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src/samtools-1.9/lz4/LICENSE
src/samtools-1.9/lz4/lz4.c
src/samtools-1.9/lz4/lz4.h
src/samtools-1.9/m4/ax_with_curses.m4
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src/samtools-1.9/misc/wgsim_eval.pl
src/samtools-1.9/misc/zoom2sam.pl
src/samtools-1.9/test/test.c
src/samtools-1.9/test/test.h
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src/samtools-1.9/test/vcf-miniview.c
src/samtools-1.9/test/addrprg/1_fixup.sam
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src/samtools-1.9/test/bedcov/bedcov.bam
src/samtools-1.9/test/bedcov/bedcov.bam.bai
src/samtools-1.9/test/bedcov/bedcov.bed
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src/samtools-1.9/test/collate/fast_collate.sam
src/samtools-1.9/test/dat/bam2fq.001.sam
src/samtools-1.9/test/dat/bam2fq.002.sam
src/samtools-1.9/test/dat/bam2fq.003.sam
src/samtools-1.9/test/dat/bam2fq.004.sam
src/samtools-1.9/test/dat/bam2fq.005.sam
src/samtools-1.9/test/dat/bam2fq.010.sam
src/samtools-1.9/test/dat/bam2fq.703.sam
src/samtools-1.9/test/dat/cat.hdr
src/samtools-1.9/test/dat/depad.001.fa
src/samtools-1.9/test/dat/depad.001.fa.fai
src/samtools-1.9/test/dat/depad.001p.sam
src/samtools-1.9/test/dat/depad.001u.sam
src/samtools-1.9/test/dat/dict.fa
src/samtools-1.9/test/dat/dict.out
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src/samtools-1.9/test/dat/large_chrom.out
src/samtools-1.9/test/dat/large_chrom.sam
src/samtools-1.9/test/dat/large_chrom_bai_index.err
src/samtools-1.9/test/dat/mpileup.1.sam
src/samtools-1.9/test/dat/mpileup.2.sam
src/samtools-1.9/test/dat/mpileup.3.sam
src/samtools-1.9/test/dat/mpileup.err.1
src/samtools-1.9/test/dat/mpileup.out.1
src/samtools-1.9/test/dat/mpileup.out.2
src/samtools-1.9/test/dat/mpileup.out.3
src/samtools-1.9/test/dat/mpileup.out.4
src/samtools-1.9/test/dat/mpileup.ref.fa
src/samtools-1.9/test/dat/mpileup.ref.fa.fai
src/samtools-1.9/test/dat/test_input_1_a.bam
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src/samtools-1.9/test/dat/test_input_1_a.cram
src/samtools-1.9/test/dat/test_input_1_a.sam
src/samtools-1.9/test/dat/test_input_1_a_regex.sam
src/samtools-1.9/test/dat/test_input_1_b.bam
src/samtools-1.9/test/dat/test_input_1_b.sam
src/samtools-1.9/test/dat/test_input_1_b_regex.sam
src/samtools-1.9/test/dat/test_input_1_c.bam
src/samtools-1.9/test/dat/test_input_1_c.sam
src/samtools-1.9/test/dat/test_input_1_d.sam
src/samtools-1.9/test/dat/view.001.01.bed
src/samtools-1.9/test/dat/view.001.02.bed
src/samtools-1.9/test/dat/view.001.fa
src/samtools-1.9/test/dat/view.001.fa.fai
src/samtools-1.9/test/dat/view.001.sam
src/samtools-1.9/test/dat/view.002.01.bed
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src/samtools-1.9/test/dat/view.002.fa
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src/samtools-1.9/test/dat/view.002.sam
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src/samtools-1.9/test/dat/cram_md5/08c04d512d4797d9ba2a156c1daba468
src/samtools-1.9/test/dat/cram_md5/7c35feac7036c1cdef3bee0cc4b21437
src/samtools-1.9/test/dat/cram_md5/89b96de7acc5918c2858ef92710be7d4
src/samtools-1.9/test/dat/cram_md5/8a3d8deb9edd4ce3346b6061fcee6d0b
src/samtools-1.9/test/fixmate/1_coord_sort.sam
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src/samtools-1.9/test/fixmate/2_isize_overflow.sam
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src/samtools-1.9/test/fixmate/3_reverse_read_pp_lt.sam
src/samtools-1.9/test/fixmate/3_reverse_read_pp_lt.sam.expected
src/samtools-1.9/test/fixmate/4_reverse_read_pp_equal.sam
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src/samtools-1.9/test/fixmate/5_ct.sam
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src/samtools-1.9/test/fixmate/6_ct_replace.sam
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src/samtools-1.9/test/fixmate/7_two_read_mapped.sam
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src/samtools-1.9/test/markdup/2_bad_order.sam
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src/samtools-1.9/test/markdup/3_missing_mc.sam
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src/samtools-1.9/test/markdup/4_missing_ms.sam
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src/samtools-1.9/test/markdup/5_markdup.sam
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src/samtools-1.9/test/markdup/6_remove_dups.sam
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src/samtools-1.9/test/markdup/7_mark_supp_dup.sam
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src/samtools-1.9/test/merge/tag.pg.n.merge.expected.sam
src/samtools-1.9/test/merge/test_3.fofn
src/samtools-1.9/test/merge/test_bam_translate.c
src/samtools-1.9/test/merge/test_header.sam
src/samtools-1.9/test/merge/test_rtrans_build.c
src/samtools-1.9/test/merge/test_trans_tbl_init.c
src/samtools-1.9/test/mpileup/1read.bam
src/samtools-1.9/test/mpileup/1read.sam
src/samtools-1.9/test/mpileup/anomalous.sam
src/samtools-1.9/test/mpileup/c1#ID.bam
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src/samtools-1.9/test/mpileup/c1#clip.bam
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src/samtools-1.9/test/mpileup/md5/6ec590eb82c361a61e6baabce20109bc
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src/samtools-1.9/test/reheader/2_view1.sam.expected
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src/samtools-1.9/test/reheader/3_view1.sam.expected
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src/samtools-1.9/test/split/test_parse_args.c
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src/samtools-1.9/test/stat/10_map_cigar.sam_s1_b_1.expected.bamstat
src/samtools-1.9/test/stat/11.stats.expected
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src/samtools-1.9/test/stat/2_equal_cigar_full_seq.sam
src/samtools-1.9/test/stat/3.stats.expected
src/samtools-1.9/test/stat/3_map_cigar_equal_seq.sam
src/samtools-1.9/test/stat/4.stats.expected
src/samtools-1.9/test/stat/4_X_cigar_full_seq.sam
src/samtools-1.9/test/stat/5.stats.expected
src/samtools-1.9/test/stat/5_insert_cigar.sam
src/samtools-1.9/test/stat/6.stats.expected
src/samtools-1.9/test/stat/7.stats.expected
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src/samtools-1.9/test/stat/8_secondary.sam
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src/samtools-1.9/test/stat/test.fa
src/samtools-1.9/test/stat/test.fa.fai
src/samtools-1.9/test/tview/test_get_rg_sample.c
src/samtools-1.9/win32/libcurses.a
src/samtools-1.9/win32/libz.a
src/samtools-1.9/win32/xcurses.h
src/samtools-1.9/win32/zconf.h
src/samtools-1.9/win32/zlib.h