUAGGAAGCACUGAACUGUCACCUGUACAUGGUCACUUG-GGUGGCGGGGAGCC
AAUAGUGAAACCGACCUGA-CAAU-
>FUZT01000011.1/136606-136525 Clostridium halophilum strain M1 genome assembly, contig: G325DRAFT_scaffold00011.11
GAUGAAGUUGGAAGCGAAGAGGGGUUCUCGUGAUAUGGGCACUUU-GAGAACAGGGAGCU
AGUGGUGCAACCUGCCAAUAAUU--
>CP006643.1/1070735-1070817 Bacillus infantis NRRL B-14911, complete genome.
AAGAAUAUAGAACACUGUGAUGAGCGGUUUUUAUUU--GCACUUUAAACCGCUUGGAGUG
ACUAGUGCAGCCGGCCAAUGAUCUA
>URS0000AB396C_313627/1-83 Bacillus sp. NRRL B-14911 Cyclic di-GMP-II riboswitch
AAGAAUAUAGAACACUGUGAUGAGCGGUUUUUAUUU--GCACUUUAAACCGCUUGGAGUG
ACUAGUGCAGCCGGCCAAUGAUCUA
>URS0000D6B3F1_12908/1-81 unclassified sequences c-di-GMP-II-GAG riboswitch
AUCGCCAUCGGACGCGAUGACUUGCAGACCUCACCUGGGCACCUUGGUCUGCGACGAGCG
AGUGGUGCGACCGGCUGUGAA----
>URS0000AB93A3_12908/1-84 unclassified sequences Cyclic di-GMP-II riboswitch
UCGCGAUUCGAGGGCGAUGACGCUCGUUCUGCACAUGGGCGCUUG-GAACGAGCCGAGCC
AGUAGCGCAACCGAUCGGUCGACG-
>MGMW01000112.1/33269-33187 Chloroflexi bacterium RBG_13_53_26 RBG_13_scaffold_679, whole genome shotgun sequence.
AGACACAGGGG-AGCGACGAAUCACUGCCCGUAGAUGGUCACUUG-GGCGGUGAGGAGCU
AGUAGUGAAACCGACCCCACUGGGG
>ACVI01000032.1/42023-42106 Clostridium carboxidivorans P7 ctg00129, whole genome shotgun sequence.
AAAAAAAGUGCAAACUGUGAAAAAUUAUCUUUAUUUGGGCACUUG-GAGAAUUUAGAGUU
AGUAGUGCAGCCGGCCAAUAAUUAG
>MELI01000092.1/2925-2842 Actinobacteria bacterium GWC2_53_9 gwc2_scaffold_53814, whole genome shotgun sequence.
CUGUUUCAGGGCGGCGAUGAAGGUAUGCCUGUACUUGGUCACUUG-GGCAUACCGGAGCU
AAUAGUGAACCCGACCCAUAACGAG
>LGFV01000081.1/4476-4559 Actinobacteria bacterium 66_15 MPI_scaffold_2333, whole genome shotgun sequence.
GGGCCGAUCCGAAGCGAUGAACCGCCAUCUGUGAUUGGGCGCCUG-GAUGACGGGGAGCG
AGUGGCGCAACCGGCUGAUCGUGUU
>KQ758491.1/19724-19805 Bacillus enclensis strain SGD-1123 genomic scaffold Scaffold10, whole genome shotgun sequence.
UUCGCAU-UGGGAGCUGUGAACCUGACUGAU-AGAUGGGCGCUUG-CAUUCAGGGGAGCU
AGUGGCGCAACCGACCACAUACGAA
>MJAT01000040.1/93516-93597 Firmicutes bacterium MLFW-2 MLFW-2_Contig_9_85X, whole genome shotgun sequence.
AACUUUUAGGAAUGCUAAGAUAUUUAGUCUGUAUGUGGUCACUUG-GGCUAGAUGGAGCG
AGUAGUGAAACCGAUCCG--CACUU
>CP001116.1/87607-87689 Deinococcus deserti VCD115 plasmid 2, complete sequence.
CUGAUGGGGAG-CGCGAAGAGCCCUGUUCUGUAUUCGGGCACCUG-GGACAGGGGGAGCU
AGUGGUGCGACCGGCUUUUCGUCUG
>CP018258.1/128537-128455 Dehalogenimonas formicexedens strain NSZ-14 chromosome, complete genome.
CUAUACAUGGGACGCGAUGAUCUGCCGCCUGUAUCUGGUCACCUC-GGCGGCGAGGAGCA
AAUGGUGAAACCGGCCCC--GAAAG
>URS0000AB15C3_546414/1-83 Deinococcus deserti VCD115 Cyclic di-GMP-II riboswitch
CUGAUGGGGAG-CGCGAAGAGCCCUGUUCUGUAUUCGGGCACCUG-GGACAGGGGGAGCU
AGUGGUGCGACCGGCUUUUCGUCUG
>URS0000D6B21D_12908/1-83 unclassified sequences c-di-GMP-II-GAG riboswitch
GCCUUCUUCGGAGGCGUUGAAGUCGGUCCCGUAAUCGGGCGCUUG-GGACCGAUGGAGCC
AGUAGCGCGACCGGCCGN--AAGAU
>JRNX01000865.1/703-620 Halobacillus sp. BBL2006 cont891, whole genome shotgun sequence.
UAUCAGAGAGAAUGCGAUGAACUAUGAUUCUUAUUUGGGCACUUG-AAUUAUAGGGAGUA
ACUAGUGCAACCGGCUCCUGCGAGG
>LOES01000083.1/76144-76227 Clostridia bacterium BRH_c25 BRHa_1002446, whole genome shotgun sequence.
UUGGUUGCAGGGGGCUAGGACUUGCGACCUAUACUUGGGCACCUG-GAUCGCAACGAGCU
GGUGGUGCAACCGACCUGACAUUGU
>URS0000D6BAE1_12908/1-82 unclassified sequences c-di-GMP-II-AAA riboswitch
CCAAGGUAAGGAAGCUAUGAACUGUUGCCUGUACUUGGUCACCUG-GGUAGCAGGGAGCC
AAUAGUGAAACCAACCUUUGCGG--
>FQTU01000004.1/1883-1800 Alkalibacter saccharofermentans DSM 14828 genome assembly, contig: EJ14DRAFT_scaffold00004.4
CGUUGUUAUGGAAGCACUGACUCUAAGGGAUUAUUUGGACGCUUUGCCCUUAGGAGAGCU
GGUAGCGUAACCGACCAU-UUAAGG
>LBOV01000019.1/7017-7100 Candidate division WS6 bacterium GW2011_GWC1_33_20 UR34_C0019, whole genome shotgun sequence.
UCAUAUAUCAAAUGCUAUGAUGUACUCUUUCUAUUUGGUUGCCUU-AAGAGUAUGGAGCA
AAUGGCAAAACCGCUUGAUAAUAAU
>FO117623.1/912905-912822 Blastococcus saxobsidens DD2 complete genome
GUCAGACCGUGACGCACUGAUCCGGGGCCUCCAUCUGGUCGCUUG-GGCCCCGGGGAGCG
AGUAGCGAAACCACCGCGGGAACCC
>URS0000C1AEE2_1146883/1-84 Blastococcus saxobsidens DD2 Cyclic di-GMP-II riboswitch
GUCAGACCGUGACGCACUGAUCCGGGGCCUCCAUCUGGUCGCUUG-GGCCCCGGGGAGCG
AGUAGCGAAACCACCGCGGGAACCC
>URS0000D696EE_12908/1-83 unclassified sequences c-di-GMP-II-AAU riboswitch
UUUAUAAAGGGA-GCAAUGAUACAUAUCCUGUAAAUGGGCGCUUG-GGAUAUGUGGAGCC
GGUAGCGCAACCUCCCCUUUGCUUA
>MIJE01000031.1/86916-86831 Desulfuribacillus alkaliarsenatis strain AHT28 DSM-24608_Contig_4_85X, whole genome shotgun sequence.
UACUGUAUUGGAAGCAAAGAAGAGUCAUCUAUAUUUGGGCGCUUUAGAUGAUUAUGAGCG
AGUAGCGCAACCGACCAUACUUAUG
>ADMN01000018.1/10516-10597 Turicibacter sanguinis PC909 contig00047, whole genome shotgun sequence.
