
Importing papers from BibTeX
----------------------------

Found paper: (Langtangen_2003a) - Computational Partial Differential Equations - Numeric...
Found paper: (Langtangen_2008a) - Python Scripting for Computational Science
Found paper: (Langtangen_2012) - A Primer on Scientific Programming with Python
Found paper: (Langtangen_1992c) - Stochastic breakthrough time analysis of an enhanced o...
Found paper: (Langtangen_1994a) - Numerical solution of first passage problems in random...

Validating papers
-----------------

Validating paper: (Langtangen_2003a) - Computational Partial Differential Equations - Numeric...
  Status is not defined, assuming status is "published".
Validating paper: (Langtangen_2008a) - Python Scripting for Computational Science
  Status is not defined, assuming status is "published".
Validating paper: (Langtangen_2012) - A Primer on Scientific Programming with Python
  Status is not defined, assuming status is "published".
Validating paper: (Langtangen_1992c) - Stochastic breakthrough time analysis of an enhanced o...
  Status is not defined, assuming status is "published".

  Unknown journal: "SIAM Journal of Scientific and Statistical Computing"
  Suggested journal: "SIAM Journal on Scientific Computing"
  Unknown journal, what should I do?
  [1] Replace journal.
  [2] Add journal.
  [3] Skip paper.
Please enter 1, 2 or 3 (or press return to choose [1]): 
Validating paper: (Langtangen_1994a) - Numerical solution of first passage problems in random...
  Status is not defined, assuming status is "published".

  Unknown journal: "SIAM Journal of Scientific and Statistical Computing"
  Suggested journal: "SIAM Journal on Scientific Computing"
  Unknown journal, what should I do?
  [1] Replace journal.
  [2] Add journal.
  [3] Skip paper.
Please enter 1, 2 or 3 (or press return to choose [1]): 

Validated 5 paper(s) ok.
Found 0 invalid paper(s).


Imported 5 paper(s) from "refs1.bib".

Merging papers
--------------

Need to merge 0 + 5 = 5 papers.


Summary of papers
-----------------

Articles in International Journals: 2
Books:                              3
Edited Books:                       0
Chapters in Books:                  0
Refereed Proceedings:               0
Conference Proceedings:             0
Technical Reports:                  0
Manuals:                            0
Theses:                             0
Courses:                            0
Talks:                              0
Posters:                            0
Public Outreach:                    0
Preprints:                          0
Other Publications:                 0
Total:                              5

Saving database to file "papers.pub"

Validating papers
-----------------

Validating paper: (Langtangen_1992c) - Stochastic Breakthrough Time Analysis of an Enhanced O...
Validating paper: (Langtangen_1994a) - Numerical Solution of First Passage Problems in Random...
Validating paper: (Langtangen_2003a) - Computational Partial Differential Equations - Numeric...
Validating paper: (Langtangen_2008a) - {P}ython Scripting for Computational Science
Validating paper: (Langtangen_2012) - A Primer on Scientific Programming With {P}ython

Validated 5 paper(s) ok.
Found 0 invalid paper(s).


Importing papers from BibTeX
----------------------------

Found paper: (Mortensen_et_al_2011) - A {FEniCS}-Based Programming Framework for Modelin...
Found paper: (Mardal_et_al_2003a) - Software Tools for Multigrid Methods
Found paper: (Jeberg_et_al_2004) - Optimization with {Diffpack}: Practical Example from ...
Found paper: (Langtangen_1988d) - The {FEMDEQS} Program System
Found paper: (Langtangen_1989e) - Computational Methods for Two-Phase Flow in Oil Reserv...
Found paper: (Langtangen_talk_2007a) - Computational Modeling of Huge Tsunamis from Aste...

Validating papers
-----------------

Validating paper: (Mortensen_et_al_2011) - A {FEniCS}-Based Programming Framework for Modelin...
  Status is not defined, assuming status is "published".
Validating paper: (Mardal_et_al_2003a) - Software Tools for Multigrid Methods
  Status is not defined, assuming status is "published".
Validating paper: (Jeberg_et_al_2004) - Optimization with {Diffpack}: Practical Example from ...
  Status is not defined, assuming status is "published".
Validating paper: (Langtangen_1988d) - The {FEMDEQS} Program System
  Status is not defined, assuming status is "published".

  Unknown institution: "Department of Mathematics, University of Oslo"
  Suggested institution: "InterMedia, University of Oslo"
  Unknown institution, what should I do?
  [1] Replace institution.
  [2] Add institution.
  [3] Skip paper.
Please enter 1, 2 or 3 (or press return to choose [1]): 
Validating paper: (Langtangen_1989e) - Computational Methods for Two-Phase Flow in Oil Reserv...
  Status is not defined, assuming status is "published".

  Unknown school: "Mechanics Division, Department of Mathematics, University of Oslo"
  Suggested school: "Department of Informatics, University of Oslo"
  Unknown school, what should I do?
  [1] Replace school.
  [2] Add school.
  [3] Skip paper.
Please enter 1, 2 or 3 (or press return to choose [1]): 
Validating paper: (Langtangen_talk_2007a) - Computational Modeling of Huge Tsunamis from Aste...
  Status is not defined, assuming status is "published".

Validated 6 paper(s) ok.
Found 0 invalid paper(s).


Imported 6 paper(s) from "refs2.bib".

Merging papers
--------------

Need to merge 5 + 6 = 11 papers.


Summary of papers
-----------------

Articles in International Journals: 3
Books:                              3
Edited Books:                       0
Chapters in Books:                  0
Refereed Proceedings:               0
Conference Proceedings:             1
Technical Reports:                  2
Manuals:                            0
Theses:                             1
Courses:                            0
Talks:                              0
Posters:                            0
Public Outreach:                    0
Preprints:                          0
Other Publications:                 1
Total:                              11

Saving backup copy of database to file "papers.pub.bak"
Saving database to file "papers.pub"

Validating papers
-----------------

Validating paper: (Langtangen_1992c) - Stochastic Breakthrough Time Analysis of an Enhanced O...
Validating paper: (Langtangen_1994a) - Numerical Solution of First Passage Problems in Random...
Validating paper: (Mortensen_et_al_2011) - A {FEniCS}-Based Programming Framework for Modelin...
Validating paper: (Langtangen_2003a) - Computational Partial Differential Equations - Numeric...
Validating paper: (Langtangen_2008a) - {P}ython Scripting for Computational Science
Validating paper: (Langtangen_2012) - A Primer on Scientific Programming With {P}ython
Validating paper: (Mardal_et_al_2003a) - Software Tools for Multigrid Methods
Validating paper: (Jeberg_et_al_2004) - Optimization With {Diffpack}: Practical Example From ...
Validating paper: (Langtangen_1988d) - The {FEMDEQS} Program System
Validating paper: (Langtangen_1989e) - Computational Methods for Two-Phase Flow in Oil Reserv...
Validating paper: (Langtangen_talk_2007a) - Computational Modeling of Huge Tsunamis From Aste...

Validated 11 paper(s) ok.
Found 0 invalid paper(s).


Importing papers from BibTeX
----------------------------

Found paper: (Langtangen_Pedersen_2002) - Propagation of Large Destructive Waves
Found paper: (Langtangen_et_al_2002) - Numerical Methods for Incompressible Viscous Flow
Found paper: (Glimsdal_et_al_20006) - Propagation of the {Dec.~26}, 2004 {Indian Ocean T...
Found paper: (Rahman_et_al_2006b) - Numerical Investigation of a Piezoelectric Surface A...
Found paper: (Haga_et_al_2011a) - On the causes of pressure oscillations in low-permeabl...
Found paper: (Langtangen:95) - Finite elements for the {Boussinesq} wave equations
Found paper: (Langtangen:85) - Solution of the {Navier-Stokes} equations with the finite...
Found paper: (Langtangen:91) - Numerical Methods in Continuum Mechanics
Found paper: (Langtangen:94b) - {Diffpack}: Software for partial differential equations
Found paper: (testdoc:12) - A Document for Testing Doconce

Validating papers
-----------------

Validating paper: (Langtangen_Pedersen_2002) - Propagation of Large Destructive Waves
  Status is not defined, assuming status is "published".
Validating paper: (Langtangen_et_al_2002) - Numerical Methods for Incompressible Viscous Flow
  Status is not defined, assuming status is "published".
Validating paper: (Glimsdal_et_al_20006) - Propagation of the {Dec.~26}, 2004 {Indian Ocean T...
  Status is not defined, assuming status is "published".
Validating paper: (Rahman_et_al_2006b) - Numerical Investigation of a Piezoelectric Surface A...
  Status is not defined, assuming status is "published".

  Unknown journal: "Physical Review B"
  Suggested journal: "Physical Review B: Condensed Matter and Materials Physics"
  Unknown journal, what should I do?
  [1] Replace journal.
  [2] Add journal.
  [3] Skip paper.
Please enter 1, 2 or 3 (or press return to choose [1]): 
Validating paper: (Haga_et_al_2011a) - On the causes of pressure oscillations in low-permeabl...
  Status is not defined, assuming status is "published".

  Unknown journal: "International Journal of Analytical and Numerical Methods in Geomechanics"
  Suggested journal: "International Journal for Numerical Methods in Engineering"
  Unknown journal, what should I do?
  [1] Replace journal.
  [2] Add journal.
  [3] Skip paper.
Please enter 1, 2 or 3 (or press return to choose [1]): 
Validating paper: (Langtangen:95) - Finite elements for the {Boussinesq} wave equations
  Status is not defined, assuming status is "published".
Validating paper: (Langtangen:85) - Solution of the {Navier-Stokes} equations with the finite...
  Status is not defined, assuming status is "published".
Validating paper: (Langtangen:91) - Numerical Methods in Continuum Mechanics
  Status is not defined, assuming status is "published".

  Unknown institution: "Center for Industrial Research"
  Would you like to add institution "Center for Industrial Research"? (y/[n]): Validating paper: (Langtangen:94b) - {Diffpack}: Software for partial differential equations
  Status is not defined, assuming status is "published".
Validating paper: (testdoc:12) - A Document for Testing Doconce
  Status is not defined, assuming status is "published".

  Unknown institution: "Simula Research Laboratory and University of Oslo"
  Suggested institution: "Simula Research Laboratory"
  Unknown institution, what should I do?
  [1] Replace institution.
  [2] Add institution.
  [3] Skip paper.
Please enter 1, 2 or 3 (or press return to choose [1]): 

Validated 10 paper(s) ok.
Found 0 invalid paper(s).


Imported 10 paper(s) from "refs3.bib".

Merging papers
--------------

Need to merge 11 + 10 = 21 papers.


Summary of papers
-----------------

Articles in International Journals: 8
Books:                              3
Edited Books:                       0
Chapters in Books:                  1
Refereed Proceedings:               0
Conference Proceedings:             2
Technical Reports:                  4
Manuals:                            0
Theses:                             2
Courses:                            0
Talks:                              0
Posters:                            0
Public Outreach:                    0
Preprints:                          0
Other Publications:                 1
Total:                              21

Saving backup copy of database to file "papers.pub.bak"
Saving database to file "papers.pub"

double words detected in _testdoc.do.txt (marked inside [...]):
------------------------
ph and subsubsection headings [before
before] code.

__Paragraph heading be
------------------------
running mako on execute.do.txt to make tmp_mako__execute.do.txt
Translating doconce text in tmp_mako__execute.do.txt to html
*** No Jupyter kernels found for julia. The kernels available are:
    python3,bash
    To install Jupyter kernels see https://github.com/jupyter/jupyter/wiki/Jupyter-kernels
*** No Jupyter kernels found for r. The kernels available are:
    python3,bash
    To install Jupyter kernels see https://github.com/jupyter/jupyter/wiki/Jupyter-kernels
*** error: Error in code block:
      File "/tmp/ipykernel_2693/3806628970.py", line 1
    for a in range(10)
                      ^
SyntaxError: invalid syntax

***
output in execute.html
running mako on execute.do.txt to make tmp_mako__execute.do.txt
Translating doconce text in tmp_mako__execute.do.txt to latex
Final all \\label\{(.+?)\}
Warning: found "!bc cycod-h", but cycod-h is not a standard predefined code environment
Warning: found "!bc py-out", but py-out is not a standard predefined code environment
Warning: found "!bc py-out", but py-out is not a standard predefined code environment
*** No Jupyter kernels found for julia. The kernels available are:
    python3,bash
    To install Jupyter kernels see https://github.com/jupyter/jupyter/wiki/Jupyter-kernels
*** No Jupyter kernels found for r. The kernels available are:
    python3,bash
    To install Jupyter kernels see https://github.com/jupyter/jupyter/wiki/Jupyter-kernels
*** error: Error in code block:
      File "/tmp/ipykernel_2748/3806628970.py", line 1
    for a in range(10)
                      ^
SyntaxError: invalid syntax

***
output in execute.p.tex
\bsh (!bc sh) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("sh" is unsupported so we use Verbatim)

\bpy (!bc py) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("py" is unsupported so we use Verbatim)

\bjl (!bc jl) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("jl" is unsupported so we use Verbatim)

\bba (!bc ba) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("ba" is unsupported so we use Verbatim)

\br (!bc r) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("r" is unsupported so we use Verbatim)

\bcycod (!bc cycod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("cycod" is unsupported so we use Verbatim)

\bjava (!bc java) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("java" is unsupported so we use Verbatim)

\bjs (!bc js) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("js" is unsupported so we use Verbatim)

\bdat (!bc dat) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("dat" is unsupported so we use Verbatim)

\bhtml (!bc html) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("html" is unsupported so we use Verbatim)

\bc (!bc c) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("c" is unsupported so we use Verbatim)

\bpycod (!bc pycod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("pycod" is unsupported so we use Verbatim)

output in execute.tex
running mako on execute.do.txt to make tmp_mako__execute.do.txt
Translating doconce text in tmp_mako__execute.do.txt to ipynb
WARNING: DocOnce ipynb got code output, but previous was not code.
output in execute.ipynb
running mako on execute.do.txt to make tmp_mako__execute.do.txt
Translating doconce text in tmp_mako__execute.do.txt to ipynb
WARNING: DocOnce ipynb got code output, but previous was not code.
*** error: Error in code block:
      File "/tmp/ipykernel_2809/1044153563.py", line 1
    for a in range(10)
                      ^
SyntaxError: invalid syntax

output in execute.ipynb
running mako on execute.do.txt to make tmp_mako__execute.do.txt
Translating doconce text in tmp_mako__execute.do.txt to latex
Final all \\label\{(.+?)\}
Warning: found "!bc cycod-h", but cycod-h is not a standard predefined code environment
Warning: found "!bc py-out", but py-out is not a standard predefined code environment
Warning: found "!bc py-out", but py-out is not a standard predefined code environment
output in execute.p.tex
running mako on execute.do.txt to make tmp_mako__execute.do.txt
Translating doconce text in tmp_mako__execute.do.txt to latex
Final all \\label\{(.+?)\}
Warning: found "!bc cycod-h", but cycod-h is not a standard predefined code environment
Warning: found "!bc py-out", but py-out is not a standard predefined code environment
Warning: found "!bc py-out", but py-out is not a standard predefined code environment
*** No Jupyter kernels found for julia. The kernels available are:
    python3,bash
    To install Jupyter kernels see https://github.com/jupyter/jupyter/wiki/Jupyter-kernels
*** No Jupyter kernels found for r. The kernels available are:
    python3,bash
    To install Jupyter kernels see https://github.com/jupyter/jupyter/wiki/Jupyter-kernels
*** error: Error in code block:
      File "/tmp/ipykernel_2832/3806628970.py", line 1
    for a in range(10)
                      ^
SyntaxError: invalid syntax

