Metadata-Version: 2.1
Name: napari-wsireg
Version: 0.1.1
Summary: plugin to perform whole slide image registration with wsireg
Home-page: https://github.com/nhpatterson/napari-wsireg
Author: Nathan Heath Patterson
Author-email: heath.patterson@vanderbilt.edu
License: BSD-3-Clause
Project-URL: Bug Tracker, https://github.com/nhpatterson/napari-wsireg/issues
Project-URL: Documentation, https://github.com/nhpatterson/napari-wsireg#README.md
Project-URL: Source Code, https://github.com/nhpatterson/napari-wsireg
Project-URL: User Support, https://github.com/nhpatterson/napari-wsireg/issues
Classifier: Development Status :: 4 - Beta
Classifier: Framework :: napari
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Software Development :: Testing
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: wsireg (>=0.3.6)
Requires-Dist: SimpleITK
Requires-Dist: czifile
Requires-Dist: dask
Requires-Dist: imagecodecs
Requires-Dist: napari
Requires-Dist: numpy
Requires-Dist: ome-types
Requires-Dist: pint
Requires-Dist: qtpy
Requires-Dist: tifffile
Requires-Dist: zarr (>=2.10.3)
Requires-Dist: napari-geojson
Requires-Dist: networkx
Requires-Dist: matplotlib

# napari-wsireg

![Alt text](https://github.com/NHPatterson/napari-wsireg/blob/main/src/napari_wsireg/gui/resources/wsireg-logo-light.svg?raw=true "wsireg")

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[//]: # ([![PyPI]&#40;https://img.shields.io/pypi/v/napari-wsireg.svg?color=green&#41;]&#40;https://pypi.org/project/napari-wsireg&#41;)

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[//]: # ([![tests]&#40;https://github.com/nhpatterson/napari-wsireg/workflows/tests/badge.svg&#41;]&#40;https://github.com/nhpatterson/napari-wsireg/actions&#41;)

[//]: # ([![napari hub]&#40;https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-wsireg&#41;]&#40;https://napari-hub.org/plugins/napari-wsireg&#41;)


Plugin to perform whole slide image registration based on wsireg.

Please see [wsireg](https://github.com/nhpatterson/wsireg) for more info image formats, features and how registration works.


## Usage

Add images from napari layers or from file and set up "registration paths" between them. OME-TIFF is best supported format.

### Constructed registration graph in action

![Alt Text](assets/graph_in_action.gif)


_Solid arrows_: direct registration between two images.

_Dashed arrows_: indriect registration paths.

## Installation

You can install `napari-wsireg` via [pip]:

    pip install napari-wsireg



To install latest development version :

    pip install git+https://github.com/nhpatterson/napari-wsireg.git


## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,
"napari-wsireg" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/nhpatterson/napari-wsireg/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/