UUCUGCCUAAGAAUCGAUGAAAUAUAUUCUGUAUAUGGGUACCUG-GAAUAUAUCGAGAU
AUUGGUACAACCGGCUUU--UUAAA
>MFEI01000002.1/5791-5708 Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_43_23 rifcsphigho2_01_scaffold_11335, whole genome shotgun sequence.
CUUAAACAAUG-GGCUGUGAAGUUUUGUCCGCAUUUGGUCGCUUG-GACAAGAUGGAGCC
AAUAGCGAAACCGACAUUGUGAGAG
>AVBG01000002.1/231004-231085 Pontibacillus chungwhensis BH030062 contig4, whole genome shotgun sequence.
AUACGAU-AGGAAGCUUUGAAACCAAUC-UGUAUUUGGGCGCUUAU-GGUUGGUCGAGCU
AGUAGCGCAACCGGCCGCAUUGAUU
>LSBO01000026.1/15143-15059 Halobacteroidaceae bacterium T328-2 scaffold_195, whole genome shotgun sequence.
UUGAAUCAUGGAAGCGAUGAACUAUAAUCUGCAUUUGGUCACUUU-GAUUAUAGGGAGCA
AGUAGUGAACCCACCCAACUUUCUC
>AVPF01000021.1/11275-11192 Pontibacillus marinus BH030004 = DSM 16465 strain BH030004 contig22, whole genome shotgun sequence.
AUGUCGA-AGGAAGCGUUGAACGGUCGUCUGUAUAUGGGCACUUA-GACGACCAGGAGCG
AUUAGUGCAACCGGCCAAUCAUCAA
>FQVW01000018.1/28324-28241 Ornithinibacillus halophilus strain IBRC-M 10683 genome assembly, contig: Ga0104432_1018
AAACCGAUGGAAAACUAGGAAAUGCGUCCUAUAUAUGGGCACCUG-GGACGUGUGGAGUA
AGUGGUGCAACCGGCCUAAUUAAUG
>MELJ01000225.1/3580-3662 Actinobacteria bacterium RBG_13_35_12 RBG_13_scaffold_58608, whole genome shotgun sequence.
GUUAUAUUUAGGAGCAUUGAAGCUUUUCCUUAUUUUGGACGCUUA-GGGGAAGUGGAGCU
AAUAGCGAAACCGACUAAAAGGU--
>URS0000D6A05A_12908/1-83 unclassified sequences c-di-GMP-II-AAA riboswitch
UAAGGGUGAGGCUGCAAUGAAGCCUGGUUUU-AAAUGGUCACUUG-AACCGGGGAGAGCA
AAUAGUGAAACCAGCCUCACCUUUU
>ACJM01000004.1/62456-62538 Dethiobacter alkaliphilus AHT 1 ctg9, whole genome shotgun sequence.
CAAGUGUGCGGAAUCAAUGACCGCGACUCUC-AUUUGGUCACUUUAGGGUCGCGCGAGAU
AG-AGUGAAACCGGCUGCACACGGG
>MEUP01000158.1/3839-3926 Candidate division WS6 bacterium RIFOXYC1_FULL_33_10 rifoxyc1_full_scaffold_9467, whole genome shotgun sequence.
UACGGUAUCAAAAGCUAUGAUACUCUCUUUAUCUAUGGUCGCCUUUAAGAGAGAGGAGCU
AAUGGCGAAACCGAUUGAUAAUAUA
>LIXZ01000017.1/20145-20225 Bacillus vietnamensis strain UCD-SED5 scaffold_15, whole genome shotgun sequence.
--UUCGACUGGGGGCUUUGAACCUAAAUGAU-AGAUGGGCGCUUA-CAUUUAGGGGAGCC
AGUAGCGCAACCGACCACAUGCGAA
>URS0000D6C472_12908/1-85 unclassified sequences c-di-GMP-II-AAA riboswitch
AGGAACGUUGGGAGCAUUGAACCCACUUCCC-AAAUGGGCGCCAUGGUGGUGGGGGAGCU
AGUGGCGCAACCAGCCAACUUACUU
>MGNB01000100.1/19418-19501 Chloroflexi bacterium RBG_13_57_8 RBG_13_scaffold_8111, whole genome shotgun sequence.
AAGGCUACAGGAAGCUGUGAACCGCUGCCUUUACAUGGUCACUUG-GGUGGCGAGGAGCC
AAUAGUGAAACCGACCUCAAGGGUC
>CAGS01000259.1/12153-12238 Nitrolancea hollandica Lb, WGS project CAGS01000000 data, contig: 00331-1568
GAUAAAAGGGGCAGCGAUGACGCGCGGGCUGUACUUGGGCACCUUAGCCCGCGCUGAGCC
AGUGGUGCAACCGGCCGAUGAGCUU
>MEKJ01000301.1/1283-1180 Acidobacteria bacterium RBG_16_64_8 RBG_16_scaffold_8890, whole genome shotgun sequence.
ACAAUGCGUGGAGGCAAGGAGCCGAGGGCUUAACUUGGUCGCUGA-GCCUUCGGGGAGCC
AGUAGCGAAACCGGCCAC-AAUUGU
>MEOV01000126.1/1893-1972 Bacteroidetes bacterium RBG_13_46_8 RBG_13_scaffold_24013, whole genome shotgun sequence.
AUAUCCUAAAUGGGCAUUGAACUGCCACCUGUAUGUGGUCACCUG-GGUGGCAGGGAGUC
AGUGGUGAAACCGACU----GAAAA
>CP015378.1/3849510-3849428 Fictibacillus phosphorivorans strain G25-29, complete genome.
GAUAAGUGUGG-GGCUGUGAAGGUUAUUCUGUAUGUGGGCGCUUG-GAAUAACUGAAGCU
AGUAGCGCAACCGACCGCUUUCUUU
>LSLJ01000003.1/125284-125365 Sporomusa sphaeroides DSM 2875 SPSPH_contig000003, whole genome shotgun sequence.
--AAAUAAUGAAAGUGAUGAACCUUAGCCUGUAUCUGGACACUUG-GGUUAAGGGGAGCU
GCUAGUGUAACCGGCUUUAUUUUUU
>LOEW01000188.1/3520-3603 Desulfosporosinus sp. BRH_c37 BRHa_1004473, whole genome shotgun sequence.
UAUAAUUUAGGAAAAAUUGAAGCAUGUAUUU-AUUUGGGCGCUUG-GUACAUGUGGA-AU
AGUAGCGCAACCGGCCUGGUUUAUA
>LFZU01000001.1/4032016-4031934 Bacillus sp. FJAT-27231 Scaffold1, whole genome shotgun sequence.
AGAGAAGAUGG-GGCUAUGAACUAUACUUCUAACUUGGGCAUCUG-AAGUAUAGGGAGCG
AGUGAUGCAACCGACCAACACUUGU
>URS0000ABA675_12908/1-83 unclassified sequences Cyclic di-GMP-II riboswitch
AUAAUUUGGUG-GGCGUUGAUGUGCCCUUUGUAUCUGGUCGCUUG-AGGGGUACGGAGCC
AAUAGCGAAACCGCCGCCGUCAUAG
>URS0000D6B950_926561/1-84 Orenia marismortui DSM 5156 c-di-GMP-II-AAU riboswitch
GAAUAUAAGAGAUACUGUGAAGUAUAAUCUAUAUUUGGUCACCUG-GAUUAUAUGGAGUU
AGUGGUGAAACCUCCCUUUAAGGGG
>BAUV01000041.1/17661-17580 Bacillus akibai JCM 9157 DNA, contig:contig_41.
GAGACUUAUGGAUGCGAUGACAACUACCUAU-AUGUGGGCACCUA-UGGUAGUUGGAGCA
GGAGGUGCAACCGGCC-UAAGUUAU
>URS0000D67C26_12908/1-85 unclassified sequences c-di-GMP-II-AAU riboswitch
AAAAAGACAGAAAGCGAUGAAAUAUAGUCGUUAUUUGGUUGCCUA-GACUAUAUGGAGCU
AGUGGCGAAACCUCUCUGACUCAAG
>CP022315.1/2689686-2689770 Virgibacillus sp. LM2416 chromosome, complete genome.
ACUAAAGUAGGAUACGAUGAGAGAUUAUCUGUACAUGGGCACUUG-GAUAAUCCGGAGUA
AGUAGUGCGACCGGCCAACUUGGUU
>LADP01000046.1/205927-205844 Peptococcaceae bacterium BRH_c8a BRHa_1003080, whole genome shotgun sequence.