***
output in execute.p.tex
running mako on execute.do.txt to make tmp_mako__execute.do.txt
Translating doconce text in tmp_mako__execute.do.txt to html
output in execute.html
running mako on execute.do.txt to make tmp_mako__execute.do.txt
Translating doconce text in tmp_mako__execute.do.txt to html
*** No Jupyter kernels found for julia. The kernels available are:
    python3,bash
    To install Jupyter kernels see https://github.com/jupyter/jupyter/wiki/Jupyter-kernels
*** No Jupyter kernels found for r. The kernels available are:
    python3,bash
    To install Jupyter kernels see https://github.com/jupyter/jupyter/wiki/Jupyter-kernels
*** error: Error in code block:
      File "/tmp/ipykernel_2888/3806628970.py", line 1
    for a in range(10)
                      ^
SyntaxError: invalid syntax

***
output in execute.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.githubusercontent.com/doconce/doconce_tests/main/bokeh_test.html ...
    found!
figure file https://raw.githubusercontent.com/doconce/doconce_tests/main/bokeh_test:
    can use https://raw.githubusercontent.com/doconce/doconce_tests/main/bokeh_test.html for format html
... checking existence of https://raw.githubusercontent.com/doconce/doconce_tests/main/testfigs/wave1D.png ...
    found!
... checking existence of https://raw.githubusercontent.com/doconce/doconce_tests/main/testfigs/wave1D.html ...
    found!
figure file https://raw.githubusercontent.com/doconce/doconce_tests/main/testfigs/wave1D:
    can use https://raw.githubusercontent.com/doconce/doconce_tests/main/testfigs/wave1D.html for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
A list of dependencies for HTML output is in .testdoc_html_file_collection
output in testdoc_wordpress.html
running preprocess -DFORMAT=html -DDEVICE=screen -DSOMEVAR testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'html', 'DEVICE': 'screen', 'SOMEVAR': True}
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
<p>Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:
</p>

$$ y(x) = e^{-y}.$$

A list of dependencies for HTML output is in .testdoc_html_file_collection
output in testdoc.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
<p>Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:
</p>

$$ y(x) = e^{-y}.$$

A list of dependencies for HTML output is in .testdoc_html_file_collection
output in testdoc_no_solutions.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file bokeh_test:
    can use bokeh_test.html for format html
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
<p>Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:
</p>

$$ y(x) = e^{-y}.$$

A list of dependencies for HTML output is in .testdoc_html_file_collection
output in testdoc.html

*** warning: reference ref{sec1} - no label found in document
    need generalized reference ref[][][] in the original document for this label!
exercises extracted to testdoc_exer.do.txt
running preprocess -DFORMAT=latex -DDEVICE=screen -DSOMEVAR testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'latex', 'DEVICE': 'screen', 'SOMEVAR': True}
Translating doconce text in tmp_mako__testdoc.do.txt to latex

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
transforming sections: subsection to subsubsection...
transforming sections: section to subsection...
transforming sections: chapter to section...
found info about 11 exercises
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format latex
figure testfigs/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from testfigs/wave1D.png to testfigs/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper testfigs/wave1D.eps file (if possible).

figure testfigs/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from testfigs/wave1D.png to testfigs/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper testfigs/wave1D.eps file (if possible).

... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
Final all \\label\{(.+?)\}

exporting publish database papers.pub to papers.bib:
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
Warning: found "!bc cycod-h", but cycod-h is not a standard predefined code environment
output in testdoc_no_solutions.p.tex
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: found link tag "...": "..." in footnote, which was removed
    from tooltip (since it does not work with bootstrap tooltips)
URL: "google.com" is perhaps the most famous web site today.
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: TITLE may look strange with a template -
             it is recommended to comment out the title: #TITLE:

*** warning: AUTHOR may look strange with a template -
 it is recommended to comment out all authors: #AUTHOR.
 Usually better to hardcode authors in a footer in the template.
A list of dependencies for HTML output is in .testdoc_html_file_collection
output in testdoc_vagrant.html
testdoc_vagrant.html now links to the generated files
._testdoc_vagrant000.html, ._testdoc_vagrant001.html, ._testdoc_vagrant002.html, ._testdoc_vagrant003.html
inline edits applied in testdoc.do.txt
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
*** warning: --pygm_style=emacs is not recommended when --html_style=solarized
    automatically changed to --html_style=perldoc
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
<p>Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:
</p>

$$ y(x) = e^{-y}.$$

A list of dependencies for HTML output is in .testdoc_html_file_collection
output in testdoc.html
no answers/solutions to exercises found in testdoc.html
testdoc.html now links to the generated files
._testdoc000.html, ._testdoc001.html, ._testdoc002.html, ._testdoc003.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
figure file bokeh_test:
    can use bokeh_test.html for format html
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
*** warning: --pygm_style=emacs is not recommended when --html_style=solarized
    automatically changed to --html_style=perldoc
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
<p>Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:
</p>

$$ y(x) = e^{-y}.$$

A list of dependencies for HTML output is in .testdoc_html_file_collection
output in demo_testdoc.html
running preprocess -DFORMAT=latex -DDEVICE=screen -DSOMEVAR testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'latex', 'DEVICE': 'screen', 'SOMEVAR': True}
Translating doconce text in tmp_mako__testdoc.do.txt to latex

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
figure testfigs/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from testfigs/wave1D.png to testfigs/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper testfigs/wave1D.eps file (if possible).

figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format latex
figure testfigs/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from testfigs/wave1D.png to testfigs/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper testfigs/wave1D.eps file (if possible).

... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
Final all \\label\{(.+?)\}

exporting publish database papers.pub to papers.bib:
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
Warning: found "!bc cycod-h", but cycod-h is not a standard predefined code environment


...doconce format used 15.1 s to translate the document (2733 lines)

output in testdoc.p.tex
running preprocess -DFORMAT=pdflatex -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pdflatex

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format pdflatex
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
Final all \\label\{(.+?)\}

exporting publish database papers.pub to papers.bib:
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
Warning: found "!bc cycod-h", but cycod-h is not a standard predefined code environment


...doconce format used 16.3 s to translate the document (2885 lines)

output in testdoc.tex
running preprocess -DFORMAT=pdflatex -DDEVICE=paper  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pdflatex

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format pdflatex
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
Final all \\label\{(.+?)\}

exporting publish database papers.pub to papers.bib:
*** warning: --latex_double_hyphen may lead to unwanted edits.
             search for all -- in the .p.tex file and check.
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
Warning: found "!bc cycod-h", but cycod-h is not a standard predefined code environment


...doconce format used 17.0 s to translate the document (2798 lines)

output in testdoc_bigex.p.tex
replacing vspace{1cm} % after toc by clearpage % after toc in testdoc_bigex.p.tex
(newtheorem\{example\}.*) replaced by \g<1>\n\\newtheorem{theorem}{Theorem}[section] in testdoc_bigex.p.tex
\\paragraph\{Theorem \d+\.\} replaced by <empty string> in testdoc_bigex.p.tex
replacing % begin theorem by \begin{theorem} in testdoc_bigex.p.tex
replacing % end theorem by \end{theorem} in testdoc_bigex.p.tex
replacing Newton--Cotes by Newton-Cotes in testdoc_bigex.p.tex
\bfcod (!bc fcod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("fcod" is unsupported so we use Verbatim)

\bccq (!bc ccq) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("ccq" is unsupported so we use Verbatim)

\bdo (!bc do) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("do" is unsupported so we use Verbatim)

\bpycod (!bc pycod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("pycod" is unsupported so we use Verbatim)

\bpyoptpro (!bc pyoptpro) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("pyoptpro" is unsupported so we use Verbatim)

\bpypro (!bc pypro) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("pypro" is unsupported so we use Verbatim)

\bcycod (!bc cycod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("cycod" is unsupported so we use Verbatim)

\bpyshell (!bc pyshell) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("pyshell" is unsupported so we use Verbatim)

\bipy (!bc ipy) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("ipy" is unsupported so we use Verbatim)

\bcpppro (!bc cpppro) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("cpppro" is unsupported so we use Verbatim)

\bcod (!bc cod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("cod" is unsupported so we use Verbatim)

\bhtmlcod (!bc htmlcod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("htmlcod" is unsupported so we use Verbatim)

\bmcod (!bc mcod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("mcod" is unsupported so we use Verbatim)

\bsys (!bc sys) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("sys" is unsupported so we use Verbatim)

\brestructuredtext (!bc restructuredtext) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("restructuredtext" is unsupported so we use Verbatim)

\bdat (!bc dat) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("dat" is unsupported so we use Verbatim)

output in testdoc_bigex.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
 \write18 enabled.
entering extended mode
(./testdoc_bigex.tex
LaTeX2e <2016/02/01>
Babel <3.9q> and hyphenation patterns for 3 language(s) loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/relsize/relsize.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/setspace/setspace.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/ltablex/ltablex.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.sty
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype-pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
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[20]

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[22]

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[24] [25]
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[26]

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e 2494.


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[28]

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[30]

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[31] [32] (./testdoc_bigex.ind) (./testdoc_bigex.aux)

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 ***********


LaTeX Warning: There were undefined references.


LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.

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Transcript written on testdoc_bigex.log.
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(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/ucs/ucsencs.def)

Package hyperref Warning: Draft mode on.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
ABD: EveryShipout initializing macros ABD: EverySelectfont initializing macros
(./newcommands_bfmath.tex) (./newcommands_replace.tex)
(/usr/share/texmf/tex/latex/lm/t1lmss.fd)
(/usr/share/texmf/tex/latex/lm/ot1lmr.fd)
(/usr/share/texmf/tex/latex/lm/omllmm.fd)
(/usr/share/texmf/tex/latex/lm/omslmsy.fd)
(/usr/share/texmf/tex/latex/lm/omxlmex.fd)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1zplm.fd)
(/usr/share/texmf/tex/latex/lm/t1lmtt.fd) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] (./testdoc_bigex.toc
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 [][] []\T1/lmr/m/n/10 A test of ver-ba-tim words in head-ing with sub-script $
\OML/lmm/m/it/10 a[]$\T1/lmr/m/n/10 : [] and [] |

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[2]) (./testdoc_bigex.loe) (./testdoc_bigex.tdo) [3]
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<latex_figs/dizzy_face.png, id=66, 64.24pt x 64.24pt> [7] [8]
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\T1/lmr/m/n/10 and braces like [], [], [], and []. |
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[11]

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[]|

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[]\T1/lmr/m/n/8 test \T1/lmtt/m/n/8 two \T1/lmr/m/n/8 (sep-a-rate) \T1/lmtt/m/n
/8 verbatim

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[]\T1/lmr/m/n/8 index, with comma, and one

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[15]
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<../doc/src/manual/mov/wave_frames/frame_0080.png, id=108, 586.8324pt x 442.292
4pt>
<../doc/src/manual/mov/wave_frames/frame_0085.png, id=109, 586.8324pt x 442.292
4pt>
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<../doc/src/manual/mov/wave_frames/frame_0105.png, id=113, 586.8324pt x 442.292
4pt> [16] [17] [18]

LaTeX Warning: Citation `Langtangen_Pedersen_2002' on page 19 undefined on inpu
t line 1660.


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 1665.


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t line 1669.


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 1669.


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673.


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673.


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ne 1673.


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t line 1673.


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ine 1675.


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ne 1675.


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 1677.


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1677.


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ine 1679.


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4.

[19] [20]
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[][][]\T1/lmtt/m/n/8 https://www.springer.com/mathematics/computational+science
+%26+engineering/book/978-3-642-23098-1| |

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\T1/lmtt/m/n/10 wikipedia . org / wiki / Newton % E2 % 80 % 93Cotes _ formulas$
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[21]

Package amsmath Warning: Foreign command \over;
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[22] [23] [24] [25] [26]
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[27]
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[28]
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[29] [30] [31] [32] [33] [34] (./testdoc_bigex.ind) (./testdoc_bigex.aux)

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testdoc_bigex.ind
 ***********


LaTeX Warning: There were undefined references.

 )
(see the transcript file for additional information){/usr/share/texmf/fonts/enc
/dvips/lm/lm-ec.enc}{/usr/share/texmf/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/sh
are/texmf/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texmf/fonts/enc/dvips/lm
/lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr
/share/texmf/fonts/enc/dvips/lm/lm-rm.enc}</usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/mathpazo/fplmr.pfb></usr/share/texmf/fonts/type1/public/lm/lmbx10.pfb></usr/sh
are/texmf/fonts/type1/public/lm/lmbx12.pfb></usr/share/texmf/fonts/type1/public
/lm/lmbx8.pfb></usr/share/texmf/fonts/type1/public/lm/lmbx9.pfb></usr/share/tex
mf/fonts/type1/public/lm/lmbxi10.pfb></usr/share/texmf/fonts/type1/public/lm/lm
csc10.pfb></usr/share/texmf/fonts/type1/public/lm/lmex10.pfb></usr/share/texmf/
fonts/type1/public/lm/lmmi10.pfb></usr/share/texmf/fonts/type1/public/lm/lmmi12
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sr/share/texmf/fonts/type1/public/lm/lmr6.pfb></usr/share/texmf/fonts/type1/pub
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xmf/fonts/type1/public/lm/lmri10.pfb></usr/share/texmf/fonts/type1/public/lm/lm
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r/share/texmf/fonts/type1/public/lm/lmtt12.pfb></usr/share/texmf/fonts/type1/pu
blic/lm/lmtt8.pfb></usr/share/texmf/fonts/type1/public/lm/lmtt9.pfb></usr/share
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texlive/texmf-dist/fonts/type1/urw/palatino/uplr8a.pfb>
Output written on testdoc_bigex.pdf (34 pages, 575713 bytes).
Transcript written on testdoc_bigex.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
 \write18 enabled.
entering extended mode
(./testdoc_bigex.tex
LaTeX2e <2016/02/01>
Babel <3.9q> and hyphenation patterns for 3 language(s) loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/relsize/relsize.sty)
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[29] [30] [31] [32] [33] [34] (./testdoc_bigex.ind) (./testdoc_bigex.aux)

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 ***********


LaTeX Warning: There were undefined references.


