.gitignore
CHANGELOG.rst
LICENSE
MANIFEST.in
README.md
environment.yml
example.py
pyproject.toml
requirements.txt
setup.py
docs/notes.md
docs/pathing.md
docs/plotting.md
docs/readme_figure.ipynb
docs/tutorial.md
docs/manuscript/example_tree.svg
docs/manuscript/tskit_arg_visualizer_manuscript.ai
docs/manuscript/tskit_arg_visualizer_manuscript.ipynb
docs/manuscript/tskit_arg_visualizer_manuscript.png
docs/manuscript/tskit_arg_visualizer_manuscript.svg
docs/manuscript/duffy/README.md
docs/manuscript/duffy/arg2trees.py
docs/manuscript/duffy/duffy_100.ai
docs/manuscript/duffy/duffy_100.png
docs/manuscript/duffy/duffy_100_bw.ai
docs/manuscript/duffy/duffy_100_ts.svg
docs/manuscript/duffy/out.1000.arg
docs/manuscript/duffy/out.1000.sites
docs/manuscript/duffy/out.1000.trees
docs/manuscript/duffy/view.py
images/arg_visualizer.png
images/bifurcation_middle.png
images/bifurcation_node.png
images/recombination_node.png
images/stylized_arg_visualizer.png
images/tskit_arg_visualizer.png
images/presentation/svg_tree.svg
tskit_arg_visualizer/__init__.py
tskit_arg_visualizer/_version.py
tskit_arg_visualizer/visualizer.css
tskit_arg_visualizer/visualizer.js
tskit_arg_visualizer.egg-info/PKG-INFO
tskit_arg_visualizer.egg-info/SOURCES.txt
tskit_arg_visualizer.egg-info/dependency_links.txt
tskit_arg_visualizer.egg-info/requires.txt
tskit_arg_visualizer.egg-info/top_level.txt
tskit_arg_visualizer/alternative_plots/edge_spans.js
tskit_arg_visualizer/alternative_plots/genome_bar.js