Metadata-Version: 1.2
Name: merge_fastq
Version: 0.1.4
Summary: Package to merge multiple pair of pair-end fastq data
Home-page: https://github.com/rhshah/merge_fastq
Author: Ronak Shah
Author-email: rons.shah@gmail.com
License: Apache Software License 2.0
Description: ===========
        merge_fastq
        ===========
        
        
        .. image:: https://img.shields.io/pypi/v/merge_fastq.svg
                :target: https://pypi.python.org/pypi/merge_fastq
        
        .. image:: https://img.shields.io/travis/msk-access/merge_fastq.svg
                :target: https://travis-ci.com/msk-access/merge_fastq
        
        .. image:: https://readthedocs.org/projects/merge-fastq/badge/?version=latest
                :target: https://merge-fastq.readthedocs.io/en/latest/?badge=latest
                :alt: Documentation Status
        
        
        .. image:: https://pyup.io/repos/github/msk-access/merge_fastq/shield.svg
             :target: https://pyup.io/repos/github/msk-access/merge_fastq/
             :alt: Updates
        
        
        
        Package to merge multiple pair of pair-end fastq data
        
        
        * Free software: Apache Software License 2.0
        * Documentation: https://merge-fastq.readthedocs.io.
        
        
        Features
        --------
        
        * Given multiple pair-end fastq data merge them into single pair-end fastq w.r.t each READ1 and READ2 
        
        Usage
        -----
        
        > merge_fastq --help
        
        Usage: merge_fastq [OPTIONS]
        
          Console script for merge_fastq.
        
        Options:
          -fp1, --fastq1 PATH      Full path to gziped READ1 fastq files, can be
                                   specified multiple times for example: --fastq1
                                   test_part1_R1.fastq.gz --fastq1
                                   test_part2_R1.fastq.gz  [required]
          -fp2, --fastq2 PATH      Full path to gziped READ2 fastq files, can be
                                   specified multiple times for example: --fastq2
                                   test_part1_R2.fastq.gz --fastq2
                                   test_part2_R2.fastq.gz  [required]
          -op, --output-path PATH  Full path to write the output files (default:
                                   Current working directory)
          -of1, --out-fastq1 TEXT  Name of the merged output READ1 fastq file
                                   (default: merged_fastq_R1.fastq.gz)
          -of2, --out-fastq2 TEXT  Name of the merged output READ2 fastq file
                                   (default: merged_fastq_R2.fastq.gz)
          --help                   Show this message and exit.
        
        Credits
        -------
        
        This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.
        
        .. _Cookiecutter: https://github.com/audreyr/cookiecutter
        .. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage
        
        
        =======
        History
        =======
        
        0.1.0 (2019-10-21)
        ------------------
        
        * First release on PyPI.
        
Keywords: merge_fastq
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.7
Requires-Python: >=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*