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 )
(see the transcript file for additional information){/usr/share/texmf/fonts/enc
/dvips/lm/lm-ec.enc}{/usr/share/texmf/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/sh
are/texmf/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texmf/fonts/enc/dvips/lm
/lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr
/share/texmf/fonts/enc/dvips/lm/lm-rm.enc}</usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/mathpazo/fplmr.pfb></usr/share/texmf/fonts/type1/public/lm/lmbx10.pfb></usr/sh
are/texmf/fonts/type1/public/lm/lmbx12.pfb></usr/share/texmf/fonts/type1/public
/lm/lmbx8.pfb></usr/share/texmf/fonts/type1/public/lm/lmbx9.pfb></usr/share/tex
mf/fonts/type1/public/lm/lmbxi10.pfb></usr/share/texmf/fonts/type1/public/lm/lm
csc10.pfb></usr/share/texmf/fonts/type1/public/lm/lmex10.pfb></usr/share/texmf/
fonts/type1/public/lm/lmmi10.pfb></usr/share/texmf/fonts/type1/public/lm/lmmi12
.pfb></usr/share/texmf/fonts/type1/public/lm/lmmi8.pfb></usr/share/texmf/fonts/
type1/public/lm/lmmi9.pfb></usr/share/texmf/fonts/type1/public/lm/lmr10.pfb></u
sr/share/texmf/fonts/type1/public/lm/lmr6.pfb></usr/share/texmf/fonts/type1/pub
lic/lm/lmr8.pfb></usr/share/texmf/fonts/type1/public/lm/lmr9.pfb></usr/share/te
xmf/fonts/type1/public/lm/lmri10.pfb></usr/share/texmf/fonts/type1/public/lm/lm
ri7.pfb></usr/share/texmf/fonts/type1/public/lm/lmri8.pfb></usr/share/texmf/fon
ts/type1/public/lm/lmss12.pfb></usr/share/texmf/fonts/type1/public/lm/lmsy10.pf
b></usr/share/texmf/fonts/type1/public/lm/lmsy8.pfb></usr/share/texmf/fonts/typ
e1/public/lm/lmtk10.pfb></usr/share/texmf/fonts/type1/public/lm/lmtt10.pfb></us
r/share/texmf/fonts/type1/public/lm/lmtt12.pfb></usr/share/texmf/fonts/type1/pu
blic/lm/lmtt8.pfb></usr/share/texmf/fonts/type1/public/lm/lmtt9.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/symbols/msam10.pfb></usr/share/
texlive/texmf-dist/fonts/type1/urw/palatino/uplr8a.pfb>
Output written on testdoc.pdf (32 pages, 571488 bytes).
Transcript written on testdoc.log.
running preprocess -DFORMAT=plain -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to plain

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
standalone exercises in testdoc_exercises.zip
output in testdoc.txt
Archive:  testdoc_exercises.zip
 extracting: standalone_exercises/exercise_1.do.txt  
 extracting: standalone_exercises/flip_coin.do.txt  
 extracting: standalone_exercises/myexer1.do.txt  
 extracting: standalone_exercises/exercise_4.do.txt  
 extracting: standalone_exercises/norm.do.txt  
 extracting: standalone_exercises/subexer_a.do.txt  
 extracting: standalone_exercises/exercise_7.do.txt  
 extracting: standalone_exercises/exercise_8.do.txt  
 extracting: standalone_exercises/exercise_9.do.txt  
 extracting: standalone_exercises/verify_formula.do.txt  
 extracting: standalone_exercises/selc_composed.do.txt  
 extracting: standalone_exercises/solutions.do.txt  
 extracting: standalone_exercises/make.py  
Translating doconce text in exercise_1.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in exercise_1.tex
% #.+ replaced by <empty string> in exercise_1.tex
%.* replaced by <empty string> in exercise_1.tex
Translating doconce text in exercise_1.do.txt to ipynb
output in exercise_1.ipynb
Translating doconce text in exercise_1.do.txt to html
output in exercise_1.html
Translating doconce text in flip_coin.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in flip_coin.tex
% #.+ replaced by <empty string> in flip_coin.tex
%.* replaced by <empty string> in flip_coin.tex
Translating doconce text in flip_coin.do.txt to ipynb
output in flip_coin.ipynb
Translating doconce text in flip_coin.do.txt to html
output in flip_coin.html
Translating doconce text in myexer1.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in myexer1.tex
% #.+ replaced by <empty string> in myexer1.tex
%.* replaced by <empty string> in myexer1.tex
Translating doconce text in myexer1.do.txt to ipynb
output in myexer1.ipynb
Translating doconce text in myexer1.do.txt to html
output in myexer1.html
Translating doconce text in exercise_4.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in exercise_4.tex
% #.+ replaced by <empty string> in exercise_4.tex
%.* replaced by <empty string> in exercise_4.tex
Translating doconce text in exercise_4.do.txt to ipynb
output in exercise_4.ipynb
Translating doconce text in exercise_4.do.txt to html
output in exercise_4.html
Translating doconce text in norm.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in norm.tex
% #.+ replaced by <empty string> in norm.tex
%.* replaced by <empty string> in norm.tex
Translating doconce text in norm.do.txt to ipynb
output in norm.ipynb
Translating doconce text in norm.do.txt to html
output in norm.html
Translating doconce text in subexer_a.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in subexer_a.tex
% #.+ replaced by <empty string> in subexer_a.tex
%.* replaced by <empty string> in subexer_a.tex
Translating doconce text in subexer_a.do.txt to ipynb
output in subexer_a.ipynb
Translating doconce text in subexer_a.do.txt to html
output in subexer_a.html
Translating doconce text in exercise_7.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in exercise_7.tex
% #.+ replaced by <empty string> in exercise_7.tex
%.* replaced by <empty string> in exercise_7.tex
Translating doconce text in exercise_7.do.txt to ipynb
output in exercise_7.ipynb
Translating doconce text in exercise_7.do.txt to html
output in exercise_7.html
Translating doconce text in exercise_8.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in exercise_8.tex
% #.+ replaced by <empty string> in exercise_8.tex
%.* replaced by <empty string> in exercise_8.tex
Translating doconce text in exercise_8.do.txt to ipynb
output in exercise_8.ipynb
Translating doconce text in exercise_8.do.txt to html
output in exercise_8.html
Translating doconce text in exercise_9.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in exercise_9.tex
% #.+ replaced by <empty string> in exercise_9.tex
%.* replaced by <empty string> in exercise_9.tex
Translating doconce text in exercise_9.do.txt to ipynb
output in exercise_9.ipynb
Translating doconce text in exercise_9.do.txt to html
output in exercise_9.html
Translating doconce text in verify_formula.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in verify_formula.tex
% #.+ replaced by <empty string> in verify_formula.tex
%.* replaced by <empty string> in verify_formula.tex
Translating doconce text in verify_formula.do.txt to ipynb
output in verify_formula.ipynb
Translating doconce text in verify_formula.do.txt to html
output in verify_formula.html
Translating doconce text in selc_composed.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in selc_composed.tex
% #.+ replaced by <empty string> in selc_composed.tex
%.* replaced by <empty string> in selc_composed.tex
Translating doconce text in selc_composed.do.txt to ipynb
output in selc_composed.ipynb
Translating doconce text in selc_composed.do.txt to html
output in selc_composed.html
Translating doconce text in solutions.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in solutions.tex
% #.+ replaced by <empty string> in solutions.tex
%.* replaced by <empty string> in solutions.tex
Translating doconce text in solutions.do.txt to ipynb
output in solutions.ipynb
Translating doconce text in solutions.do.txt to html
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
output in solutions.html
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives

===== Titles detected using the section separator:
01_testdoc
Section 1
LaTeX Mathematics
Exercises
Here goes another section
More Exercises
References
Appendix: Just for testing; part I
Appendix: Just for testing; part II
=====

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format pandoc
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format ipynb
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook

Wrote _toc.yml and 9 chapter files to these folders:
  /app/test
  /app/test
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
pattern of separator not found in file
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
pattern of separator not found in file
pattern of separator not found in file
pattern of separator not found in file
pattern of separator not found in file
*** warning : number of titles is larger than chapters and sections detected. These titles will be ignored

===== Titles detected using the section and subsection separators:
01_testdoc
Section 1
Subsection 1
Subsection 2: Testing figures
The $\theta$ parameter (not $\nabla$?)
Custom Environments
Tables
A test of verbatim words in heading with subscript $a_i$: `my_file_v1` and `my_file_v2`
_Just bold_
*Just emphasize*
`Just verbatim`
_Bold_ beginning
*Emphasize* beginning
`Verbatim` beginning
Maybe _bold end_
Maybe *emphasize end*
Maybe `verbatim end`
The middle has _bold_ word
The middle has *emphasize* word
The middle has `verbatim` word
Bibliography test
Example: Examples can be typeset as exercises
User-defined environments
URLs
LaTeX Mathematics
Exercises
Problem: Flip a Coin
Not an exercise
Exercise: Test of plain text exercise
Project: Compute a Probability
Project: Explore Distributions of Random Circles
Exercise: Determine some Distance
{Exercise}: Some exercise without the "Exercise:" prefix
Exercise: Solution of differential equation
Example: Just an example
Here goes another section
More Exercises
Exercise: Make references to projects and problems
Project: References to Project ref{demo:ex:2} in a heading works for pandoc
References
Appendix: Just for testing; part I
A subsection within an appendix
Appendix: Just for testing; part II
Appendix: Testing identical titles
Appendix: Testing identical titles
Appendix: Testing identical titles
Appendix: Testing identical titles
Appendix: Testing inline comments
Appendix: Testing headings ending with `verbatim inline`
=====

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format pandoc
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format ipynb
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook

Wrote _toc.yml and 49 chapter files to these folders:
  /app/test
  /app/test
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
pattern of separator not found in file
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
pattern of separator not found in file
pattern of separator not found in file
pattern of separator not found in file
pattern of separator not found in file

===== Titles detected using the section and subsection separators:
01_testdoc
Section 1
Subsection 1
Subsection 2: Testing figures
The $\theta$ parameter (not $\nabla$?)
Custom Environments
Tables
A test of verbatim words in heading with subscript $a_i$: `my_file_v1` and `my_file_v2`
_Just bold_
*Just emphasize*
`Just verbatim`
_Bold_ beginning
*Emphasize* beginning
`Verbatim` beginning
Maybe _bold end_
Maybe *emphasize end*
Maybe `verbatim end`
The middle has _bold_ word
The middle has *emphasize* word
The middle has `verbatim` word
Bibliography test
Example: Examples can be typeset as exercises
User-defined environments
URLs
LaTeX Mathematics
Exercises
Problem: Flip a Coin
Not an exercise
Exercise: Test of plain text exercise
Project: Compute a Probability
Project: Explore Distributions of Random Circles
Exercise: Determine some Distance
{Exercise}: Some exercise without the "Exercise:" prefix
Exercise: Solution of differential equation
Example: Just an example
Here goes another section
More Exercises
Exercise: Make references to projects and problems
Project: References to Project ref{demo:ex:2} in a heading works for pandoc
References
Appendix: Just for testing; part I
A subsection within an appendix
Appendix: Just for testing; part II
Appendix: Testing identical titles
Appendix: Testing identical titles
Appendix: Testing identical titles
Appendix: Testing identical titles
Appendix: Testing inline comments
Appendix: Testing headings ending with `verbatim inline`
=====

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format pandoc
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format ipynb
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook

Wrote _toc.yml and 49 chapter files to these folders:
  /app/test
  /app/test
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: /app/test/testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: /app/test/testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file /app/test/testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
<p>Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:
</p>

$$ y(x) = e^{-y}.$$

A list of dependencies for HTML output is in .testdoc_html_file_collection
output in testdoc_code_prefix.html
running preprocess -DFORMAT=plain -DDEVICE=screen -DSOMEVAR="1" testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'plain', 'DEVICE': 'screen', 'SOMEVAR': '1'}
Translating doconce text in tmp_mako__testdoc.do.txt to plain

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
output in testdoc.txt
running preprocess -DFORMAT=st -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to st

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
*** warning: footnotes are not supported for format st
    footnotes will be left in the doconce syntax
*** warning: table headline with entries
    | S | command |
   has 2 columns while further down there are 3 columns
   the list of columns in the headline reads
['S', 'command']
   Here is the entire table:
[['horizontal rule'], ['S', 'command'], ['horizontal rule'], ['$ ||a_0|| $', "'norm", "length'"], ['x\\cap y', "'x", "y'"], ['horizontal rule']]
output in testdoc.st
running preprocess -DFORMAT=sphinx -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to sphinx

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** error: heading "=== Here is a list with subsubsection heading ===" is subsubsection and
    comes after section, but will be treated as subsection in sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0105.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0105.png for sphinx
*** warning: hyperlink to URL testdoc.do.txt is to a local file,
    recommended to be _static/testdoc.do.txt for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0090.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0090.png for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0085.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0085.png for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0095.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0095.png for sphinx
*** warning: hyperlink to URL google.com is to a local file,
    recommended to be _static/google.com for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0080.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0080.png for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0100.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0100.png for sphinx
    move linked file to _static and change URLs unless
    you really know that the links will be correct when the
    sphinx build directory is moved to its final destination
*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format sphinx
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
*** warning: new !split inserted (override all existing !split)
    before every ======= heading =======
    because this strategy gives a well-functioning
    table of contents in Sphinx
    (use --sphinx_keep_splits to enforce your own !split commands)
*** warning: sphinx/rst is a suboptimal format for
    typesetting edit markup such as
    [hpl 3: laptops and mobile units -> computers, tablets,
and phones]
    Use HTML or LaTeX output instead, implement the
    edits (doconce apply_edit_comments) and then use sphinx.
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found

*** warning: pyscpro for computer code (sage cells) is requested, but
    icsecontrib.sagecellserver from https://github.com/kriskda/sphinx-sagecell
    is not installed. Using plain Python typesetting instead.
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: ``exp(-x)``, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

.. math::
         y(x) = e^{-y}.

output in testdoc.sphinx.rst
testdoc split into
._testdoc000.rst ._testdoc001.rst ._testdoc002.rst ._testdoc003.rst ._testdoc004.rst ._testdoc005.rst ._testdoc006.rst ._testdoc007.rst ._testdoc008.rst ._testdoc009.rst ._testdoc010.rst
Making sphinx-testdoc
Welcome to the Sphinx 4.3.2 quickstart utility.

Please enter values for the following settings (just press Enter to
accept a default value, if one is given in brackets).

Selected root path: .

Error: an existing conf.py has been found in the selected root path.
sphinx-quickstart will not overwrite existing Sphinx projects.

> Please enter a new root path (or just Enter to exit) []: 
You have two options for placing the build directory for Sphinx output.
Either, you use a directory "_build" within the root path, or you separate
"source" and "build" directories within the root path.
> Separate source and build directories (y/n) [n]: 
The project name will occur in several places in the built documentation.
> Project name: > Author name(s): > Project release []: 
If the documents are to be written in a language other than English,
you can select a language here by its language code. Sphinx will then
translate text that it generates into that language.

For a list of supported codes, see
https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-language.
> Project language [en]: 
Creating file /app/test/sphinx-testdoc/conf.py.
Creating file /app/test/sphinx-testdoc/index.rst.
Creating file /app/test/sphinx-testdoc/Makefile.
Creating file /app/test/sphinx-testdoc/make.bat.

Finished: An initial directory structure has been created.

You should now populate your master file /app/test/sphinx-testdoc/index.rst and create other documentation
source files. Use the Makefile to build the docs, like so:
   make builder
where "builder" is one of the supported builders, e.g. html, latex or linkcheck.

title: A Document for Testing DocOnce
author: Hans Petter Langtangen, Kaare Dump, A. Dummy Author, I. S. Overworked and Outburned and J. Doe
copyright: 

Made with DocOnce
theme: agni

These Sphinx themes were found: ADCtheme, agni, agogo, alabaster, basic, basicstrap, bizstyle, bloodish, bootstrap, cbc, classic, default, epub, fenics, fenics_classic, fenics_minimal1, fenics_minimal2, haiku, jal, nature, pylons, pyramid, scipy_lectures, scrolls, slim-agogo, sphinxdoc, traditional, uio, uio2, vlinux-theme
'automake_sphinx.py' contains the steps to (re)compile the sphinx
version. You may want to edit this file, or run the steps manually,
or just run it by

  python automake_sphinx.py

Removing everything under '_build'...
Running Sphinx v4.3.2
loading translations [0.1]... not available for built-in messages
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [  8%] ._testdoc000
reading sources... [ 16%] ._testdoc001
reading sources... [ 25%] ._testdoc002
reading sources... [ 33%] ._testdoc003
reading sources... [ 41%] ._testdoc004
reading sources... [ 50%] ._testdoc005
reading sources... [ 58%] ._testdoc006
reading sources... [ 66%] ._testdoc007
reading sources... [ 75%] ._testdoc008
reading sources... [ 83%] ._testdoc009
reading sources... [ 91%] ._testdoc010
reading sources... [100%] index

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  8%] ._testdoc000
writing output... [ 16%] ._testdoc001
writing output... [ 25%] ._testdoc002
writing output... [ 33%] ._testdoc003
writing output... [ 41%] ._testdoc004
writing output... [ 50%] ._testdoc005
writing output... [ 58%] ._testdoc006
writing output... [ 66%] ._testdoc007
writing output... [ 75%] ._testdoc008
writing output... [ 83%] ._testdoc009
writing output... [ 91%] ._testdoc010
writing output... [100%] index

generating indices... genindex done
writing additional pages... search done
copying images... [100%] wave1D.png

copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 10 warnings.

