biopython>=1.85
matplotlib>=3.9.0
numpy>=2.2.3
pandas>=2.2.3
pomegranate>=1.0.0
pyparsing<3.3.0,>=3.1.2
pyfaidx>=0.8.1.3
pysam>=0.23.0
reportlab>=4.3.1
scikit-learn>=1.5.0
scipy>=1.14.1

[test]
pytest
pytest-cov
coverage[all]
ruff
safety
bandit[toml]