UAUGAAUUAGGAAGCUAUGAAUCCAGGGUUU-AAUUGGACGCUUAUACCUUGGAGGAGCU
AGUAGCGUAACCGGCCAUGUGGUCG
>LWDV01000007.1/173796-173879 Orenia sp. Z6 2524618310, whole genome shotgun sequence.
CAUAAUAAAAGGAGCAAUGAAAUAUAAUCUGUACCUGGUCACCUA-GAUUAUAUGGAGCU
AAUGGUGAACCCACCCUAUAUUUUU
>CP017269.1/2480265-2480182 Geosporobacter ferrireducens strain IRF9, complete genome.
UCCUAUGAGGGAGACGAAGAGACGUGAUCGACAGUUGGGCACCUA-GGUCAUGAGGAGUC
AGUGGUGCAACCGACCCAAUGAUGA
>AVPE01000002.1/169326-169408 Pontibacillus halophilus JSM 076056 = DSM 19796 strain JSM 076056 contig3, whole genome shotgun sequence.
UAACGAA-CGGAAGCGAUAAAGGACUAUCUGUAUAUGGGCACUUG-GGUAGUCUGGAGCG
AGUAGUGCAACCGACCAGAAUCUGA
>URS0000D6C903_1121378/1-85 Deinococcus aquatilis DSM 23025 c-di-GMP-II-GAG riboswitch
CUGACUGAGUGAGGCGACGACACCUGUUCUGUAUCCGGGCACCUC-GAACAGGUCGAGCC
AGUGGUGCGACCGUCUAUCAGUCCC
>ACJM01000007.1/48473-48391 Dethiobacter alkaliphilus AHT 1 ctg28, whole genome shotgun sequence.
AAUUUUUGUGGGGGCAAUGAUUUUUGGGCUG-AUUUGGACGCUUU-GCCUGGAAUGAGCC
GGUAGCGUAACCGACCACUUGUGGU
>LGUE01000003.1/84326-84408 Bacillus marisflavi strain JCM 11544 scaffold5, whole genome shotgun sequence.
GUCUAUUGGGAAGGCGUUGAACCUGAAUGUCC-GAUGGGCGCUUG-CAUUCAGGGGAGCC
AGUAGCGCAACCGACCGCAUAUGAA
>URS0000D6B25E_12908/1-83 unclassified sequences c-di-GMP-II-AAA riboswitch
GCUACUACUGG-GGCUUUGAACUGCCAUCUGUAACUGGGCACUUG-GAUGGCAGGGAGCC
AAUAGUGAAACCAACCUCUUUAAAU
>AP012029.1/2238146-2238247 Anaerolinea thermophila UNI-1 DNA, complete genome.
UGAAAAAGUGGAGGCGAUGACUCGAGGUCUGUAACUGGUCGCUUGAGACCUCGACGAGCC
AAUGGCGAAACCGUCCACU-UGACA
>URS0000D68E88_12908/1-84 unclassified sequences c-di-GMP-II-GAG riboswitch
AAGCGGCGUGGACGCGAUGAUCACAGCCCUGUAAGCGGUUGCUUG-GGGCUGCGGGAGCA
AGUAGCGAGACCGGCCACGCAUCUC
>MIJE01000001.1/254884-254967 Desulfuribacillus alkaliarsenatis strain AHT28 DSM-24608_Contig_0_85X, whole genome shotgun sequence.
CAAAACAUGGAAUGCUAGGAACUUUAAUCUGUAACUGGUCACUUG-GGUUAAAGGGAGCU
AAUAGUGAAACCGAUCCGCACUUAU
>CP017603.1/3256942-3257024 Clostridium formicaceticum strain ATCC 27076, complete genome.
UAAAAGGAUAGAACAGAAGAACUACAGCUAU-AUUUGGACGCUUA-AGCUGUAGGGAUGU
AGUGGCGUAACCGGCUAACAAUGAU
>LMRV01000041.1/73334-73253 Paenibacillus sp. Soil522 contig_27, whole genome shotgun sequence.
AAGUAAAAGGGAGACGUUGAAAUGCGUUUAGUAUCUGGGCAUCUU-AAACGUAAGGAGUC
AGUGAUGCAACCGUCCCAAAAUG--
>ACJM01000005.1/88429-88511 Dethiobacter alkaliphilus AHT 1 ctg36, whole genome shotgun sequence.
UUAGUUCUUGGGGGCUGUGAUUUCAGGGCUU-AUAUGGACGCUUU-GCCCUGGGGGAGCC
AGUAGCGUAACCGACCACUUAUGGU
>MNXI01000005.1/339-424 Actinobacteria bacterium CG2_30_50_142 cg2_3.0_scaffold_32665_c, whole genome shotgun sequence.
ACUUACCAGGGAUGCGAAGAACUCUAGUUUCAAUUUGGCCGCUUAGAGAUAGAGGGAGCA
AAUAGCGGAACCGACCCAGAAAUGG
>FQZO01000003.1/149367-149449 Clostridium amylolyticum strain DSM 21864 genome assembly, contig: Ga0131114_103
AUUUUUAAUGG-AGUGAUGAAGUAUAUUCUGCAUAUGGUCACUUG-GGAUGUACGGAACU
AAUAGUGAAUCCACCCAUUCGGCAU
>LBVV01000007.1/63707-63622 Candidate division CPR2 bacterium GW2011_GWC2_39_10 UT18_C0007, whole genome shotgun sequence.
UAUUCUAACGAAAGCUAUGACCCGCGACAUAUAUAUGGUCACCUUUGGUCGCAGGUAGCU
AGUGGUGAAACCGGUCGUUUUUUUG
>URS0000D69423_12908/1-84 unclassified sequences c-di-GMP-II-GAG riboswitch
GCCUUCUCCGGCGGCGUUGAUAUCGGUCCCGUAUUCGGGCGCUUG-GGACCGAUGGAGCC
AGUAGCGCGACCGGCCGG--AAGAU
>AVPE01000001.1/158787-158705 Pontibacillus halophilus JSM 076056 = DSM 19796 strain JSM 076056 contig1, whole genome shotgun sequence.
UAUUUUAGUGGGUGCAUCGAAGCCAAUCUAC-AGAUGGGCGCUUA-UGAUUGGUGGAGCA
AGUAGCGCAACCGACCGCAAUGGGG
>FTNC01000033.1/19647-19562 Halanaerobium kushneri strain ATCC 700103 genome assembly, contig: Ga0104713_133
UUUUAGAUUGGAGGCUUUGAUCUAUCAUUUUCAAUUGGUCACCUAAAGUGAUAGUUAGCU
AG-GGUGAAACCGGCCAGUUAAAAG
>MGMU01000054.1/3628-3546 Chloroflexi bacterium RBG_13_52_12 RBG_13_scaffold_30457, whole genome shotgun sequence.
AAUGCUGUGGG-GGCGUUGAGCCGGCGCCUGUAAAUGGUCACUUG-GGUGGCGGCGAGCC
AAUAGUGAAACCGACCCGAAACAAG
>AWTC01000004.1/242053-242138 Sporolactobacillus laevolacticus DSM 442 Contig004, whole genome shotgun sequence.
AGGACAAAAGGACACUAUGAUUCUUGCUCAUUAAUUGGGUGCCUGUGAGCAGGAAGAGUG
AAUGGCACAACCGACCUUUUUACAG
>CP003359.1/2590718-2590802 Halobacteroides halobius DSM 5150, complete genome.
AAUUAUAAAGG-AGCUAUGAAGUAUAAUCUAUAACUGGUCACCUAGGGUUAUAUGGAGCU
AAUGGUGAACCCACCCUGUAUUUUU
>URS0000D6754E_12908/1-85 unclassified sequences c-di-GMP-II-AAU riboswitch
CAAAAAACAGAAAGCAAUGAGAUAUAGUCGUUAUUUGGUUGCCUA-GACUAUAUGGAGCU
AGUGGCGAAACCUCUCUGACUUAAA
>CP002191.1/2143509-2143595 Deinococcus gobiensis I-0, complete genome.
GAAUCACCAGGAGGCAAGGAUCCUCAACUACGAUUCGGGCACCUUGAGUUGAGAGGAGCU
AGUGGUGCGCCCGGCCUGGAGAUCA
>FUWM01000004.1/58702-58616 Selenihalanaerobacter shriftii strain ATCC BAA-73 genome assembly, contig: EI55DRAFT_scaffold00002.2
UUACUCAUUGGAAGCUAAGACUUGUCAUUCCUAACUGGUCAUCAAGAGUGAUAGUGAGCU
AGUGAUGAAACCGGCCAA-GAGUAA
>LGHJ01000012.1/40881-40981 Bellilinea caldifistulae strain GOMI-1 contig_2, whole genome shotgun sequence.