The HTML pages are in _build/html.
copy: testfigs/wave1D.png to sphinx-testdoc
/app/test/sphinx-testdoc
running make clean
running make html
Fix generated files:
genindex.html
index.html
search.html
._testdoc000.html
._testdoc001.html
._testdoc002.html
._testdoc003.html
._testdoc004.html
._testdoc005.html
._testdoc006.html
._testdoc007.html
._testdoc008.html
._testdoc009.html
._testdoc010.html


google-chrome sphinx-testdoc/_build/html/index.html

running preprocess -DFORMAT=rst -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to rst

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** error: heading "=== Here is a list with subsubsection heading ===" is subsubsection and
    comes after section, but will be treated as subsection in rst
*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format rst
output in testdoc.rst
running preprocess -DFORMAT=epytext -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to epytext

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
*** warning: footnotes are not supported for format epytext
    footnotes will be left in the doconce syntax
output in testdoc.epytext
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pandoc

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format pandoc
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.
output in testdoc.md
running preprocess -DFORMAT=mwiki -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to mwiki

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format mwiki
 ...checking if wave1D.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file wave1D.png to
    common.wikimedia.org
 ...for now we use local file Wave1D.png
 ...checking if wave1D.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file wave1D.png to
    common.wikimedia.org
 ...for now we use local file Wave1D.png
 ...checking if wave1D.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file wave1D.png to
    common.wikimedia.org
 ...for now we use local file Wave1D.png
 ...checking if df_plot.png is stored at en.wikipedia.org/w/api.php...
 ...found Df plot.png at wikimedia
 ...checking if df2s8765s_plot.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file df2s8765s_plot.png to
    common.wikimedia.org
 ...for now we use local file Df2s8765s plot.png
*** warning: footnotes are not supported for format mwiki
    footnotes will be left in the doconce syntax
*** warning: reference to label "mymatrix:eq1" in an equation does not work in MediaWiki
*** warning: reference to label "mymatrix:eq2" in an equation does not work in MediaWiki
*** warning: reference to label "my:eq1" in an equation does not work in MediaWiki
*** warning: reference to label "circle:x" in an equation does not work in MediaWiki
*** warning: reference to label "circle:y" in an equation does not work in MediaWiki
output in testdoc.mwiki
running preprocess -DFORMAT=cwiki -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to cwiki

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format cwiki
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format cwiki
    footnotes will be left in the doconce syntax
*** warning: table headline with entries
    |  |  |  |
   has 3 columns while further down there are 5 columns
   the list of columns in the headline reads
['', '', '']
   Here is the entire table:
[['horizontal rule'], ['', '', ''], ['horizontal rule'], ['{{{\\mathcal{L}=0}}}', '[[../doc/src/manual/mov/wave_frames/frame_0080.png', '{{{080}}}]]', '[[../doc/src/manual/mov/wave_frames/frame_0085.png', '{{{085}}}]]'], ['{{{a=b}}}', '[[../doc/src/manual/mov/wave_frames/frame_0090.png', '{{{090}}}]]', '[[../doc/src/manual/mov/wave_frames/frame_0095.png', '{{{095}}}]]'], ['{{{\\nabla\\cdot\\bm{u} =0 }}}', '[[../doc/src/manual/mov/wave_frames/frame_0100.png', '{{{100}}}]]', '[[../doc/src/manual/mov/wave_frames/frame_0105.png', '{{{105}}}]]'], ['horizontal rule']]
output in testdoc.cwiki
running preprocess -DFORMAT=ipynb -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to ipynb

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format ipynb
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
output in testdoc.ipynb
running preprocess -DFORMAT=matlabnb -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to matlabnb

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format matlabnb
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align*}-\end{align*} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
output in testdoc.m
running preprocess -DFORMAT=gwiki -DDEVICE=screen -DMYVAR1="3" -DMYVAR2="a string" testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'gwiki', 'DEVICE': 'screen', 'MYVAR1': 3, 'MYVAR2': 'a string'}
Translating doconce text in tmp_mako__testdoc.do.txt to gwiki

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format gwiki

NOTE: Place testfigs/wave1D.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL


NOTE: Place testfigs/wave1D.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL


NOTE: Place testfigs/wave1D.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL


NOTE: Place https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL

*** warning: footnotes are not supported for format gwiki
    footnotes will be left in the doconce syntax
output in testdoc.gwiki
running preprocess -DFORMAT=latex -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to latex

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
found info about 11 exercises
figure testfigs/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from testfigs/wave1D.png to testfigs/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper testfigs/wave1D.eps file (if possible).

... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format latex
figure testfigs/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from testfigs/wave1D.png to testfigs/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper testfigs/wave1D.eps file (if possible).

... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
Final all \\label\{(.+?)\}

exporting publish database papers.pub to papers.bib:
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
Warning: found "!bc cycod-h", but cycod-h is not a standard predefined code environment
output in testdoc.p.tex
\bfcod (!bc fcod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("fcod" is unsupported so we use Verbatim)

\bccq (!bc ccq) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("ccq" is unsupported so we use Verbatim)

\bdo (!bc do) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("do" is unsupported so we use Verbatim)

\bpycod (!bc pycod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("pycod" is unsupported so we use Verbatim)

\bpypro (!bc pypro) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("pypro" is unsupported so we use Verbatim)

\bcycod (!bc cycod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("cycod" is unsupported so we use Verbatim)

\bpyshell (!bc pyshell) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("pyshell" is unsupported so we use Verbatim)

\bipy (!bc ipy) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("ipy" is unsupported so we use Verbatim)

\bcpppro (!bc cpppro) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("cpppro" is unsupported so we use Verbatim)

\bcod (!bc cod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("cod" is unsupported so we use Verbatim)

\bhtmlcod (!bc htmlcod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("htmlcod" is unsupported so we use Verbatim)

\bmcod (!bc mcod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("mcod" is unsupported so we use Verbatim)

\bsys (!bc sys) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("sys" is unsupported so we use Verbatim)

\brestructuredtext (!bc restructuredtext) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("restructuredtext" is unsupported so we use Verbatim)

\bdat (!bc dat) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("dat" is unsupported so we use Verbatim)

output in testdoc.tex
replacing \Verb! by \verb! in testdoc.tex
replacing %E2%80%93 by  in testdoc.tex
replacing +%26+ by  in testdoc.tex
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pandoc

*** warning: found multi-line caption for testfigs/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: testfigs/__testcode.f, lines 3-16  (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: testfigs/__testcode.f, lines 2-11  (format: fcod)
copy complete file testfigs/__testcode.f  (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.githubusercontent.com/doconce/doconce_doc/main/src/blog/f_plot.png ...
    found!
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format pandoc
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.
output in testdoc.md
Translating doconce text in slides1.do.txt to html
A list of dependencies for HTML output is in .slides1_html_file_collection
output in slides1.html
made subdirectory reveal.js
slides written to slides1.html
Translating doconce text in slides1.do.txt to html
A list of dependencies for HTML output is in .slides1_html_file_collection
output in slides1.html
slides written to slides1.html
Translating doconce text in slides1.do.txt to pandoc
output in slides1.md
remark slides in slides1.html
Translating doconce text in slides1.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in slides1.tex
slides written to slides1.tex
printing for handout:
pdfnup --nup 2x3 --frame true --delta "1cm 1cm" --scale 0.9 --outfile slides1.pdf slides1.pdf
or uncomment %\pgfpagesuselayout{... in slides1.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
 \write18 enabled.
entering extended mode
(./slides1.tex
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.code.tex)
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)
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zlibrarytopaths.code.tex)))
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Writing index file slides1.idx
(./slides1.aux)
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
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[Loading MPS to PDF converter (version 2006.09.02).]
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ABD: EveryShipout initializing macros
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./slides1.out) (./slides1.out)
(/usr/share/texlive/texmf-dist/tex/latex/beamer/translator/dicts/translator-bas
ic-dictionary/translator-basic-dictionary-English.dict)
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liography-dictionary/translator-bibliography-dictionary-English.dict)
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ironment-dictionary/translator-environment-dictionary-English.dict)
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ths-dictionary/translator-months-dictionary-English.dict)
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bers-dictionary/translator-numbers-dictionary-English.dict)
(/usr/share/texlive/texmf-dist/tex/latex/beamer/translator/dicts/translator-the
orem-dictionary/translator-theorem-dictionary-English.dict) (./slides1.nav)
(./newcommands_bfmath.tex) (./newcommands_replace.tex)

Package hyperref Warning: Option `pdfauthor' has already been used,
(hyperref)                setting the option has no effect on input line 232.

(./slides1.vrb (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/sansmathaccent/ot1mathkerncmss.fd))
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (./slides1.toc) [2]
(./slides1.vrb <testfigs/wave1D.png, id=72, 586.8324pt x 442.2924pt>
<use testfigs/wave1D.png>) [3 <./testfigs/wave1D.png>] (./slides1.vrb
<use testfigs/wave1D.png>) [4] (./slides1.vrb) [5] (./slides1.vrb) [6]
(./slides1.vrb (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty)
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(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd)) [7] (./slides1.vrb)
[8] (./slides1.vrb) [9] (./slides1.vrb) [10] (./slides1.vrb
(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty)
(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)) [11]
(./slides1.toc) [12] (./slides1.vrb <use testfigs/wave1D.png>) [13]
(./slides1.vrb (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty)
(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty)) [14]
(./slides1.vrb (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty))
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(./slides1.vrb) [19] (./slides1.vrb) [20] (./slides1.vrb) [21] (./slides1.aux) 
) </root/.texmf-var/fonts/pk/ljfour/jknappen/ec/ecst1000.600pk> </root/.texmf-v
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ic/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
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Output written on slides1.pdf (21 pages, 214036 bytes).
Transcript written on slides1.log.
running preprocess -DFORMAT=html -DDEVICE=screen  slides2.do.txt > tmp_preprocess__slides2.do.txt
Translating doconce text in tmp_preprocess__slides2.do.txt to html
copy complete file ../doc/src/slides/src/solver.pyopt  (format: pyoptpro)
found info about 1 exercises
figure file testfigs/broken_pen_and_paper:
    can use testfigs/broken_pen_and_paper.jpg for format html
figure file testfigs/doconce1b:
    can use testfigs/doconce1b.png for format html
figure file testfigs/ipad:
    can use testfigs/ipad.png for format html
figure file testfigs/imac:
    can use testfigs/imac.png for format html
figure file testfigs/iphones:
    can use testfigs/iphones.jpg for format html
figure file testfigs/teacher1:
    can use testfigs/teacher1.gif for format html
figure file testfigs/latex_paper1:
    can use testfigs/latex_paper1.png for format html
figure file testfigs/latex_thesis:
    can use testfigs/latex_thesis.jpg for format html
figure file testfigs/oldbooks:
    can use testfigs/oldbooks.jpg for format html
A list of dependencies for HTML output is in .slides2_html_file_collection
output in slides2.html
*** warning: pygments style "emacs" is not recommended for "beigesmall"!
recommended styles are "perldoc"
*** warning: pygments style "emacs" is not recommended for "beigesmall"!
recommended styles are "perldoc"
*** warning: pygments style "emacs" is not recommended for "beigesmall"!
recommended styles are "perldoc"
*** warning: pygments style "emacs" is not recommended for "beigesmall"!
recommended styles are "perldoc"
*** warning: pygments style "emacs" is not recommended for "beigesmall"!
recommended styles are "perldoc"
*** warning: pygments style "emacs" is not recommended for "beigesmall"!
recommended styles are "perldoc"
*** warning: pygments style "emacs" is not recommended for "beigesmall"!
recommended styles are "perldoc"
*** warning: pygments style "emacs" is not recommended for "beigesmall"!
recommended styles are "perldoc"
*** warning: pygments style "emacs" is not recommended for "beigesmall"!
recommended styles are "perldoc"
*** warning: pygments style "emacs" is not recommended for "beigesmall"!
recommended styles are "perldoc"
*** warning: pygments style "emacs" is not recommended for "beigesmall"!
recommended styles are "perldoc"
slides written to slides2.html
running preprocess -DFORMAT=pdflatex -DDEVICE=screen -DBEAMER slides2.do.txt > tmp_preprocess__slides2.do.txt
Translating doconce text in tmp_preprocess__slides2.do.txt to pdflatex
copy complete file ../doc/src/slides/src/solver.pyopt  (format: pyoptpro)
figure file testfigs/doconce1b:
    can use testfigs/doconce1b.png for format pdflatex
figure file testfigs/ipad:
    can use testfigs/ipad.png for format pdflatex
figure file testfigs/latex_thesis:
    can use testfigs/latex_thesis.jpg for format pdflatex
figure file testfigs/latex_paper1:
    can use testfigs/latex_paper1.png for format pdflatex
figure file testfigs/iphones:
    can use testfigs/iphones.jpg for format pdflatex
figure file testfigs/imac:
    can use testfigs/imac.png for format pdflatex
figure file testfigs/oldbooks:
    can use testfigs/oldbooks.jpg for format pdflatex
Final all \\label\{(.+?)\}
output in slides2.p.tex
\bdo (!bc do) -> \begin{minted}[fontsize=\fontsize{9pt}{9pt},linenos=false,mathescape,baselinestretch=1.0,fontfamily=tt,xleftmargin=7mm]{doconce}

\bpycod (!bc py) -> \begin{minted}[fontsize=\fontsize{9pt}{9pt},linenos=false,mathescape,baselinestretch=1.0,fontfamily=tt,xleftmargin=7mm]{python}

\bpypro (!bc py) -> \begin{minted}[fontsize=\fontsize{9pt}{9pt},linenos=false,mathescape,baselinestretch=1.0,fontfamily=tt,xleftmargin=7mm]{python}

\bdat (!bc dat) -> \begin{minted}[fontsize=\fontsize{9pt}{9pt},linenos=false,mathescape,baselinestretch=1.0,fontfamily=tt,xleftmargin=7mm]{text}

output in slides2.tex
slides written to slides2.tex
running preprocess -DFORMAT=html -DDEVICE=screen -DSLIDE_TYPE="reveal" -DSLIDE_THEME="beigesmall" slides3.do.txt > tmp_preprocess__slides3.do.txt
running mako on tmp_preprocess__slides3.do.txt to make tmp_mako__slides3.do.txt
mako variables: {'FORMAT': 'html', 'DEVICE': 'screen', 'SLIDE_TYPE': 'reveal', 'SLIDE_THEME': 'beigesmall'}
Translating doconce text in tmp_mako__slides3.do.txt to html
copying from regex "def solver" until "def exact_sol"
     file: ../doc/src/slides/src/solver.py, lines 9-22  (format: pycod)
figure file ../doc/src/slides/fig/CN:
    can use ../doc/src/slides/fig/CN.png for format html
figure file ../doc/src/slides/fig/teacher2:
    can use ../doc/src/slides/fig/teacher2.jpg for format html
figure file ../doc/src/slides/fig/CN_logo:
    can use ../doc/src/slides/fig/CN_logo.png for format html
*** warning: inline math in HTML must have space around <:
    0= t_0< t_1 \cdots < t_N=T  ->  0= t_0 < t_1 \cdots < t_N=T
A list of dependencies for HTML output is in .slides3_html_file_collection
output in slides3.html
*** warning: pygments style "emacs" is not recommended for "beige"!
recommended styles are "perldoc"
slides written to slides3.html
running preprocess -DFORMAT=html -DDEVICE=screen -DSLIDE_TYPE="doconce" -DSLIDE_THEME="solarized3" slides3.do.txt > tmp_preprocess__slides3.do.txt
running mako on tmp_preprocess__slides3.do.txt to make tmp_mako__slides3.do.txt
mako variables: {'FORMAT': 'html', 'DEVICE': 'screen', 'SLIDE_TYPE': 'doconce', 'SLIDE_THEME': 'solarized3'}
Translating doconce text in tmp_mako__slides3.do.txt to html
copying from regex "def solver" until "def exact_sol"
     file: ../doc/src/slides/src/solver.py, lines 9-22  (format: pycod)
figure file ../doc/src/slides/fig/CN:
    can use ../doc/src/slides/fig/CN.png for format html
figure file ../doc/src/slides/fig/CN_logo:
    can use ../doc/src/slides/fig/CN_logo.png for format html
figure file ../doc/src/slides/fig/teacher2:
    can use ../doc/src/slides/fig/teacher2.jpg for format html
*** warning: inline math in HTML must have space around <:
    0= t_0< t_1 \cdots < t_N=T  ->  0= t_0 < t_1 \cdots < t_N=T
A list of dependencies for HTML output is in .slides3_html_file_collection
output in slides3-solarized3.html
running preprocess -DFORMAT=pdflatex -DDEVICE=screen -DSLIDE_TYPE="beamer" -DSLIDE_THEME="red_plain" slides3.do.txt > tmp_preprocess__slides3.do.txt
running mako on tmp_preprocess__slides3.do.txt to make tmp_mako__slides3.do.txt
mako variables: {'FORMAT': 'pdflatex', 'DEVICE': 'screen', 'SLIDE_TYPE': 'beamer', 'SLIDE_THEME': 'red_plain'}
Translating doconce text in tmp_mako__slides3.do.txt to pdflatex
copying from regex "def solver" until "def exact_sol"
     file: ../doc/src/slides/src/solver.py, lines 9-22  (format: pycod)
figure file ../doc/src/slides/fig/teacher2:
    can use ../doc/src/slides/fig/teacher2.jpg for format pdflatex
figure file ../doc/src/slides/fig/CN_logo:
    can use ../doc/src/slides/fig/CN_logo.pdf for format pdflatex
figure file ../doc/src/slides/fig/CN:
    can use ../doc/src/slides/fig/CN.pdf for format pdflatex
Final all \\label\{(.+?)\}
output in slides3.p.tex
\bpycod (!bc py) -> \begin{minted}[fontsize=\fontsize{9pt}{9pt},linenos=false,mathescape,baselinestretch=1.0,fontfamily=tt,xleftmargin=7mm]{python}

output in slides3.tex
slides written to slides3.tex
Translating doconce text in slides1.do.txt to html
A list of dependencies for HTML output is in .slides1_html_file_collection
output in slides1.html
run
  sh tmp_slides_html_all.sh
to generate the slides
Translating doconce text in html_template.do.txt to html
output in html_template.html
Translating doconce text in html_template.do.txt to html
output in html_template.html
running mako on author1.do.txt to make tmp_mako__author1.do.txt
Translating doconce text in tmp_mako__author1.do.txt to html
output in author1.html
running mako on author1.do.txt to make tmp_mako__author1.do.txt
Translating doconce text in tmp_mako__author1.do.txt to latex
Final all \\label\{(.+?)\}

exporting publish database papers.pub to papers.bib:

