.gitignore
LICENSE
README.md
pyproject.toml
requirements-r.txt
vmwhere_sky_logo.png
.github/workflows/ci.yml
.github/workflows/release.yml
examples/run_vmwhere_find.sh
examples/run_vmwhere_genotype.sh
examples/run_vmwhere_visualize.sh
examples/data/.gitattributes
examples/data/A673_sampled_reads.sorted.bam
examples/data/A673_sampled_reads.sorted.bam.bai
examples/data/GCF_009914755.1_T2T-CHM13v2.0_chr6_chr10.fasta
examples/data/T2T_regions.bed
examples/output/chr6_example_region_visualization.pdf
examples/output/example_sample_vmwhere_results.tsv
examples/output/microsatellite_coordinates.bed
src/vmwhere/__init__.py
src/vmwhere/_version.py
src/vmwhere/chr_mapping_simple.txt
src/vmwhere/cli.py
src/vmwhere/find.py
src/vmwhere/genotyper.py
src/vmwhere/visualize_region.R
src/vmwhere.egg-info/PKG-INFO
src/vmwhere.egg-info/SOURCES.txt
src/vmwhere.egg-info/dependency_links.txt
src/vmwhere.egg-info/entry_points.txt
src/vmwhere.egg-info/requires.txt
src/vmwhere.egg-info/top_level.txt
tests/A673_sampled_reads.sorted.bam
tests/A673_sampled_reads.sorted.bam.bai
tests/T2T_regions.bed
tests/__init__.py
tests/conftest.py
tests/test_cluster_reads.py
tests/test_decompose_reads.py
tests/test_find.py