GACGAAU-UGGAGGCGUUGAAGCGUAUGUCAUAUCUGGUCGCUUCGGCAUACGCAGAGCC
AGUAGCGAAACCGGCCACACCAGUA
>MGNS01000056.1/18743-18642 Chloroflexi bacterium RBG_16_57_11 RBG_16_scaffold_17833, whole genome shotgun sequence.
AAUAGUACCAGCGGCAGAGAAGCGAUGACUGUAUAUGGUCGCUUGGGUCAUCGUGGAGCC
AAUAGCGAAACCGGCUGGAAUGGCC
>MGOS01000012.1/2643-2560 Clostridiales bacterium GWB2_37_7 gwb2_scaffold_1261, whole genome shotgun sequence.
GAUAUAU-GGGAAGCUAUGAUAUACAUCUUGAAUCUGGGCACCUU-AGAUGUAUUUAGCC
AAUGGUGCAACCGACCCGAUCUAUA
>URS0000C380DA_745776/1-87 Deinococcus gobiensis I-0 Cyclic di-GMP-II riboswitch
GAAUCACCAGGAGGCAAGGAUCCUCAACUACGAUUCGGGCACCUUGAGUUGAGAGGAGCU
AGUGGUGCGCCCGGCCUGGAGAUCA
>URS0000D6AE7D_12908/1-84 unclassified sequences c-di-GMP-II-ACU riboswitch
AGGAGACCGUGACGUGCUGAUCCGGGGCUUGCAUCUGGUCGCUUG-GGCCCCGGGGAGCG
AGUAGCGAACCCUGCGCGGUGGUCC
>MGNT01000097.1/3136-3052 Chloroflexi bacterium RBG_16_57_8 RBG_16_scaffold_31100, whole genome shotgun sequence.
GAUGGUGUGGGGUGCGUUGAUCCGUCAUCCGCAUUUGGACACUUG-GGUGACGAGGAGCC
AAUAGUGAAACCGACCCACACGGGU
>MGMP01000127.1/11830-11914 Chloroflexi bacterium RBG_13_50_10 RBG_13_scaffold_5074, whole genome shotgun sequence.
AAGAUUAGUGGGGGCAAUGAAGCGGCGUCCGUAGGAGGUCACUGG-GAUGCUGUGGAGCC
AGUAGUGAAACCGACCACUUGGGUG
>URS0000ABB6BE_293826/1-83 Alkaliphilus metalliredigens QYMF Cyclic di-GMP-II riboswitch
AAAAAUG-UAGAGCAAAUGAACUGCAGGUAU-ACAUGGACGCCUUAAACUGCAGGGAUGU
AGUGGCGUAACCGACUAACAAUAUU
>MEYG01000156.1/2985-3068 Candidatus Atribacteria bacterium RBG_16_35_8 RBG_16_scaffold_61109, whole genome shotgun sequence.
AAGAAAUUUAGUAGCUUAGAAACUUUCCUCAAAUUUGGACGCUAG-AGGGAAGAGGAGCU
AAUAGCGAAACCGACUAAAUAGUCG
>MGMW01000050.1/13180-13263 Chloroflexi bacterium RBG_13_53_26 RBG_13_scaffold_19475, whole genome shotgun sequence.
GACAUAAUUGGGAACGUUGAACCACCGCCUGUAAGUGGUCACUUG-GGCAGUGGGGAGUG
AAUAGUGAAACCGACCUUCGCUGGU
>CP002192.1/112420-112338 Deinococcus gobiensis I-0 plasmid P1, complete sequence.
UAGACGAAGAGAAGCGAAGAACCUGU-CCUGUAAUCGGGCACCUC-GG-ACAGGGGAGCC
AGUGGUGCGACCGGCUUUUCAUCCA
>MGNS01000132.1/12562-12666 Chloroflexi bacterium RBG_16_57_11 RBG_16_scaffold_5140, whole genome shotgun sequence.
GGUUUUUUCGGAGGCUUAGAUCCAAAGACUUUGAUUGGUCGCUG--GUCUUUGGGGAGCC
AAUAGCGAAACCGGCCUUGACAACC
>URS0000C69881_745776/1-83 Deinococcus gobiensis I-0 Cyclic di-GMP-II riboswitch
UAGACGAAGAGAAGCGAAGAACCUGU-CCUGUAAUCGGGCACCUC-GG-ACAGGGGAGCC
AGUGGUGCGACCGGCUUUUCAUCCA
>URS0000D66C66_12908/1-83 unclassified sequences c-di-GMP-II-GAG riboswitch
AGCUUCUCUGGAGGCGAUGAAGCCUGAUCCCUGCUCGGGCGCUUG-GGACAGGUGGAGCC
AGGAGCGCGACCGGCCGG--AAGCU
>LADP01000046.1/246515-246599 Peptococcaceae bacterium BRH_c8a BRHa_1003080, whole genome shotgun sequence.
GUAUUGAGCGAAAACUAUGAUACGCGGCUUUAUGAUGGGCGCCUAAUACCGCGGGGAGUU
AGUGGCGCAACCGGUCGCUGCAUUU
>KQ758903.1/1725199-1725114 Dehalogenimonas alkenigignens strain IP3-3 genomic scaffold scaffold00001, whole genome shotgun sequence.
GAAUAUCCAGGAGGCUGUGACCCGGGCCCCCCAUUUGGUCACUUG-GGGCCCGGCGAGCC
AACAGUGAAACCGGCUUGGGAGAGG
>LOEE01000007.1/1325-1241 Thermotalea metallivorans strain B2-1 AN619_contig000014, whole genome shotgun sequence.
AUAUUCUCGGGAAACGAAGAAAUACACAUCCUGCUUGGGCACCUG-AUGUGUAUGGAGUG
AGUGGUGCAACCGGCCCGGUAUUCA
>URS0000D6AAD4_12908/1-88 unclassified sequences c-di-GMP-II-GAG riboswitch
AAAUCGGCUUGGGGCUGUGAUUCACCUUCUUUAUCCGGGCGUCUCGGAGGGUGAGGAGCC
AGUGACGCGACCGACAAGCAAGUCG
>JNVC02000014.1/15978-15895 Bacillus cibi strain DSM 16189 Contig14, whole genome shotgun sequence.
UAAUGAAUGGAAUGCAGAGAUUGAUCGUUUAUAAUUGGGCGCUUU-AACGAUCGGGAGCA
AGUAGCGCAACCGGCCAGCACAGAC
>DF967972.1/1322182-1322284 Longilinea arvoryzae DNA, scaffold: Larv_scaffold_1, strain: KOME-1.
AGUUCAUGUGGAGGCGUUGAUUCGAGACCUGAAUAUGGUCGCUUAAGGUCUCGAUGAGCC
AAUAGCGAAACCGCCCACUCGAUGA
>LYVF01000047.1/225147-225229 Desulfotomaculum sp. LMa1 LMA27_trimmed_contig_18, whole genome shotgun sequence.
UUUCCAAGCGGAGGCAAUGACCUGCGGUCCGUAUGUGGGCGCCUG-GACUGUAGAAAGCC
GCUGGUGCAACCGGCCGC-UGCACU
>URS0000D6BB9A_12908/1-81 unclassified sequences c-di-GMP-II-AAU riboswitch
UAUGAUACGAG-AGCUUUGAGAUAUAACUUAUAUUUGGUCACCUG-AGUUAUAUGGAGCU
AGUGGUGAAAC---CUCCUUCAAUA
>CP003382.1/305973-306055 Deinococcus peraridilitoris DSM 19664, complete genome.
AUGUCAUCCGG-GGCUGUGAAUCACGCGGUGCAACCGGGCACCUG-CCGCGUGAGGAGCC
AGUGGUGCGACCGAUCGGACGGGCA
>URS0000AB74AB_709986/1-82 Deinococcus maricopensis DSM 21211 Cyclic di-GMP-II riboswitch
CUUCACAGACGAGGCAAGGAAACGCGCAGUGCAUCCGGGCACCUG-CUGCGCGUCGAGCC
AGUGGUGCGACCGACGUCCCCCG--
>URS0000C63C74_937777/1-83 Deinococcus peraridilitoris DSM 19664 Cyclic di-GMP-II riboswitch
AUGUCAUCCGG-GGCUGUGAAUCACGCGGUGCAACCGGGCACCUG-CCGCGUGAGGAGCC
AGUGGUGCGACCGAUCGGACGGGCA
>FQZL01000010.1/105552-105635 Dethiosulfatibacter aminovorans DSM 17477 genome assembly, contig: EJ55DRAFT_scaffold00007.7
GCUUGAAUCGGGAACGUUGAACCAGACGGAGUAUUUGGACACUUU-CCCUCUGGUGAGUU
AAUAGUGUAACCGACCUUUUAUUAA
>MGOM01000110.1/5503-5403 Chloroflexi bacterium RBG_19FT_COMBO_62_14 rbg_19ft_combo_scaffold_5421, whole genome shotgun sequence.