*** warning: need external file testdoc.aux for external references,
    but it does not exist (compile latex/pdflatex!)
output in author1.p.tex
running mako on author1.do.txt to make tmp_mako__author1.do.txt
Translating doconce text in tmp_mako__author1.do.txt to sphinx
output in author1.rst
running mako on author1.do.txt to make tmp_mako__author1.do.txt
Translating doconce text in tmp_mako__author1.do.txt to plain
output in author1.txt
Translating doconce text in author2.do.txt to pdflatex
Final all \\label\{(.+?)\}

exporting publish database papers.pub to papers.bib:
output in author2.p.tex
output in author2.tex
Translating doconce text in author2.do.txt to pdflatex
Final all \\label\{(.+?)\}

exporting publish database papers.pub to papers.bib:
output in author2.p.tex
output in author2.tex
replacing fig/oscillator_general by ../doc/src/ipynb/fig/oscillator_general in nbdemo.do.txt
running mako on nbdemo.do.txt to make tmp_mako__nbdemo.do.txt
Translating doconce text in tmp_mako__nbdemo.do.txt to ipynb
figure file ../doc/src/ipynb/fig/oscillator_general:
    can use ../doc/src/ipynb/fig/oscillator_general.png for format ipynb
collected all required additional files in ipynb-nbdemo-src.tar.gz which must be distributed with the notebook
output in nbdemo.ipynb
output in nbdemo_ipynb2doconce.do.txt
running preprocess -DFORMAT=pdflatex -DDEVICE=screen  math_test.do.txt > tmp_preprocess__math_test.do.txt
running mako on tmp_preprocess__math_test.do.txt to make tmp_mako__math_test.do.txt
Translating doconce text in tmp_mako__math_test.do.txt to pdflatex
Final all \\label\{(.+?)\}
output in math_test.p.tex
\blatexcod (!bc latexcod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("latexcod" is unsupported so we use Verbatim)

\bdat (!bc dat) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("dat" is unsupported so we use Verbatim)

output in math_test.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./math_test.tex
LaTeX2e <2016/02/01>
Babel <3.9q> and hyphenation patterns for 3 language(s) loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
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(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/setspace/setspace.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
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(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
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(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/ltablex/ltablex.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty))
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(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype-pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.cfg))
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(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix 
<2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/ucs/ucs.sty
(/usr/share/texlive/texmf-dist/tex/latex/ucs/data/uni-global.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/ucs/utf8x.def))
(/usr/share/texmf/tex/latex/lm/lmodern.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))

Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))
Writing index file math_test.idx
(/usr/share/texlive/texmf-dist/tex/latex/idxlayout/idxlayout.sty
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tocbibind/tocbibind.sty

Package tocbibind Note: Using section or other style headings.

) (/usr/share/texlive/texmf-dist/tex/latex/ms/ragged2e.sty
(/usr/share/texlive/texmf-dist/tex/latex/ms/everysel.sty))
No file math_test.aux.
(/usr/share/texmf/tex/latex/lm/t1lmr.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/microtype/mt-cmr.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/ucs/ucsencs.def)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./math_test.out) (./math_test.out) ABD: EverySelectfont initializing macros
(./newcommands_bfmath.tex) (./newcommands_replace.tex)
(/usr/share/texmf/tex/latex/lm/ot1lmr.fd)
(/usr/share/texmf/tex/latex/lm/omllmm.fd)
(/usr/share/texmf/tex/latex/lm/omslmsy.fd)
(/usr/share/texmf/tex/latex/lm/omxlmex.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/mt-msa.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/mt-msb.cfg)
(/usr/share/texmf/tex/latex/lm/t1lmtt.fd) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}]

LaTeX Warning: Reference `_eq1b' on page 2 undefined on input line 181.

[2]

LaTeX Warning: Reference `_eq2b' on page 3 undefined on input line 246.


LaTeX Warning: Reference `_eq3b' on page 3 undefined on input line 246.


Overfull \hbox (2.2529pt too wide) in paragraph at lines 305--305
[]\T1/lmr/bx/n/12 Test 6: Mul-ti-ple, aligned equa-tions with mul-ti-ple align-

[3] [4]

LaTeX Warning: Reference `_eq2c' on page 5 undefined on input line 424.


LaTeX Warning: Reference `_eq3c' on page 5 undefined on input line 424.


LaTeX Warning: Reference `_multiline:eq1' on page 5 undefined on input line 461
.

[5] [6] [7] [8] [9] (./math_test.aux)

 *File List*
 article.cls    2014/09/29 v1.4h Standard LaTeX document class
  size10.clo    2014/09/29 v1.4h Standard LaTeX file (size option)
 relsize.sty    2013/03/29 ver 4.1
 makeidx.sty    2014/09/29 v1.0m Standard LaTeX package
   color.sty    1999/02/16
   color.cfg    2007/01/18 v1.5 color configuration of teTeX/TeXLive
  pdftex.def    2011/05/27 v0.06d Graphics/color for pdfTeX
infwarerr.sty    2010/04/08 v1.3 Providing info/warning/error messages (HO)
 ltxcmds.sty    2011/11/09 v1.22 LaTeX kernel commands for general use (HO)
setspace.sty    2011/12/19 v6.7a set line spacing
 amsmath.sty    2016/03/03 v2.15a AMS math features
 amstext.sty    2000/06/29 v2.01 AMS text
  amsgen.sty    1999/11/30 v2.0 generic functions
  amsbsy.sty    1999/11/29 v1.2d Bold Symbols
  amsopn.sty    1999/12/14 v2.01 operator names
amsfonts.sty    2013/01/14 v3.01 Basic AMSFonts support
 amssymb.sty    2013/01/14 v3.01 AMS font symbols
  xcolor.sty    2007/01/21 v2.11 LaTeX color extensions (UK)
   color.cfg    2007/01/18 v1.5 color configuration of teTeX/TeXLive
colortbl.sty    2012/02/13 v1.0a Color table columns (DPC)
   array.sty    2014/10/28 v2.4c Tabular extension package (FMi)
      bm.sty    2014/10/28 v1.1c Bold Symbol Support (DPC/FMi)
 ltablex.sty    2014/08/13 v1.1 Modified tabularx
longtable.sty    2014/10/28 v4.11 Multi-page Table package (DPC)
tabularx.sty    2014/10/28 v2.10 `tabularx' package (DPC)
microtype.sty    2013/05/23 v2.5a Micro-typographical refinements (RS)
  keyval.sty    2014/10/28 v1.15 key=value parser (DPC)
microtype-pdftex.def    2013/05/23 v2.5a Definitions specific to pdftex (RS)
microtype.cfg    2013/05/23 v2.5a microtype main configuration file (RS)
graphicx.sty    2014/10/28 v1.0g Enhanced LaTeX Graphics (DPC,SPQR)
graphics.sty    2016/01/03 v1.0q Standard LaTeX Graphics (DPC,SPQR)
    trig.sty    2016/01/03 v1.10 sin cos tan (DPC)
graphics.cfg    2010/04/23 v1.9 graphics configuration of TeX Live
fancyvrb.sty    2008/02/07
 fontenc.sty
   t1enc.def    2005/09/27 v1.99g Standard LaTeX file
     ucs.sty    2013/05/11 v2.2 UCS: Unicode input support
uni-global.def    2013/05/13 UCS: Unicode global data
inputenc.sty    2015/03/17 v1.2c Input encoding file
   utf8x.def    2004/10/17 UCS: Input encoding UTF-8
 lmodern.sty    2009/10/30 v1.6 Latin Modern Fonts
hyperref.sty    2012/11/06 v6.83m Hypertext links for LaTeX
hobsub-hyperref.sty    2012/05/28 v1.13 Bundle oberdiek, subset hyperref (HO)
hobsub-generic.sty    2012/05/28 v1.13 Bundle oberdiek, subset generic (HO)
  hobsub.sty    2012/05/28 v1.13 Construct package bundles (HO)
ifluatex.sty    2010/03/01 v1.3 Provides the ifluatex switch (HO)
  ifvtex.sty    2010/03/01 v1.5 Detect VTeX and its facilities (HO)
 intcalc.sty    2007/09/27 v1.1 Expandable calculations with integers (HO)
   ifpdf.sty    2011/01/30 v2.3 Provides the ifpdf switch (HO)
etexcmds.sty    2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO)
kvsetkeys.sty    2012/04/25 v1.16 Key value parser (HO)
kvdefinekeys.sty    2011/04/07 v1.3 Define keys (HO)
pdftexcmds.sty    2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO)
pdfescape.sty    2011/11/25 v1.13 Implements pdfTeX's escape features (HO)
bigintcalc.sty    2012/04/08 v1.3 Expandable calculations on big integers (HO)
  bitset.sty    2011/01/30 v1.1 Handle bit-vector datatype (HO)
uniquecounter.sty    2011/01/30 v1.2 Provide unlimited unique counter (HO)
letltxmacro.sty    2010/09/02 v1.4 Let assignment for LaTeX macros (HO)
 hopatch.sty    2012/05/28 v1.2 Wrapper for package hooks (HO)
xcolor-patch.sty    2011/01/30 xcolor patch
atveryend.sty    2011/06/30 v1.8 Hooks at the very end of document (HO)
atbegshi.sty    2011/10/05 v1.16 At begin shipout hook (HO)
refcount.sty    2011/10/16 v3.4 Data extraction from label references (HO)
 hycolor.sty    2011/01/30 v1.7 Color options for hyperref/bookmark (HO)
 ifxetex.sty    2010/09/12 v0.6 Provides ifxetex conditional
 auxhook.sty    2011/03/04 v1.3 Hooks for auxiliary files (HO)
kvoptions.sty    2011/06/30 v3.11 Key value format for package options (HO)
  pd1enc.def    2012/11/06 v6.83m Hyperref: PDFDocEncoding definition (HO)
hyperref.cfg    2002/06/06 v1.2 hyperref configuration of TeXLive
     url.sty    2013/09/16  ver 3.4  Verb mode for urls, etc.
 hpdftex.def    2012/11/06 v6.83m Hyperref driver for pdfTeX
rerunfilecheck.sty    2011/04/15 v1.7 Rerun checks for auxiliary files (HO)
idxlayout.sty    2012/03/30 v0.4d Configurable index layout
etoolbox.sty    2015/08/02 v2.2a e-TeX tools for LaTeX (JAW)
multicol.sty    2015/08/19 v1.8n multicolumn formatting (FMi)
tocbibind.sty    2010/10/13 v1.5k extra ToC listings
ragged2e.sty    2009/05/21 v2.1 ragged2e Package (MS)
everysel.sty    2011/10/28 v1.2 EverySelectfont Package (MS)
   t1lmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
supp-pdf.mkii
  mt-cmr.cfg    2013/05/19 v2.2 microtype config. file: Computer Modern Roman (
RS)
epstopdf-base.sty    2010/02/09 v2.5 Base part for package epstopdf
  grfext.sty    2010/08/19 v1.1 Manage graphics extensions (HO)
epstopdf-sys.cfg    2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Live
 ucsencs.def    2011/01/21 Fixes to fontencodings LGR, T3
 nameref.sty    2012/10/27 v2.43 Cross-referencing by name of section
gettitlestring.sty    2010/12/03 v1.4 Cleanup title references (HO)
math_test.out
math_test.out
newcommands_bfmath.tex
newcommands_replace.tex
  ot1lmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
  omllmm.fd    2009/10/30 v1.6 Font defs for Latin Modern
 omslmsy.fd    2009/10/30 v1.6 Font defs for Latin Modern
 omxlmex.fd    2009/10/30 v1.6 Font defs for Latin Modern
    umsa.fd    2013/01/14 v3.01 AMS symbols A
  mt-msa.cfg    2006/02/04 v1.1 microtype config. file: AMS symbols (a) (RS)
    umsb.fd    2013/01/14 v3.01 AMS symbols B
  mt-msb.cfg    2005/06/01 v1.0 microtype config. file: AMS symbols (b) (RS)
  t1lmtt.fd    2009/10/30 v1.6 Font defs for Latin Modern
 ***********


LaTeX Warning: There were undefined references.


LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.

 )
(see the transcript file for additional information){/usr/share/texmf/fonts/enc
/dvips/lm/lm-mathex.enc}{/usr/share/texmf/fonts/enc/dvips/lm/lm-ec.enc}{/usr/sh
are/texmf/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/share/texmf/fonts/enc/dvips/lm
/lm-rm.enc}{/usr/share/texmf/fonts/enc/dvips/lm/lm-mathit.enc}</usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmmib10.pfb></usr/share/texmf/font
s/type1/public/lm/lmbx10.pfb></usr/share/texmf/fonts/type1/public/lm/lmbx12.pfb
></usr/share/texmf/fonts/type1/public/lm/lmbx9.pfb></usr/share/texmf/fonts/type
1/public/lm/lmex10.pfb></usr/share/texmf/fonts/type1/public/lm/lmmi10.pfb></usr
/share/texmf/fonts/type1/public/lm/lmmi7.pfb></usr/share/texmf/fonts/type1/publ
ic/lm/lmr10.pfb></usr/share/texmf/fonts/type1/public/lm/lmr6.pfb></usr/share/te
xmf/fonts/type1/public/lm/lmr7.pfb></usr/share/texmf/fonts/type1/public/lm/lmr9
.pfb></usr/share/texmf/fonts/type1/public/lm/lmsy10.pfb></usr/share/texmf/fonts
/type1/public/lm/lmsy7.pfb></usr/share/texmf/fonts/type1/public/lm/lmtk10.pfb><
/usr/share/texmf/fonts/type1/public/lm/lmtt10.pfb></usr/share/texmf/fonts/type1
/public/lm/lmtt9.pfb>
Output written on math_test.pdf (9 pages, 295348 bytes).
Transcript written on math_test.log.
running preprocess -DFORMAT=html -DDEVICE=screen  math_test.do.txt > tmp_preprocess__math_test.do.txt
running mako on tmp_preprocess__math_test.do.txt to make tmp_mako__math_test.do.txt
Translating doconce text in tmp_mako__math_test.do.txt to html
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
output in math_test.html
running preprocess -DFORMAT=sphinx -DDEVICE=screen  math_test.do.txt > tmp_preprocess__math_test.do.txt
running mako on tmp_preprocess__math_test.do.txt to make tmp_mako__math_test.do.txt
Translating doconce text in tmp_mako__math_test.do.txt to sphinx

*** error in math equation: command
begin{align}
is not inside !bt - !et environment

.. math::

        \begin{align}
        u(t)&=e^{-at}
        \label{__eq2b}\\ 
avoided abortion because of --no-abort

*** error in math equation: command
end{align}
is not inside !bt - !et environment
        \label{__eq2b}\\ 
        v(t) - 1 &= \frac{du}{dt}
        \label{__eq3b}
        \end{align}


avoided abortion because of --no-abort

*** warning:
Not recommended for sphinx output: math environment {eqnarray}
(use equation, equation*, \[ \], or align/align*)
Not recommended for sphinx output: math environment {eqnarray*}
Not recommended for sphinx output: math environment {multline}

*** warning: found \label{...} with backslash
    (label{...} has no backslash in DocOnce syntax)
\label{__eq2b}
\label{__eq3b}
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)

*** warning: detected non-align math environment with multiple labels
    (Sphinx cannot handle this equation system - labels will be removed
    and references to them will be empty):
    label{_eq2c}
    label{_eq3c}

*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
output in math_test.rst
Making sphinx-rootdir-math
Welcome to the Sphinx 4.3.2 quickstart utility.

Please enter values for the following settings (just press Enter to
accept a default value, if one is given in brackets).

Selected root path: .

Error: an existing conf.py has been found in the selected root path.
sphinx-quickstart will not overwrite existing Sphinx projects.

> Please enter a new root path (or just Enter to exit) []: 
You have two options for placing the build directory for Sphinx output.
Either, you use a directory "_build" within the root path, or you separate
"source" and "build" directories within the root path.
> Separate source and build directories (y/n) [n]: 
The project name will occur in several places in the built documentation.
> Project name: > Author name(s): > Project release []: 
If the documents are to be written in a language other than English,
you can select a language here by its language code. Sphinx will then
translate text that it generates into that language.

For a list of supported codes, see
https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-language.
> Project language [en]: 
Creating file /app/test/sphinx-rootdir-math/conf.py.
Creating file /app/test/sphinx-rootdir-math/index.rst.
Creating file /app/test/sphinx-rootdir-math/Makefile.
Creating file /app/test/sphinx-rootdir-math/make.bat.

Finished: An initial directory structure has been created.

You should now populate your master file /app/test/sphinx-rootdir-math/index.rst and create other documentation
source files. Use the Makefile to build the docs, like so:
   make builder
where "builder" is one of the supported builders, e.g. html, latex or linkcheck.

title: How various formats can deal with LaTeX math
author: Hans Petter Langtangen
copyright: 2022, Hans Petter Langtangen
theme: classic

These Sphinx themes were found: ADCtheme, agni, agogo, alabaster, basic, basicstrap, bizstyle, bloodish, bootstrap, cbc, classic, default, epub, fenics, fenics_classic, fenics_minimal1, fenics_minimal2, haiku, jal, nature, pylons, pyramid, scipy_lectures, scrolls, slim-agogo, sphinxdoc, traditional, uio, uio2, vlinux-theme
'automake_sphinx.py' contains the steps to (re)compile the sphinx
version. You may want to edit this file, or run the steps manually,
or just run it by

  python automake_sphinx.py

Removing everything under '_build'...
Running Sphinx v4.3.2
loading translations [1.0]... not available for built-in messages
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 2 source files that are out of date
updating environment: [new config] 2 added, 0 changed, 0 removed
reading sources... [ 50%] index
reading sources... [100%] math_test

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 50%] index
writing output... [100%] math_test

generating indices... genindex done
writing additional pages... search done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 3 warnings.

The HTML pages are in _build/html.
/app/test/sphinx-rootdir-math
running make clean
running make html
Fix generated files:
genindex.html
index.html
math_test.html
search.html


google-chrome sphinx-rootdir-math/_build/html/index.html

running preprocess -DFORMAT=pandoc -DDEVICE=screen  math_test.do.txt > tmp_preprocess__math_test.do.txt
running mako on tmp_preprocess__math_test.do.txt to make tmp_mako__math_test.do.txt
Translating doconce text in tmp_mako__math_test.do.txt to pandoc
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
*** warning: latex envir \begin{alignat} does not work well.
*** warning: latex envir \begin{eqnarray*} does not work well.
*** warning: latex envir \begin{eqnarray} does not work well.
*** warning: latex envir \begin{multline} does not work well.
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
output in math_test.md
pandoc -f markdown -t html --mathjax -s -o math_test.html math_test.md
output in math_test.html
running preprocess -DFORMAT=pandoc -DDEVICE=screen  math_test.do.txt > tmp_preprocess__math_test.do.txt
running mako on tmp_preprocess__math_test.do.txt to make tmp_mako__math_test.do.txt
Translating doconce text in tmp_mako__math_test.do.txt to pandoc
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
*** warning: latex envir \begin{alignat} does not work well.
*** warning: latex envir \begin{eqnarray*} does not work well.
*** warning: latex envir \begin{eqnarray} does not work well.
*** warning: latex envir \begin{multline} does not work well.
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
output in math_test.md
pandoc -f markdown -t latex -s -o math_test.tex math_test.md
output in math_test.tex
running mako on tmp_copyright.do.txt to make tmp_mako__tmp_copyright.do.txt
mako variables: {'FORMAT': 'pdflatex', 'DEVICE': 'screen', 'COPYRIGHT': '{copyright}', 'BOOK': True}
Translating doconce text in tmp_mako__tmp_copyright.do.txt to pdflatex
found info about 1 exercises
Final all \\label\{(.+?)\}
output in tmp_copyright.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./tmp_copyright.tex
LaTeX2e <2016/02/01>
Babel <3.9q> and hyphenation patterns for 3 language(s) loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/relsize/relsize.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/setspace/setspace.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/ltablex/ltablex.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype-pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/ucs/ucs.sty
(/usr/share/texlive/texmf-dist/tex/latex/ucs/data/uni-global.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/ucs/utf8x.def))
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[2]
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[3] [4]
Chapter 2.

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Chapter 1.
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Chapter 2.
[5] (./tmp_copyright.aux)

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Chapter 1.
[3] [4]
Chapter 2.
[5] (./tmp_copyright.aux)

 *File List*
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Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
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(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)

Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use
less on input line 55.

Writing index file tmp_copyright.idx
(/usr/share/texlive/texmf-dist/tex/latex/idxlayout/idxlayout.sty
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
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LaTeX Warning: Unused global option(s):
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(./tmp_copyright.aux) (/usr/share/texmf/tex/latex/lm/t1lmr.fd)
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[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/microtype/mt-cmr.cfg)
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(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/ucs/ucsencs.def)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./tmp_copyright.out) (./tmp_copyright.out)
ABD: EverySelectfont initializing macros (./newcommands_bfmath.tex)
(./newcommands_replace.tex) (/usr/share/texmf/tex/latex/lm/ot1lmr.fd)
(/usr/share/texmf/tex/latex/lm/omllmm.fd)
(/usr/share/texmf/tex/latex/lm/omslmsy.fd)
(/usr/share/texmf/tex/latex/lm/omxlmex.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/mt-msa.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/mt-msb.cfg)
(/usr/share/texmf/tex/latex/lm/t1lmtt.fd)
(/usr/share/texmf/tex/latex/lm/omslmr.fd) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] (./tmp_copyright.toc) [2]
Chapter 1.
[3] [4]
Chapter 2.
[5] (./tmp_copyright.aux)

 *File List*
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 ltxcmds.sty    2011/11/09 v1.22 LaTeX kernel commands for general use (HO)
setspace.sty    2011/12/19 v6.7a set line spacing
 amsmath.sty    2016/03/03 v2.15a AMS math features
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ifluatex.sty    2010/03/01 v1.3 Provides the ifluatex switch (HO)
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etexcmds.sty    2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO)
kvsetkeys.sty    2012/04/25 v1.16 Key value parser (HO)
kvdefinekeys.sty    2011/04/07 v1.3 Define keys (HO)
pdftexcmds.sty    2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO)
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uniquecounter.sty    2011/01/30 v1.2 Provide unlimited unique counter (HO)
letltxmacro.sty    2010/09/02 v1.4 Let assignment for LaTeX macros (HO)
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xcolor-patch.sty    2011/01/30 xcolor patch
atveryend.sty    2011/06/30 v1.8 Hooks at the very end of document (HO)
atbegshi.sty    2011/10/05 v1.16 At begin shipout hook (HO)
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rerunfilecheck.sty    2011/04/15 v1.7 Rerun checks for auxiliary files (HO)
fancyhdr.sty    
idxlayout.sty    2012/03/30 v0.4d Configurable index layout
etoolbox.sty    2015/08/02 v2.2a e-TeX tools for LaTeX (JAW)
multicol.sty    2015/08/19 v1.8n multicolumn formatting (FMi)
tocbibind.sty    2010/10/13 v1.5k extra ToC listings
ragged2e.sty    2009/05/21 v2.1 ragged2e Package (MS)
everysel.sty    2011/10/28 v1.2 EverySelectfont Package (MS)
   t1lmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
supp-pdf.mkii
  mt-cmr.cfg    2013/05/19 v2.2 microtype config. file: Computer Modern Roman (
RS)
epstopdf-base.sty    2010/02/09 v2.5 Base part for package epstopdf
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epstopdf-sys.cfg    2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Live
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 nameref.sty    2012/10/27 v2.43 Cross-referencing by name of section
gettitlestring.sty    2010/12/03 v1.4 Cleanup title references (HO)
tmp_copyright.out
tmp_copyright.out
newcommands_bfmath.tex
newcommands_replace.tex
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  t1lmtt.fd    2009/10/30 v1.6 Font defs for Latin Modern
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 ***********

 ){/usr/share/texmf/fonts/enc/dvips/lm/lm-rm.enc}{/usr/share/texmf/fonts/enc/dv
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hare/texmf/fonts/enc/dvips/lm/lm-ec.enc}</usr/share/texmf/fonts/type1/public/lm
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0.pfb></usr/share/texmf/fonts/type1/public/lm/lmr6.pfb></usr/share/texmf/fonts/
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Output written on tmp_copyright.pdf (5 pages, 196484 bytes).
Transcript written on tmp_copyright.log.
running mako on tmp_copyright.do.txt to make tmp_mako__tmp_copyright.do.txt
mako variables: {'FORMAT': 'pdflatex', 'DEVICE': 'screen', 'COPYRIGHT': '{copyright|CC BY-NC}', 'BOOK': True}
Translating doconce text in tmp_mako__tmp_copyright.do.txt to pdflatex
found info about 1 exercises
Final all \\label\{(.+?)\}
output in tmp_copyright.tex
replacing Released under by \\ Released under in tmp_copyright.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./tmp_copyright.tex
LaTeX2e <2016/02/01>
Babel <3.9q> and hyphenation patterns for 3 language(s) loaded.
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For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
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(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/ltablex/ltablex.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype-pdftex.def)
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(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
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(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
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(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
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(/usr/share/texmf/tex/latex/lm/lmodern.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
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Package hyperref Message: Driver (autodetected): hpdftex.

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(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)

Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use
less on input line 55.

Writing index file tmp_copyright.idx
(/usr/share/texlive/texmf-dist/tex/latex/idxlayout/idxlayout.sty
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
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LaTeX Warning: Unused global option(s):
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[Loading MPS to PDF converter (version 2006.09.02).]
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(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/ucs/ucsencs.def)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./tmp_copyright.out) (./tmp_copyright.out)
ABD: EverySelectfont initializing macros (./newcommands_bfmath.tex)
(./newcommands_replace.tex) (/usr/share/texmf/tex/latex/lm/ot1lmr.fd)
(/usr/share/texmf/tex/latex/lm/omllmm.fd)
(/usr/share/texmf/tex/latex/lm/omslmsy.fd)
(/usr/share/texmf/tex/latex/lm/omxlmex.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/mt-msa.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/mt-msb.cfg)
(/usr/share/texmf/tex/latex/lm/t1lmtt.fd)
(/usr/share/texmf/tex/latex/lm/omslmr.fd) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] (./tmp_copyright.toc) [2]
Chapter 1.
[3] [4]
Chapter 2.
[5] (./tmp_copyright.aux)

 *File List*
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    bk10.clo    2014/09/29 v1.4h Standard LaTeX file (size option)
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   color.cfg    2007/01/18 v1.5 color configuration of teTeX/TeXLive
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infwarerr.sty    2010/04/08 v1.3 Providing info/warning/error messages (HO)
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amsfonts.sty    2013/01/14 v3.01 Basic AMSFonts support
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longtable.sty    2014/10/28 v4.11 Multi-page Table package (DPC)
tabularx.sty    2014/10/28 v2.10 `tabularx' package (DPC)
microtype.sty    2013/05/23 v2.5a Micro-typographical refinements (RS)
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microtype-pdftex.def    2013/05/23 v2.5a Definitions specific to pdftex (RS)
microtype.cfg    2013/05/23 v2.5a microtype main configuration file (RS)
graphicx.sty    2014/10/28 v1.0g Enhanced LaTeX Graphics (DPC,SPQR)
graphics.sty    2016/01/03 v1.0q Standard LaTeX Graphics (DPC,SPQR)
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     ucs.sty    2013/05/11 v2.2 UCS: Unicode input support
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ifluatex.sty    2010/03/01 v1.3 Provides the ifluatex switch (HO)
  ifvtex.sty    2010/03/01 v1.5 Detect VTeX and its facilities (HO)
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uniquecounter.sty    2011/01/30 v1.2 Provide unlimited unique counter (HO)
letltxmacro.sty    2010/09/02 v1.4 Let assignment for LaTeX macros (HO)
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xcolor-patch.sty    2011/01/30 xcolor patch
atveryend.sty    2011/06/30 v1.8 Hooks at the very end of document (HO)
atbegshi.sty    2011/10/05 v1.16 At begin shipout hook (HO)
refcount.sty    2011/10/16 v3.4 Data extraction from label references (HO)
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kvoptions.sty    2011/06/30 v3.11 Key value format for package options (HO)
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Chapter 1.
[3] [4]
Chapter 2.
[5] (./tmp_copyright.aux)

 *File List*
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 ***********

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(/usr/share/texmf/tex/latex/lm/omslmr.fd) [1{/var/lib/texmf/fonts/map/pdftex/up
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Chapter 1.
[3] [4]
Chapter 2.
[5] (./tmp_copyright.aux)

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Output written on tmp_copyright.pdf (5 pages, 196008 bytes).
Transcript written on tmp_copyright.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
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Chapter 1.
[3] [4]
Chapter 2.
[5] (./tmp_copyright.aux)

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RS)
epstopdf-base.sty    2010/02/09 v2.5 Base part for package epstopdf
  grfext.sty    2010/08/19 v1.1 Manage graphics extensions (HO)
epstopdf-sys.cfg    2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Live
 ucsencs.def    2011/01/21 Fixes to fontencodings LGR, T3
 nameref.sty    2012/10/27 v2.43 Cross-referencing by name of section
gettitlestring.sty    2010/12/03 v1.4 Cleanup title references (HO)
tmp_copyright.out
tmp_copyright.out
newcommands_bfmath.tex
newcommands_replace.tex
  ot1lmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
  omllmm.fd    2009/10/30 v1.6 Font defs for Latin Modern
 omslmsy.fd    2009/10/30 v1.6 Font defs for Latin Modern
 omxlmex.fd    2009/10/30 v1.6 Font defs for Latin Modern
    umsa.fd    2013/01/14 v3.01 AMS symbols A
  mt-msa.cfg    2006/02/04 v1.1 microtype config. file: AMS symbols (a) (RS)
    umsb.fd    2013/01/14 v3.01 AMS symbols B
  mt-msb.cfg    2005/06/01 v1.0 microtype config. file: AMS symbols (b) (RS)
  t1lmtt.fd    2009/10/30 v1.6 Font defs for Latin Modern
  omslmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
 ***********

 ){/usr/share/texmf/fonts/enc/dvips/lm/lm-rm.enc}{/usr/share/texmf/fonts/enc/dv
ips/lm/lm-mathit.enc}{/usr/share/texmf/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/s
hare/texmf/fonts/enc/dvips/lm/lm-ec.enc}</usr/share/texmf/fonts/type1/public/lm
/lmbx10.pfb></usr/share/texmf/fonts/type1/public/lm/lmbx12.pfb></usr/share/texm
f/fonts/type1/public/lm/lmmi10.pfb></usr/share/texmf/fonts/type1/public/lm/lmr1
0.pfb></usr/share/texmf/fonts/type1/public/lm/lmr6.pfb></usr/share/texmf/fonts/
type1/public/lm/lmr7.pfb></usr/share/texmf/fonts/type1/public/lm/lmr8.pfb></usr
/share/texmf/fonts/type1/public/lm/lmr9.pfb></usr/share/texmf/fonts/type1/publi
c/lm/lmsy8.pfb></usr/share/texmf/fonts/type1/public/lm/lmtk10.pfb>
Output written on tmp_copyright.pdf (5 pages, 196008 bytes).
Transcript written on tmp_copyright.log.
running mako on tmp_copyright.do.txt to make tmp_mako__tmp_copyright.do.txt
mako variables: {'FORMAT': 'sphinx', 'DEVICE': 'screen', 'COPYRIGHT': '{copyright}', 'BOOK': True}
Translating doconce text in tmp_mako__tmp_copyright.do.txt to sphinx
*** error: heading "===== Exercise: My problem =====" is subsection and
    comes after chapter, but will be treated as section in sphinx
found info about 1 exercises
*** warning: new !split inserted (override all existing !split)
    before every ========= heading =========
    because this strategy gives a well-functioning
    table of contents in Sphinx
    (use --sphinx_keep_splits to enforce your own !split commands)
output in tmp_copyright.rst
tmp_copyright split into
._tmp_copyright000.rst ._tmp_copyright001.rst ._tmp_copyright002.rst
Making tmp_sphinx-rootdir1
Welcome to the Sphinx 4.3.2 quickstart utility.