AGUCCAUGUGGAGGCGAUGAACCAGGGCGUUUUGCUGGUCGCUCAAAGCCCUGGGGAGCC
AGUAGCGAAACCGGCCACAGGCU--
>URS0000D6CB63_12908/1-86 unclassified sequences c-di-GMP-II-AAA riboswitch
CUGUAA-UUGGAGGCGUUGAACCUACCUUUCCAUAUGGGCGCCAUGUUGGUAGGGGAGCU
AGUGGCGCAACCAGCCAACUUACUA
>FWXI01000022.1/87805-87721 Sporomusa malonica strain DSM 5090 genome assembly, contig: Ga0070592_122
UUUAUAAAGGGAAGCAACGAAGCCUGGGCUGUAUUUGGGCACUUG-GUCCAGGCUGAGCA
AGUAGUGCAACCGACCGCAAAAUAU
>URS0000D6AA3C_12908/1-81 unclassified sequences c-di-GMP-II-GAG riboswitch
AUAGAAGCAGGAAGCUUUGACCUGCCGCCUUUAUAUGGGCACUUG-GGCGGCAGCGAGCG
AAUAGUGAGACCGACCUCAAA----
>URS0000D6BDA1_12908/1-85 unclassified sequences c-di-GMP-II-GAG riboswitch
CGAGAGAUACGGGGCGACGACCCGCAGCCUCAAUCCGGGCACUUC-GACUGCGGCGAGCC
AGUAGUGCGACCGACGUACCCAACC
>JMQF01000057.1/24369-24286 Deinococcus sp. RL contig057, whole genome shotgun sequence.
GGGGCGUUUCG-AGCGUAGAGCCACGCGGUGUGUUCGGGCACCUG-CUGCGUGGGGAGCG
AGUGGUGCGACCGGCGAAACGGACC
>URS0000D6A203_12908/1-86 unclassified sequences c-di-GMP-II-GAG riboswitch
AAGGCGUUCGGAGGCGUCGAACCGAGAUCCCGAUUCGGGCAUCAAGGGACUCGGGGAGCC
AGUGAUGCGACCGACCGAAUGAGCU
>MIJE01000001.1/246053-246136 Desulfuribacillus alkaliarsenatis strain AHT28 DSM-24608_Contig_0_85X, whole genome shotgun sequence.
AUAAAUAUGGG-AGUUAUGACAUCUAACCUCUUUAUGGUCACUUG-GGUUAGAAGGAGCU
AGUAGUGAAACCGACCCACAUGAUU
>CAGS01000364.1/294-375 Nitrolancea hollandica Lb, WGS project CAGS01000000 data, contig: 00426-1568
---AAUAACGGCGGCGAUGACGCGGCGAUGGUAACUGGGCACCUC-AUCGACGCUGAGCC
AGUGGUGCAACCGGCCGAUGAAGUU
>FQZB01000007.1/106414-106332 Clostridium cavendishii DSM 21758 genome assembly, contig: EJ30DRAFT_scaffold00005.5
UGAAAUUUUGGAAGUUAUGAUGCUUGUUCUUUAUUUGGUCACUUU-AGACAAGCGGAGCU
AAUAGUGAACCCACCCAA--UUACU
>CM001240.1/5233024-5232941 Clostridium sp. DL-VIII chromosome, whole genome shotgun sequence.
ACACGGAUUGGGAACUGUGAGGGAUUCUCUCUAUUUGGGCAUCUG-GAGGAUUCUUAGUU
AAUGAUGCAACCCGCCAAUCAAAAC
>CP003235.1/472429-472511 Paenibacillus mucilaginosus 3016, complete genome.
AUACGACAUGGGAGCUAUGACUUUGAAUCCGUAUCUGGGCACUUG-GAUUCAA-CGAGCC
AGUAGUGCAACCGACCAUCUUCCUU
>MGMQ01000064.1/16960-17058 Chloroflexi bacterium RBG_13_50_21 RBG_13_scaffold_2125, whole genome shotgun sequence.
UUUAUAGAUGGAUGCGAUGAGCCGGAGAUCUUA-UUGGGCGCCUAGAUCUCUGGGGAGCU
AAUAGCGAAACCGGCCAUAAAUCCG
>MGOJ01000139.1/8369-8467 Chloroflexi bacterium RBG_19FT_COMBO_50_10 rbg_19ft_combo_scaffold_5468, whole genome shotgun sequence.
UUUAUAGAUGGAUGCGAUGAGCCGGAGAUCUUA-UUGGGCGCCUAGAUCUCUGGGGAGCU
AAUAGCGAAACCGGCCAUAAAUCCG
>FTNC01000004.1/116602-116689 Halanaerobium kushneri strain ATCC 700103 genome assembly, contig: Ga0104713_104
AACAAUAAAGGAAGCUAUGACCAUCUGUUUUUAUAUGGACACCUUUAACAGAUGCGAGCC
AAUGGUGUAACCGACCCUUAGGGGC
>LBBT01000137.1/47112-47029 Clostridium sp. JC272 contig145, whole genome shotgun sequence.
AAUGAAUUGAGAAGCGAAGAACUAUAUCCUAUAUGUGGGCAUCUU-GGAUAUAUGGAGUU
AUUGAUGCAACCAGCUACACUUAAA
>URS0000D69D53_12908/1-84 unclassified sequences c-di-GMP-II-AAU riboswitch
GAAUAAACAGAAAGUGAUAAAGUAUAGUUAUUAAGUGGUCGCCUA-AACUAUAUGGAGCU
AGUGGCGAAACCUCUCUAAUUAAUU
>GL635751.1/566829-566746 Bacillus sp. 2_A_57_CT2 genomic scaffold supercont1.2, whole genome shotgun sequence.
GGACAAGUUGGAAGCAAUGAGAAUUCAAGGAAAAAUGGGCGCUUU-AAUGAAUUCGAGCU
AGUAGCGCAACCGGCCAGCACUUAC
>URS0000D6A6C1_12908/1-85 unclassified sequences c-di-GMP-II-AAA riboswitch
AUGUAA-UUGGAGGCAUUGAACCUGCCAGCCUAAAUGGGCGCCAUGUCGGCAGGUGAGCU
AGUGGCGCAACCAGCCAACUUACUU
>FP565809.1/218088-218170 Clostridium sticklandii str. DSM 519 chromosome, complete genome.
ACAUAAU-AAGAGCAGAUGAACUAUAGCUAG-AUAUGGACGCCUUACGCUAUAGGGAUGC
AGUGGCGUAACCGGCUGAAUUAUAA
>CP006914.1/877963-878047 Candidate division WWE3 bacterium RAAC2_WWE3_1 chromosome, complete genome.
UUAGUUCGAGAAUGCAAGGAAACACGUUGCGUAAUUGGUCGCUUG-UAACGUGCGGAGCA
AGUAGCGAAACCGGUCUCUAUGUUG
>FRAJ01000003.1/271195-271113 Caminicella sporogenes DSM 14501 genome assembly, contig: EJ28DRAFT_scaffold00001.1
UAGUAGUUGAGAGCAGAUGAUAUAUGGGCAA-AUUUGGACGCCUUAUCCCAUAUUGAUGC
AGUGGCGUAACCGACU-AACUAUGA
>AP008955.1/5612470-5612389 Brevibacillus brevis NBRC 100599 DNA, complete genome.
AGGUAGGAAAGAAGCGAAGAAGUACGGACUGUAUCUGGUCGCUUG-GUCCGUAUGGAGCC
AGUAGCGAAUCCAGCUUUUCCG---
>URS0000D6C678_12908/1-86 unclassified sequences c-di-GMP-II-GAG riboswitch
AAGGCGUUCGGAGGCGUCGAGCCGAGAUCCCGAUUCGGGCAUCAAGGGACUCGGGGAGCC
AGUGAUGCGACCGACCGAAUGAGCU
>LJCR01000659.1/586-670 Kouleothrix aurantiaca strain COM-B contig_659, whole genome shotgun sequence.