Please enter values for the following settings (just press Enter to
accept a default value, if one is given in brackets).

Selected root path: .

Error: an existing conf.py has been found in the selected root path.
sphinx-quickstart will not overwrite existing Sphinx projects.

> Please enter a new root path (or just Enter to exit) []: 
You have two options for placing the build directory for Sphinx output.
Either, you use a directory "_build" within the root path, or you separate
"source" and "build" directories within the root path.
> Separate source and build directories (y/n) [n]: 
The project name will occur in several places in the built documentation.
> Project name: > Author name(s): > Project release []: 
If the documents are to be written in a language other than English,
you can select a language here by its language code. Sphinx will then
translate text that it generates into that language.

For a list of supported codes, see
https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-language.
> Project language [en]: 
Creating file /app/test/tmp_sphinx-rootdir1/conf.py.
Creating file /app/test/tmp_sphinx-rootdir1/index.rst.
Creating file /app/test/tmp_sphinx-rootdir1/Makefile.
Creating file /app/test/tmp_sphinx-rootdir1/make.bat.

Finished: An initial directory structure has been created.

You should now populate your master file /app/test/tmp_sphinx-rootdir1/index.rst and create other documentation
source files. Use the Makefile to build the docs, like so:
   make builder
where "builder" is one of the supported builders, e.g. html, latex or linkcheck.

title: Test
author: Hans Petter Langtangen, Kaare Dump and Joe Doe
copyright: 2022, Hans Petter Langtangen, Simula, Kaare Dump

Made with DocOnce
theme: alabaster

These Sphinx themes were found: ADCtheme, agni, agogo, alabaster, basic, basicstrap, bizstyle, bloodish, bootstrap, cbc, classic, default, epub, fenics, fenics_classic, fenics_minimal1, fenics_minimal2, haiku, jal, nature, pylons, pyramid, scipy_lectures, scrolls, slim-agogo, sphinxdoc, traditional, uio, uio2, vlinux-theme
'automake_sphinx.py' contains the steps to (re)compile the sphinx
version. You may want to edit this file, or run the steps manually,
or just run it by

  python automake_sphinx.py

Removing everything under '_build'...
Running Sphinx v4.3.2
loading translations [1.0]... not available for built-in messages
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 4 source files that are out of date
updating environment: [new config] 4 added, 0 changed, 0 removed
reading sources... [ 25%] ._tmp_copyright000
reading sources... [ 50%] ._tmp_copyright001
reading sources... [ 75%] ._tmp_copyright002
reading sources... [100%] index

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 25%] ._tmp_copyright000
writing output... [ 50%] ._tmp_copyright001
writing output... [ 75%] ._tmp_copyright002
writing output... [100%] index

generating indices... genindex done
writing additional pages... search done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 1 warning.

The HTML pages are in _build/html.
/app/test/tmp_sphinx-rootdir1
running make clean
running make html
Fix generated files:
genindex.html
index.html
search.html
._tmp_copyright000.html
._tmp_copyright001.html
._tmp_copyright002.html


google-chrome tmp_sphinx-rootdir1/_build/html/index.html

running mako on tmp_copyright.do.txt to make tmp_mako__tmp_copyright.do.txt
mako variables: {'FORMAT': 'sphinx', 'DEVICE': 'screen', 'COPYRIGHT': '{copyright|CC BY}', 'BOOK': True}
Translating doconce text in tmp_mako__tmp_copyright.do.txt to sphinx
*** error: heading "===== Exercise: My problem =====" is subsection and
    comes after chapter, but will be treated as section in sphinx
found info about 1 exercises
*** warning: new !split inserted (override all existing !split)
    before every ========= heading =========
    because this strategy gives a well-functioning
    table of contents in Sphinx
    (use --sphinx_keep_splits to enforce your own !split commands)
output in tmp_copyright.rst
tmp_copyright split into
._tmp_copyright000.rst ._tmp_copyright001.rst ._tmp_copyright002.rst
Making tmp_sphinx-rootdir2
Welcome to the Sphinx 4.3.2 quickstart utility.

Please enter values for the following settings (just press Enter to
accept a default value, if one is given in brackets).

Selected root path: .

Error: an existing conf.py has been found in the selected root path.
sphinx-quickstart will not overwrite existing Sphinx projects.

> Please enter a new root path (or just Enter to exit) []: 
You have two options for placing the build directory for Sphinx output.
Either, you use a directory "_build" within the root path, or you separate
"source" and "build" directories within the root path.
> Separate source and build directories (y/n) [n]: 
The project name will occur in several places in the built documentation.
> Project name: > Author name(s): > Project release []: 
If the documents are to be written in a language other than English,
you can select a language here by its language code. Sphinx will then
translate text that it generates into that language.

For a list of supported codes, see
https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-language.
> Project language [en]: 
Creating file /app/test/tmp_sphinx-rootdir2/conf.py.
Creating file /app/test/tmp_sphinx-rootdir2/index.rst.
Creating file /app/test/tmp_sphinx-rootdir2/Makefile.
Creating file /app/test/tmp_sphinx-rootdir2/make.bat.

Finished: An initial directory structure has been created.

You should now populate your master file /app/test/tmp_sphinx-rootdir2/index.rst and create other documentation
source files. Use the Makefile to build the docs, like so:
   make builder
where "builder" is one of the supported builders, e.g. html, latex or linkcheck.

title: Test
author: Hans Petter Langtangen, Kaare Dump and Joe Doe
copyright: 2022, Hans Petter Langtangen, Simula, Kaare Dump. Released under CC Attribution 4.0 license

Made with DocOnce
theme: alabaster

These Sphinx themes were found: ADCtheme, agni, agogo, alabaster, basic, basicstrap, bizstyle, bloodish, bootstrap, cbc, classic, default, epub, fenics, fenics_classic, fenics_minimal1, fenics_minimal2, haiku, jal, nature, pylons, pyramid, scipy_lectures, scrolls, slim-agogo, sphinxdoc, traditional, uio, uio2, vlinux-theme
'automake_sphinx.py' contains the steps to (re)compile the sphinx
version. You may want to edit this file, or run the steps manually,
or just run it by

  python automake_sphinx.py

Removing everything under '_build'...
Running Sphinx v4.3.2
loading translations [1.0]... not available for built-in messages
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 4 source files that are out of date
updating environment: [new config] 4 added, 0 changed, 0 removed
reading sources... [ 25%] ._tmp_copyright000
reading sources... [ 50%] ._tmp_copyright001
reading sources... [ 75%] ._tmp_copyright002
reading sources... [100%] index

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 25%] ._tmp_copyright000
writing output... [ 50%] ._tmp_copyright001
writing output... [ 75%] ._tmp_copyright002
writing output... [100%] index

generating indices... genindex done
writing additional pages... search done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 1 warning.

The HTML pages are in _build/html.
/app/test/tmp_sphinx-rootdir2
running make clean
running make html
Fix generated files:
genindex.html
index.html
search.html
._tmp_copyright000.html
._tmp_copyright001.html
._tmp_copyright002.html


google-chrome tmp_sphinx-rootdir2/_build/html/index.html

running mako on tmp_copyright.do.txt to make tmp_mako__tmp_copyright.do.txt
mako variables: {'FORMAT': 'sphinx', 'DEVICE': 'screen', 'COPYRIGHT': '{copyright|CC BY-NC}', 'BOOK': True}
Translating doconce text in tmp_mako__tmp_copyright.do.txt to sphinx
*** error: heading "===== Exercise: My problem =====" is subsection and
    comes after chapter, but will be treated as section in sphinx
found info about 1 exercises
*** warning: new !split inserted (override all existing !split)
    before every ========= heading =========
    because this strategy gives a well-functioning
    table of contents in Sphinx
    (use --sphinx_keep_splits to enforce your own !split commands)
output in tmp_copyright.rst
tmp_copyright split into
._tmp_copyright000.rst ._tmp_copyright001.rst ._tmp_copyright002.rst
Making tmp_sphinx-rootdir3
Welcome to the Sphinx 4.3.2 quickstart utility.

Please enter values for the following settings (just press Enter to
accept a default value, if one is given in brackets).

Selected root path: .

Error: an existing conf.py has been found in the selected root path.
sphinx-quickstart will not overwrite existing Sphinx projects.

> Please enter a new root path (or just Enter to exit) []: 
You have two options for placing the build directory for Sphinx output.
Either, you use a directory "_build" within the root path, or you separate
"source" and "build" directories within the root path.
> Separate source and build directories (y/n) [n]: 
The project name will occur in several places in the built documentation.
> Project name: > Author name(s): > Project release []: 
If the documents are to be written in a language other than English,
you can select a language here by its language code. Sphinx will then
translate text that it generates into that language.

For a list of supported codes, see
https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-language.
> Project language [en]: 
Creating file /app/test/tmp_sphinx-rootdir3/conf.py.
Creating file /app/test/tmp_sphinx-rootdir3/index.rst.
Creating file /app/test/tmp_sphinx-rootdir3/Makefile.
Creating file /app/test/tmp_sphinx-rootdir3/make.bat.

Finished: An initial directory structure has been created.

You should now populate your master file /app/test/tmp_sphinx-rootdir3/index.rst and create other documentation
source files. Use the Makefile to build the docs, like so:
   make builder
where "builder" is one of the supported builders, e.g. html, latex or linkcheck.

title: Test
author: Hans Petter Langtangen, Kaare Dump and Joe Doe
copyright: 2022, Hans Petter Langtangen, Simula, Kaare Dump. Released under CC Attribution-NonCommercial 4.0 license

Made with DocOnce
theme: alabaster

These Sphinx themes were found: ADCtheme, agni, agogo, alabaster, basic, basicstrap, bizstyle, bloodish, bootstrap, cbc, classic, default, epub, fenics, fenics_classic, fenics_minimal1, fenics_minimal2, haiku, jal, nature, pylons, pyramid, scipy_lectures, scrolls, slim-agogo, sphinxdoc, traditional, uio, uio2, vlinux-theme
'automake_sphinx.py' contains the steps to (re)compile the sphinx
version. You may want to edit this file, or run the steps manually,
or just run it by

  python automake_sphinx.py

Removing everything under '_build'...
Running Sphinx v4.3.2
loading translations [1.0]... not available for built-in messages
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 4 source files that are out of date
updating environment: [new config] 4 added, 0 changed, 0 removed
reading sources... [ 25%] ._tmp_copyright000
reading sources... [ 50%] ._tmp_copyright001
reading sources... [ 75%] ._tmp_copyright002
reading sources... [100%] index

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 25%] ._tmp_copyright000
writing output... [ 50%] ._tmp_copyright001
writing output... [ 75%] ._tmp_copyright002
writing output... [100%] index

generating indices... genindex done
writing additional pages... search done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 1 warning.

The HTML pages are in _build/html.
/app/test/tmp_sphinx-rootdir3
running make clean
running make html
Fix generated files:
genindex.html
index.html
search.html
._tmp_copyright000.html
._tmp_copyright001.html
._tmp_copyright002.html


google-chrome tmp_sphinx-rootdir3/_build/html/index.html

running mako on tmp_copyright.do.txt to make tmp_mako__tmp_copyright.do.txt
mako variables: {'FORMAT': 'sphinx', 'DEVICE': 'screen', 'COPYRIGHT': '{copyright|Released under the MIT license.}', 'BOOK': True}
Translating doconce text in tmp_mako__tmp_copyright.do.txt to sphinx
*** error: heading "===== Exercise: My problem =====" is subsection and
    comes after chapter, but will be treated as section in sphinx
found info about 1 exercises
*** warning: new !split inserted (override all existing !split)
    before every ========= heading =========
    because this strategy gives a well-functioning
    table of contents in Sphinx
    (use --sphinx_keep_splits to enforce your own !split commands)
output in tmp_copyright.rst
tmp_copyright split into
._tmp_copyright000.rst ._tmp_copyright001.rst ._tmp_copyright002.rst
Making tmp_sphinx-rootdir4
Welcome to the Sphinx 4.3.2 quickstart utility.

Please enter values for the following settings (just press Enter to
accept a default value, if one is given in brackets).

Selected root path: .

Error: an existing conf.py has been found in the selected root path.
sphinx-quickstart will not overwrite existing Sphinx projects.

> Please enter a new root path (or just Enter to exit) []: 
You have two options for placing the build directory for Sphinx output.
Either, you use a directory "_build" within the root path, or you separate
"source" and "build" directories within the root path.
> Separate source and build directories (y/n) [n]: 
The project name will occur in several places in the built documentation.
> Project name: > Author name(s): > Project release []: 
If the documents are to be written in a language other than English,
you can select a language here by its language code. Sphinx will then
translate text that it generates into that language.

For a list of supported codes, see
https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-language.
> Project language [en]: 
Creating file /app/test/tmp_sphinx-rootdir4/conf.py.
Creating file /app/test/tmp_sphinx-rootdir4/index.rst.
Creating file /app/test/tmp_sphinx-rootdir4/Makefile.
Creating file /app/test/tmp_sphinx-rootdir4/make.bat.

Finished: An initial directory structure has been created.

You should now populate your master file /app/test/tmp_sphinx-rootdir4/index.rst and create other documentation
source files. Use the Makefile to build the docs, like so:
   make builder
where "builder" is one of the supported builders, e.g. html, latex or linkcheck.

title: Test
author: Hans Petter Langtangen, Kaare Dump and Joe Doe
copyright: 2022, Hans Petter Langtangen, Simula, Kaare Dump. Released under the MIT license.