CUGACCAGCGGGUGCGUUGAUCUUGGUGAUGAGUUUGGACGCCCAGUCACCAAGGGAGCA
AGUGGCGUAACCGACC-CUGGCAGG
>MNJV01000055.1/5385-5300 Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7 13_1_20cm_2_scaffold_14587, whole genome shotgun sequence.
GGCGAACGUUGAAGCGAUGAUCUGACAGCCUCACCUGGUCACCAGGGCUGUCGGCGAGCG
AAUGGUGAAACCGGCAACGUGAGCG
>URS0000D6B3E6_12908/1-84 unclassified sequences c-di-GMP-II-AAU riboswitch
AUCAGACCGUGACGUGCUGAUCCGCAGCCUGCAUGUGGUCGCUUG-GGCUGCGGGGAGCG
AGUAGCGAAACCUGCGCGGAUGUC-
>CP003235.1/5887749-5887832 Paenibacillus mucilaginosus 3016, complete genome.
AAAAGUUUUGGGAGCUAUGACUUCGCAUCCGCACGUGGGCACUUG-GAUGCGAACGAGCU
GGUAGUGCAACCGACCAU--CUUCU
>LXGJ01000183.1/31868-31786 Bacillus sp. WF146 contig183, whole genome shotgun sequence.
---UAGGUAGGAAGCGAUGAAGUACAGACUGUAUCUGGUCGCUUG-GUCUGUAUGGAGCC
AGUAGCGAAUCCGCCCUCUUUUCGA
>LJUS01000013.1/43781-43867 Anaerolineae bacterium SM23_ 63 WORSMTZ_363, whole genome shotgun sequence.
UUAUCUUCUGGAAGCUAUGACCCGAAGGGCCUCAGUGGUCACUUGGUCCUUCGACGAGCG
AAUAGUGAAACCGGCCAGAUGGAUG
>LGKO01000003.1/44255-44151 Thermanaerothrix daxensis strain GNS-1 contig_5, whole genome shotgun sequence.
UCUUCAAUUGGCGGCGAUGACGCGCAGGCUGUUUUUGGUCGCUUAGGCCUGCGCCGAGCC
AAUAGCGAAACCGGCCAGUUGUUAC
>MZGX01000001.1/254833-254916 [Clostridium] hungatei strain DSM 14427 CLHUN_contig000001, whole genome shotgun sequence.
CUGCAAAAUUGAGGGGUUGACACAUGGCUUAUAUUCGGGCACUUG-AGUUAUGUUGAGCC
AGUGGUACGACCGGCUUUUUUGUCG
>URS0000D668F2_12908/1-87 unclassified sequences c-di-GMP-II-AAA riboswitch
UUCCCAAGGGGAGGCGGUGAACCCUCGACCCAAGAUGGGCGCCAUGGCCGAGGGGGAGCC
AGUGGCGCAACCAGCCCCUAAAGCC
>URS0000D6A901_12908/1-86 unclassified sequences c-di-GMP-II-AAU riboswitch
CGAAGCAGUAGAGGCUUGGAAGUUCGCCCCAAAGAUGGGCGCUUAGGGACGGACAGAGUC
AGUGGCGCAACCUGCUACUUCAUAA
>URS0000D69A03_926561/1-84 Orenia marismortui DSM 5156 c-di-GMP-II-ACU riboswitch
UCUUCUUCAGGAAGCAAUGAUGUAUAGACUGUAAUUGGUCACCUAUGUCUAUAUUGAGCU
AAUGGUGAACCCUCCCUUGUAUU--
>LYVF01000081.1/5163-5244 Desulfotomaculum sp. LMa1 LMA27_trimmed_contig_23, whole genome shotgun sequence.
CAAUAAUGCGGAGUCGAUGCAACGCGGCCCAUACUUGGGCGCCUG-GACCGUGUGAAGAC
AGUGGCGCAACCGACCGC--UGCCG
>URS0000D6C045_12908/1-86 unclassified sequences c-di-GMP-II-AAA riboswitch
-GUGUAAUUGGAGGCGUUGAACCUACCUUUCCAUAUGGGCGCCAUGUUGGUAGGGGAGCU
AGUGGCGCAACCAGCCAACUUACUG
>LJJB01000010.1/1287821-1287738 Brevibacillus choshinensis strain DSM 8552 scaffold2, whole genome shotgun sequence.
AGGUAAGAAAGUCGCAAAGAAGUACGGACUGUAUUUGGUCGCUUG-GUCCGUAUGGAGCC
AGUAGCGAAUCCGCCCUUUUCCACU
>LJTX01000085.1/203-120 Dehalococcoidia bacterium SG8_51_3 WOR_8-12_12753, whole genome shotgun sequence.
GCGUAUUAGGGGUGCAACGAACCAUCACUUGUAAAUGGUCACUUA-AGUUAUGGCAAGCU
AAUAGUGAAACCGACCCAAAAGGUC
>LOEE01000021.1/12124-12206 Thermotalea metallivorans strain B2-1 AN619_contig000028, whole genome shotgun sequence.
AUAUUUGUUAGGGCAGGAGAAGCAUGACU-AUAUGUGGACGCUUA-CGUCAUGUGGAUGC
AGUGGCGUAACCGACUAACUAUGGC
>URS0000D69543_12908/1-84 unclassified sequences c-di-GMP-II-AAA riboswitch
AGUAAAGGGUGACGCAUUGAUCCACGGGCCCAGUUUGGUCGCCCG-GCCCGUGGGGAGCG
AAUGGCGAAACCACCGCCCGCAUCA
>URS0000D69BC0_12908/1-86 unclassified sequences c-di-GMP-II-AAU riboswitch
AAAUGGCAAUGAGGCGAAGAAACAUAGUCCCCAUAUGGACGCCAUGGAGUAUGUGGAGCG
GGUGGCGUAACCUGCAUUGCAAUUU
>MJAT01000022.1/184547-184630 Firmicutes bacterium MLFW-2 MLFW-2_Contig_2_85X, whole genome shotgun sequence.
AAAGCAUAAGGGAGCUAAGAUAAACAAUUCUAACAUGGACGCCUG-AAUUGUUUGGAGCA
AGUGGCGUAACCGACCAGUUAUUUC
>MGNE01000199.1/9365-9264 Chloroflexi bacterium RBG_13_66_10 RBG_13_scaffold_5526, whole genome shotgun sequence.
GACGACUGUGGAGGCGCUGAUCCGGGGGGAGUAACUGGUCGCUGGGCACCCCGGGGAGCC
AAUAGCGAAACCGGCCAC--AUGGC
>URS0000D67B27_12908/1-86 unclassified sequences c-di-GMP-II-AAA riboswitch
AAUGUAAUUGGAGGCAUUGAACCUGUCAGCCUAAAUGGGCGCCAUGUCGGCGGGUGAGCU
AGUGGCGCAACCAGCCAACUUACUU
>URS0000D6A16C_12908/1-92 unclassified sequences c-di-GMP-II-GAG riboswitch
UGGUGGGGCAGAGGCCGUGAACCACGCCCCCAAGAUGGGCGCUUAGGGACGUGGGGAGCC
AGUAGCGCGACCGGCUACUGGACCU
>LDYG01000003.1/80187-80103 Bacillus coahuilensis p1.1.43 ABFP000003, whole genome shotgun sequence.
UUGCAAUGAGGAAGCUACGACCCUAAAUUAGUACUUGGGCGCUUU-GAUUUAGGAUAGCU
AAUAGCGCAACCGGCCACAUUGAGA
>URS0000ABA6A5_290402/1-84 Clostridium beijerinckii NCIMB 8052 Cyclic di-GMP-II riboswitch
AUAGUAAUUGAGAGCUAUGAAGAAUUCUUUUUAUGUGGAUAUUUU-AAGAAUUUCGAGCU
AUCUGUGCAGUCGACCAAUUUAAAC
>MGMW01000055.1/3693-3775 Chloroflexi bacterium RBG_13_53_26 RBG_13_scaffold_21988, whole genome shotgun sequence.
CAGUCUUGGGGAAGCGAUGAACCACCGCCCGUGGAUGGUCACUGG-GGC-GUGGGGAGCU
AGCAGUGAAACCGACCCAGAAGUGG
>MGNK01000051.1/18029-17946 Chloroflexi bacterium RBG_16_50_9 RBG_16_scaffold_1843, whole genome shotgun sequence.
UCGAGGUAAGGGAACGAUGAACCGUUACCUGUAAAUGGUCACUUG-GGUGGCGGCGAGUA
ACCAGUGAAACCGGCCCUGAAAGGU
>URS0000D68F7F_12908/1-83 unclassified sequences c-di-GMP-II-AAA riboswitch
AAAAAAAUUGGAAGCGAUGGAUCCCUGGUUUUAAUU-GACGCUUG-ACCAGGGAGGAGCU
AGUAGCGUAACCAGCCAGAUGGUCG
>BAAW01001404.1/567-484 Human gut metagenome DNA, contig sequence: F1-U_001404.
AAUAAAUCUGGAAGUAAUGAUAAAUUCUCUUUAUUUGGGCACUUU-GAGGAUUUUGAACU
AGUAGUGCAACCCGCCAACAAUUAA
>AAWL01000006.1/67971-67888 Thermosinus carboxydivorans Nor1 ctg50, whole genome shotgun sequence.
ACUGCAA-UGGGUGUGAUGAAGUCCGGACAGUAUGUGGGCACUUA-GUCCGGACCGAGCA
AGUAGUGCAACCGACCAGAUGCAAA
>AP009049.1/1160074-1160160 Clostridium kluyveri NBRC 12016 DNA, complete genome.
CAAAUUGAGGGGAACGAUGAGGUACACACUUUAUUUGGGCAUCCUUGUGUGUAUGGAGUU
AGUGAUGCAACCGACCCUGUAUUCA
>AM180355.1/3826693-3826610 Clostridium difficile 630 complete genome
-AAUAUUUUAGAAACUGAGAAGUAUAUCUUAUUAUUGGGCAUCUGGAGAUAUAUGGAGUU
AGUGGUGCAACCGGCUAUGAAUAUA
>BA000004.3/387918-388001 Bacillus halodurans C-125 DNA, complete genome.
AAUCAAUAGGGAAGCAACGAAGCAUAGCCUUUAUAUGGACACUUG-GGUUAUGUGGAGCU
ACUAGUGUAACCGGCCCUCCUUUAA
>AE015927.1/474745-474827 Clostridium tetani E88, complete genome.
AUUUUAAGAGGAAAUUUUGAACUAUAUACUU-AUUUGGGCACUUU-GUAUAUAGGGAGUU
AGUAGUGCAACCGACCUUGAUUAAU
>BA000016.3/197260-197343 Clostridium perfringens str. 13 DNA, complete genome.
AAAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUGCUGAGUU
AGUGAUGCAACCGACUAUAUUUAUA
>AE000513.1/1919839-1919755 Deinococcus radiodurans R1 chromosome 1, complete sequence.
CUGUCGAAGAGACGCGAUGAAUCCCGCCCUGUAUUCGGGCACCUC-GGACGGGAGGAGCA
AGUGGUGCGACCGGCUUUUCGUUGG
>CP000724.1/3560727-3560645 Alkaliphilus metalliredigens QYMF, complete genome.
AAAAAUG-UAGAGCAAAUGAACUGCAGGUAU-ACAUGGACGCCUUAAACUGCAGGGAUGU
AGUGGCGUAACCGACUAACAAUAUU
>ACOM01000005.1/2090470-2090387 Clostridium butyricum E4 str. BoNT E BL5262 CLP.Contig65, whole genome shotgun sequence.
CAUGUAGUUGGAAACGAAGAAUAGUUCUCUCAAUCUGGGCACCUU-GGGAACUAGGAGUU
AGUGGUGCAACCCGCCAGCAAAUUA
>CP000246.1/171340-171423 Clostridium perfringens ATCC 13124, complete genome.
AAAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUGCUGAGUU
AGUGAUGCAACCGACUAUAUUUAUA
>AM180355.1/3306767-3306682 Clostridium difficile 630 complete genome
AAAUAUUAUAGAGAUGUUGAAGUAUAUUCUAUUAUUGGGCACCUUUGGAUAUACUGAGUC
AGUGGUGCAACCGGCUAUGAAUAUA
>CP000721.1/1272636-1272718 Clostridium beijerinckii NCIMB 8052, complete genome.
UGUAUAUAAGGAAACUGUGAUUCGAAUAUUU-ACUUGGGCACUUU-AUAUUCGAUGAGUU
AAUAGUGCAACCGACCUUUUUAUUA
>CP000721.1/2550212-2550295 Clostridium beijerinckii NCIMB 8052, complete genome.
AUUACAAUUGGAAGCUAUGAAGAAUUCUUUCUAAGUGGGCACUUU-AAGAGUUUGGAGCU
AGUUGUGCAACCGACCAAUUAAGAU
>AACY020292692.1/343-428 Marine metagenome 1096626368917, whole genome shotgun sequence.
GAGGCGUCCGGAGGCGAUGACCCGCGAUCCCCAUUUGGGCAUCAAGGGACGCGGCGAGCC
AGUGAUGCAACCGGCCGGACGGCUA
>AE001437.1/648479-648561 Clostridium acetobutylicum ATCC 824, complete genome.
UAUUUGUUUGGAAACAAUGAUGAAUUUCUUUAAAUUGGGCACUUG-AGAAAUUUUGAGUU
AGUAGUGCAACCGACCAA-CGAUUA
>AJ965256.1/1260708-1260792 Dehalococcoides sp. CBDB1 complete genome
AAAUUAAGGGGAAGCGUUGAGCCGCUACCCAUAUGUGGUUCACUCGGAUAGCGGGGAGCU
AAUAGUGAAACCGGCCCUUUAGGGG
>AAFX01078109.1/475-391 Environmental sequence XZS39253.g1, whole genome shotgun sequence.
UCACCCUUCAGAGGCUUAGAUGCCUACCCCGCACUUGGGCGCUUG-GGGUACGCGGAGCC
AGUAGCGCAACCGGCCGAGGGCUUC
>CP000359.1/298588-298670 Deinococcus geothermalis DSM 11300, complete genome.
UUCUUGUUCCGGGGCGAAGAGGCGUGUGGUGUAUCCGGGCACCUG-CCACACGCGGAGCC
AGUGGUGCGACCGACGAACCGUGA-
>AE001437.1/3752962-3752879 Clostridium acetobutylicum ATCC 824, complete genome.
UUAAGCGUUGGAGACUGUGAAGAAUUUCUUGUAUUUGGGCACCUU-AGAAAUUUGGAGUU
AGUGGUGCAACCUGCCAACAAUAAU
>CP000721.1/2207052-2207135 Clostridium beijerinckii NCIMB 8052, complete genome.
ACAAAGAUUGGGAACUAUGAAGAAUUCUCUGUAUUUGGGCAUCUU-GAGAAUUUAGAGUU
AAUGAUGCAACCCACCAAUCAAAAC
>AE000513.1/692045-692129 Deinococcus radiodurans R1 chromosome 1, complete sequence.
AAGUGGUUUUGAAGCAGGGAAGCAUCUGACGCAUUCGGGCGCCUUGUCAGAUGUGGAGCG
AGUGGCGCGACCGGCAAAGCUGUGG
>ABDX01000006.1/72290-72207 Clostridium perfringens CPE str. F4969 gcontig_1106202596980, whole genome shotgun sequence.
AAAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUGCUGAGUU
AGUGAUGCAACCGACUAUAUUUAUA
>AACY020292692.1/175-258 Marine metagenome 1096626368917, whole genome shotgun sequence.
UCGCGAUUCGAGGGCGAUGACGCUCGUUCUGCACAUGGGCGCUUG-GAACGAGCCGAGCC
AGUAGCGCAACCGAUCGGUCGACG-
>AACY023761929.1/1009-1091 Marine metagenome ctg_1101668569280, whole genome shotgun sequence.
AUAAUUUGGUG-GGCGUUGAUGUGCCCUUUGUAUCUGGUCGCUUG-AGGGGUACGGAGCC
AAUAGCGAAACCGCCGCCGUCAUAG
>CP000312.1/175590-175673 Clostridium perfringens SM101, complete genome.
AUAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUGCUGAGUU
AGUGAUGCAACCGACUAUAUUUAUA
>AP009389.1/2908378-2908465 Pelotomaculum thermopropionicum SI DNA, complete genome.
GAGAUAGUGUGAAGCAGUGAUCUUGCAGCUA-AUAUGGUCACUUUGGCUGCAAGUGAGCU
AAUAGUGAAACCGGCACACUGAUGC
>CP000923.1/1535517-1535600 Thermoanaerobacter sp. X514, complete genome.
AUUUUAUAAAGAGUAGAUGAAGUGAGGCUAU-AUGUGGGCACUUUAUGCCUCACGGAUAC
AGUGGUGCAACCGGCUUUAUGUCGG
>ABFD02000011.1/154500-154415 Clostridium difficile QCD-66c26 contig00011_2, whole genome shotgun sequence.
AAAUAUUAUAGAGAUGUUGAAGUAUAUUCUAUUAUUGGGCACCUUUGGAUAUACUGAGUC
AGUGGUGCAACCGGCUAUGAAUAUA
>AAOX01000007.1/31274-31356 Bacillus sp. NRRL B-14911 1099999053126, whole genome shotgun sequence.
AAGAAUAUAGAACACUGUGAUGAGCGGUUUUUAUUU--GCACUUUAAACCGCUUGGAGUG
ACUAGUGCAGCCGGCCAAUGAUCUA
>AM180355.1/3801149-3801064 Clostridium difficile 630 complete genome
CCUAUUUAUAGAAACUGUGAAGUAUAUCUUAAACCUGGGCACUUAAAGAUAUAUGGAGUU
AGUAGUGCAACCUGCUAUAAAUAUA
>CP001098.1/2206138-2206055 Halothermothrix orenii H 168, complete genome.
UAUUGAAUGGGAAGCUAUGAACUCUUCUUUGUACGUGGUCACUUG-AAGGAGAGGGAGCU
AGUAGUGAAACCGCCCCGACCGGGG
>CP000382.1/1875256-1875172 Clostridium novyi NT, complete genome.
UUUUUAAAAGGAGACUUUGAACUAUAUACUUUAUUUGGGCACUUU-GUAUAUAGGGAGUC
AUUAGUGCAACCGACCUUAUUUUAU
>ABHE02000039.1/57574-57489 Clostridium difficile QCD-76w55 contig00039_2, whole genome shotgun sequence.
UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAUGUGGGCACCUUAGAGCAUAUUGAGUU
AGUGGUGCAACCGGCUAUGAAAUUG
>ABHD02000026.1/148456-148371 Clostridium difficile QCD-63q42 contig00026_2, whole genome shotgun sequence.
AAAUAUUAUAGAGAUGUUGAAGUAUAUUCUAUUAUUGGGCACCUUUGGAUAUACUGAGUC
AGUGGUGCAACCGGCUAUGAAUAUA
>AM180355.1/4105882-4105797 Clostridium difficile 630 complete genome
UAAUAAAAUAGAAACGUUGAUUUAUGUUCUGUAUGUGGGCACCUUGGAGCAUAUUGAGUU
AGUGGUGCAACCGGCUAUGAAAUUG
>AAFX01024083.1/557-455 Environmental sequence XZS94218.g1, whole genome shotgun sequence.
CACCACUGUGGACGCUUUGAUCCGGUGUCUUGAUUUGGUCGCUUAGGGCGCCGGGGAGCG
AGUAGCGAAACCGGCCAC--UGGUA
>ABDU01000054.2/14999-15082 Clostridium perfringens C str. JGS1495 gcontig_1106166512733, whole genome shotgun sequence.
AAAUGUUAUAGAAACGUUGAUGUAUAUUCUGUAUUUGGGCAUCUG-GAAUAUGCUGAGUU
AGUGAUGCAACCGACUAUAUUUAUA
>CP000721.1/3552610-3552527 Clostridium beijerinckii NCIMB 8052, complete genome.
AGAACAAUUGGAAGCGAUGAAAAAUUCUCUAUAUCUGGGCACUUU-GAGAAUUUGGAGCU
AGUUGUGCAACCGACCAAUUAAAAC
>ABHG02000025.1/45887-45804 Clostridium difficile QCD-37x79 contig00025_2, whole genome shotgun sequence.
-AAUAUUUUAGAAACUGAGAAGUAUAUCUUAUUAUUGGGCAUCUGGAGAUAUAUGGAGUU
AGUGGUGCAACCGGCUAUGAAUAUA
>AAFX01082705.1/413-329 Environmental sequence XZS76186.x1, whole genome shotgun sequence.
AUCGAUUUCGGAUGCCUUGAUCCGACCGCUGAAUGUGGGCACUUAGGCGGCCGGGGAGCA
GGUAGUGCAACCGACCGUUCCGCAC
>CP000721.1/4868650-4868568 Clostridium beijerinckii NCIMB 8052, complete genome.
-UGUCAUAAGGAAACUUUGAUCCAUAUAUUUUAAUUGGGCACUUU-AUAUAUGGUGAGUU
AGUAGUGCAACCGACCUUUAUAUUU
>CP000721.1/4369760-4369677 Clostridium beijerinckii NCIMB 8052, complete genome.
AUAGUAAUUGAGAGCUAUGAAGAAUUCUUUUUAUGUGGAUAUUUU-AAGAAUUUCGAGCU
AUCUGUGCAGUCGACCAAUUUAAAC
>CP001078.1/3290558-3290475 Clostridium botulinum E3 str. Alaska E43, complete genome.
UAUAAAGUUGGAGAUUAUGAAUAGUUCUCUUUAUUUGGGCACCUU-GAGAACUAGGAAUC
AGUGGUGCACCCGGCCAACAAAUUA
>CP001116.1/102374-102291 Deinococcus deserti VCD115 plasmid 2, complete sequence.
AUAACGGCACGAAGCAAUGAAAUGUUCGAUGUAACCGGGCACCUA-UCGAACAUGGAGCU
AGUGGUGCGACCGACGUUUCAUACG
>ABSO01005747.1/296-213 Freshwater sediment metagenome lwFormate_BCIX3308_g1, whole genome shotgun sequence.
GUCAAUAUCGGACGCGCGGAUGCCUCGCCUG-AAAUGGGCACUUAGGGUGAGGCGGAGCG
AGUAGUGCAACCGACCGACCCCAGU
>ABVK02000002.1/96520-96604 Thermus aquaticus Y51MC23 ctg62, whole genome shotgun sequence.
AGGCACCUCGGAGGCGACGAAGCCUGUCCUGCAUCUGGGCGCCUG-GGACAGGUGGAGCC
AGUGGCGCAACCGGCCGAGGGCGGG
>CP001276.1/419946-420032 Thermomicrobium roseum DSM 5159 plasmid, complete sequence.
CGACACCCCGGAGGCGAAGAAGCGCUGCCUGACGUUGGGCGCCAGGGGCAGCGUGGAGCC
AGUGGCGCACCCGGCCGGGAUAUCC
>CP002042.1/3024809-3024724 Meiothermus silvanus DSM 9946, complete genome.
GGGGGGUUCGGAGGCGACGAACUGUGUCCCCAAUAUGGGCACCAAGGGGCACAGGGAGCU
AGUGGUGCAACCGGCCGAACACCGC
>CP001791.1/1643284-1643367 Bacillus selenitireducens MLS10, complete genome.
ACGACAAUUGGAUGCUGAGAAGAAAUGGUACUAUCUGGGCACUUA-ACCAUUUUGGAGCU
GCUAGUGCAACCGGCCGG-AGACAU
>CP001720.1/3973350-3973434 Desulfotomaculum acetoxidans DSM 771, complete genome.
GAGUUUCUUGGGAACUAUGACAUCAACUCUUUAUCUGGGCAUCUUAGAGUUGAUUGAGUU
AGUGAUGCAACCGACCUUGAAGAAA
>CP001743.1/2770688-2770773 Meiothermus ruber DSM 1279, complete genome.
ACCAAGUUCGGAGGUGAUGAUCCGUUUCCCA-AUCUGGGCACCAAGGGAAACGGGGAGCC
AGUGGUGCAACCGGCCGAACCCAAA
>CP001824.1/1154935-1155018 Sphaerobacter thermophilus DSM 20745 chromosome 2, complete sequence.
GUGAGCG-CGGAGGCGAUGACGCGCGGGCUGUAUUUGGGCACCUC-GCCCGCGCCGAGCC
UGGGGUGCAACCGGCCGGCUAAGAC
>CP001825.1/388010-388096 Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete sequence.
AAUUAGCGUAGAGGCGACGAAGUCCGCUUACCAUAUGGGCACCAUGGAGCGGAUGGAGCC
ACUGGUGCAACCGGCUACUGAGAAG