Made with DocOnce
theme: alabaster

These Sphinx themes were found: ADCtheme, agni, agogo, alabaster, basic, basicstrap, bizstyle, bloodish, bootstrap, cbc, classic, default, epub, fenics, fenics_classic, fenics_minimal1, fenics_minimal2, haiku, jal, nature, pylons, pyramid, scipy_lectures, scrolls, slim-agogo, sphinxdoc, traditional, uio, uio2, vlinux-theme
'automake_sphinx.py' contains the steps to (re)compile the sphinx
version. You may want to edit this file, or run the steps manually,
or just run it by

  python automake_sphinx.py

Removing everything under '_build'...
Running Sphinx v4.3.2
loading translations [1.0]... not available for built-in messages
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 4 source files that are out of date
updating environment: [new config] 4 added, 0 changed, 0 removed
reading sources... [ 25%] ._tmp_copyright000
reading sources... [ 50%] ._tmp_copyright001
reading sources... [ 75%] ._tmp_copyright002
reading sources... [100%] index

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 25%] ._tmp_copyright000
writing output... [ 50%] ._tmp_copyright001
writing output... [ 75%] ._tmp_copyright002
writing output... [100%] index

generating indices... genindex done
writing additional pages... search done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 1 warning.

The HTML pages are in _build/html.
/app/test/tmp_sphinx-rootdir4
running make clean
running make html
Fix generated files:
genindex.html
index.html
search.html
._tmp_copyright000.html
._tmp_copyright001.html
._tmp_copyright002.html


google-chrome tmp_sphinx-rootdir4/_build/html/index.html

running mako on tmp_copyright.do.txt to make tmp_mako__tmp_copyright.do.txt
mako variables: {'FORMAT': 'html', 'DEVICE': 'screen', 'COPYRIGHT': '{copyright}', 'BOOK': True}
Translating doconce text in tmp_mako__tmp_copyright.do.txt to html
found info about 1 exercises
*** warning: --html_output is obsolete. Use the --output option

output in tmp_copyright1.html
tmp_copyright1.html now links to the generated files
._tmp_copyright1000.html, ._tmp_copyright1001.html, ._tmp_copyright1002.html
running mako on tmp_copyright.do.txt to make tmp_mako__tmp_copyright.do.txt
mako variables: {'FORMAT': 'html', 'DEVICE': 'screen', 'COPYRIGHT': '{copyright|CC BY}', 'BOOK': True}
Translating doconce text in tmp_mako__tmp_copyright.do.txt to html
found info about 1 exercises
*** warning: --html_output is obsolete. Use the --output option

output in tmp_copyright2.html
tmp_copyright2.html now links to the generated files
._tmp_copyright2000.html, ._tmp_copyright2001.html, ._tmp_copyright2002.html
running mako on tmp_copyright.do.txt to make tmp_mako__tmp_copyright.do.txt
mako variables: {'FORMAT': 'html', 'DEVICE': 'screen', 'COPYRIGHT': '{copyright|CC BY-NC}', 'BOOK': True}
Translating doconce text in tmp_mako__tmp_copyright.do.txt to html
found info about 1 exercises
*** warning: --html_output is obsolete. Use the --output option

output in tmp_copyright3.html
tmp_copyright3.html now links to the generated files
._tmp_copyright3000.html, ._tmp_copyright3001.html, ._tmp_copyright3002.html
running mako on tmp_copyright.do.txt to make tmp_mako__tmp_copyright.do.txt
mako variables: {'FORMAT': 'html', 'DEVICE': 'screen', 'COPYRIGHT': '{copyright|Released under the MIT license.}', 'BOOK': True}
Translating doconce text in tmp_mako__tmp_copyright.do.txt to html
found info about 1 exercises
*** warning: --html_output is obsolete. Use the --output option

output in tmp_copyright4.html
tmp_copyright4.html now links to the generated files
._tmp_copyright4000.html, ._tmp_copyright4001.html, ._tmp_copyright4002.html
doconce format pdflatex tmp_copyright COPYRIGHT="{copyright}" BOOK=True --cite_doconce --latex_code_style=vrb
doconce format pdflatex tmp_copyright COPYRIGHT="{copyright}" BOOK=True --cite_doconce --latex_code_style=vrb
doconce replace "Released under" "\\\\ Released under" tmp_copyright.tex
pdflatex tmp_copyright
pdflatex tmp_copyright
doconce format pdflatex tmp_copyright COPYRIGHT="{copyright|CC BY}" BOOK=True --cite_doconce --latex_code_style=vrb
doconce format pdflatex tmp_copyright COPYRIGHT="{copyright|CC BY}" BOOK=True --cite_doconce --latex_code_style=vrb
doconce replace "Released under" "\\\\ Released under" tmp_copyright.tex
pdflatex tmp_copyright
pdflatex tmp_copyright
doconce format pdflatex tmp_copyright COPYRIGHT="{copyright|CC BY-NC}" BOOK=True --cite_doconce --latex_code_style=vrb
doconce format pdflatex tmp_copyright COPYRIGHT="{copyright|CC BY-NC}" BOOK=True --cite_doconce --latex_code_style=vrb
doconce replace "Released under" "\\\\ Released under" tmp_copyright.tex
pdflatex tmp_copyright
pdflatex tmp_copyright
doconce format pdflatex tmp_copyright COPYRIGHT="{copyright|Released under the MIT license.}" BOOK=True --cite_doconce --latex_code_style=vrb
doconce format pdflatex tmp_copyright COPYRIGHT="{copyright|Released under the MIT license.}" BOOK=True --cite_doconce --latex_code_style=vrb
doconce replace "Released under" "\\\\ Released under" tmp_copyright.tex
pdflatex tmp_copyright
pdflatex tmp_copyright
doconce format sphinx tmp_copyright COPYRIGHT="{copyright}" BOOK=True --cite_doconce
doconce format sphinx tmp_copyright COPYRIGHT="{copyright}" BOOK=True --cite_doconce
doconce split_rst tmp_copyright.rst
doconce sphinx_dir theme=alabaster dirname=tmp_sphinx-rootdir1 tmp_copyright
python automake_sphinx.py
doconce format sphinx tmp_copyright COPYRIGHT="{copyright|CC BY}" BOOK=True --cite_doconce
doconce format sphinx tmp_copyright COPYRIGHT="{copyright|CC BY}" BOOK=True --cite_doconce
doconce split_rst tmp_copyright.rst
doconce sphinx_dir theme=alabaster dirname=tmp_sphinx-rootdir2 tmp_copyright
python automake_sphinx.py
doconce format sphinx tmp_copyright COPYRIGHT="{copyright|CC BY-NC}" BOOK=True --cite_doconce
doconce format sphinx tmp_copyright COPYRIGHT="{copyright|CC BY-NC}" BOOK=True --cite_doconce
doconce split_rst tmp_copyright.rst
doconce sphinx_dir theme=alabaster dirname=tmp_sphinx-rootdir3 tmp_copyright
python automake_sphinx.py
doconce format sphinx tmp_copyright COPYRIGHT="{copyright|Released under the MIT license.}" BOOK=True --cite_doconce
doconce format sphinx tmp_copyright COPYRIGHT="{copyright|Released under the MIT license.}" BOOK=True --cite_doconce
doconce split_rst tmp_copyright.rst
doconce sphinx_dir theme=alabaster dirname=tmp_sphinx-rootdir4 tmp_copyright
python automake_sphinx.py
doconce format html tmp_copyright COPYRIGHT="{copyright}" BOOK=True --cite_doconce --html_output=tmp_copyright1
doconce format html tmp_copyright COPYRIGHT="{copyright}" BOOK=True --cite_doconce --html_output=tmp_copyright1
doconce split_html tmp_copyright1.html
doconce format html tmp_copyright COPYRIGHT="{copyright|CC BY}" BOOK=True --cite_doconce --html_output=tmp_copyright2
doconce format html tmp_copyright COPYRIGHT="{copyright|CC BY}" BOOK=True --cite_doconce --html_output=tmp_copyright2
doconce split_html tmp_copyright2.html
doconce format html tmp_copyright COPYRIGHT="{copyright|CC BY-NC}" BOOK=True --cite_doconce --html_output=tmp_copyright3
doconce format html tmp_copyright COPYRIGHT="{copyright|CC BY-NC}" BOOK=True --cite_doconce --html_output=tmp_copyright3
doconce split_html tmp_copyright3.html
doconce format html tmp_copyright COPYRIGHT="{copyright|Released under the MIT license.}" BOOK=True --cite_doconce --html_output=tmp_copyright4
doconce format html tmp_copyright COPYRIGHT="{copyright|Released under the MIT license.}" BOOK=True --cite_doconce --html_output=tmp_copyright4
doconce split_html tmp_copyright4.html
running mako on copyright.do.txt to make tmp_mako__copyright.do.txt
mako variables: {'FORMAT': 'sphinx', 'DEVICE': 'screen', 'COPYRIGHT': '{copyright,date}', 'BOOK': False}
Translating doconce text in tmp_mako__copyright.do.txt to sphinx
found info about 1 exercises
*** warning: new !split inserted (override all existing !split)
    before every ======= heading =======
    because this strategy gives a well-functioning
    table of contents in Sphinx
    (use --sphinx_keep_splits to enforce your own !split commands)
output in copyright.rst
copyright split into
._copyright000.rst ._copyright001.rst ._copyright002.rst ._copyright003.rst
Making sphinx-rootdir
Welcome to the Sphinx 4.3.2 quickstart utility.

Please enter values for the following settings (just press Enter to
accept a default value, if one is given in brackets).

Selected root path: .

Error: an existing conf.py has been found in the selected root path.
sphinx-quickstart will not overwrite existing Sphinx projects.

> Please enter a new root path (or just Enter to exit) []: 
You have two options for placing the build directory for Sphinx output.
Either, you use a directory "_build" within the root path, or you separate
"source" and "build" directories within the root path.
> Separate source and build directories (y/n) [n]: 
The project name will occur in several places in the built documentation.
> Project name: > Author name(s): > Project release []: 
If the documents are to be written in a language other than English,
you can select a language here by its language code. Sphinx will then
translate text that it generates into that language.

For a list of supported codes, see
https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-language.
> Project language [en]: 
Creating file /app/test/sphinx-rootdir/conf.py.
Creating file /app/test/sphinx-rootdir/index.rst.
Creating file /app/test/sphinx-rootdir/Makefile.
Creating file /app/test/sphinx-rootdir/make.bat.

Finished: An initial directory structure has been created.

You should now populate your master file /app/test/sphinx-rootdir/index.rst and create other documentation
source files. Use the Makefile to build the docs, like so:
   make builder
where "builder" is one of the supported builders, e.g. html, latex or linkcheck.

title: Test
author: Hans Petter Langtangen, Kaare Dump and Joe Doe
copyright: 2022, Hans Petter Langtangen, Simula, Kaare Dump
theme: classic

'automake_sphinx.py' contains the steps to (re)compile the sphinx
version. You may want to edit this file, or run the steps manually,
or just run it by

  python automake_sphinx.py

Removing everything under '_build'...
Running Sphinx v4.3.2
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 5 source files that are out of date
updating environment: [new config] 5 added, 0 changed, 0 removed
reading sources... [ 20%] ._copyright000
reading sources... [ 40%] ._copyright001
reading sources... [ 60%] ._copyright002
reading sources... [ 80%] ._copyright003
reading sources... [100%] index

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 20%] ._copyright000
writing output... [ 40%] ._copyright001
writing output... [ 60%] ._copyright002
writing output... [ 80%] ._copyright003
writing output... [100%] index

generating indices... genindex done
writing additional pages... search done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded.

The HTML pages are in _build/html.
/app/test/sphinx-rootdir
running make clean
running make html
Fix generated files:
genindex.html
index.html
search.html
._copyright000.html
._copyright001.html
._copyright002.html
._copyright003.html


google-chrome sphinx-rootdir/_build/html/index.html

running preprocess -DFORMAT=pdflatex -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to pdflatex
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format pdflatex
Final all \\label\{(.+?)\}
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
output in admon.tex
\\\\paragraph{Hint.}\\n replaced by \paragraph{Hint.} in admon_colors1.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
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entering extended mode
(./admon_colors1.tex
LaTeX2e <2016/02/01>
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) (/usr/share/texlive/texmf-dist/tex/latex/ms/ragged2e.sty
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 *File List*
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  size10.clo    2014/09/29 v1.4h Standard LaTeX file (size option)
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   color.sty    1999/02/16
   color.cfg    2007/01/18 v1.5 color configuration of teTeX/TeXLive
  pdftex.def    2011/05/27 v0.06d Graphics/color for pdfTeX
infwarerr.sty    2010/04/08 v1.3 Providing info/warning/error messages (HO)
 ltxcmds.sty    2011/11/09 v1.22 LaTeX kernel commands for general use (HO)
setspace.sty    2011/12/19 v6.7a set line spacing
 amsmath.sty    2016/03/03 v2.15a AMS math features
 amstext.sty    2000/06/29 v2.01 AMS text
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amsfonts.sty    2013/01/14 v3.01 Basic AMSFonts support
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colortbl.sty    2012/02/13 v1.0a Color table columns (DPC)
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      bm.sty    2014/10/28 v1.1c Bold Symbol Support (DPC/FMi)
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longtable.sty    2014/10/28 v4.11 Multi-page Table package (DPC)
tabularx.sty    2014/10/28 v2.10 `tabularx' package (DPC)
microtype.sty    2013/05/23 v2.5a Micro-typographical refinements (RS)
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microtype-pdftex.def    2013/05/23 v2.5a Definitions specific to pdftex (RS)
microtype.cfg    2013/05/23 v2.5a microtype main configuration file (RS)
graphicx.sty    2014/10/28 v1.0g Enhanced LaTeX Graphics (DPC,SPQR)
graphics.sty    2016/01/03 v1.0q Standard LaTeX Graphics (DPC,SPQR)
    trig.sty    2016/01/03 v1.10 sin cos tan (DPC)
graphics.cfg    2010/04/23 v1.9 graphics configuration of TeX Live
fancybox.sty    2010/05/15 1.4
fancyvrb.sty    2008/02/07
  framed.sty    2011/10/22 v 0.96: framed or shaded text with page breaks
moreverb.sty    2008/06/03 v2.3a `more' verbatim facilities
verbatim.sty    2014/10/28 v1.5q LaTeX2e package for verbatim enhancements
listingsutf8.sty    2011/11/10 v1.2 Allow UTF-8 in listings input (HO)
listings.sty    2015/06/04 1.6 (Carsten Heinz)
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listings.cfg    2015/06/04 1.6 listings configuration
pdftexcmds.sty    2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO)
ifluatex.sty    2010/03/01 v1.3 Provides the ifluatex switch (HO)
   ifpdf.sty    2011/01/30 v2.3 Provides the ifpdf switch (HO)
stringenc.sty    2011/12/02 v1.10 Convert strings between diff. encodings (HO)
pdfescape.sty    2011/11/25 v1.13 Implements pdfTeX's escape features (HO)
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     ucs.sty    2013/05/11 v2.2 UCS: Unicode input support
uni-global.def    2013/05/13 UCS: Unicode global data
inputenc.sty    2015/03/17 v1.2c Input encoding file
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hyperref.sty    2012/11/06 v6.83m Hypertext links for LaTeX
hobsub-hyperref.sty    2012/05/28 v1.13 Bundle oberdiek, subset hyperref (HO)
hobsub-generic.sty    2012/05/28 v1.13 Bundle oberdiek, subset generic (HO)
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  ifvtex.sty    2010/03/01 v1.5 Detect VTeX and its facilities (HO)
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etexcmds.sty    2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO)
kvsetkeys.sty    2012/04/25 v1.16 Key value parser (HO)
kvdefinekeys.sty    2011/04/07 v1.3 Define keys (HO)
bigintcalc.sty    2012/04/08 v1.3 Expandable calculations on big integers (HO)
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uniquecounter.sty    2011/01/30 v1.2 Provide unlimited unique counter (HO)
letltxmacro.sty    2010/09/02 v1.4 Let assignment for LaTeX macros (HO)
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xcolor-patch.sty    2011/01/30 xcolor patch
atveryend.sty    2011/06/30 v1.8 Hooks at the very end of document (HO)
atbegshi.sty    2011/10/05 v1.16 At begin shipout hook (HO)
refcount.sty    2011/10/16 v3.4 Data extraction from label references (HO)
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kvoptions.sty    2011/06/30 v3.11 Key value format for package options (HO)
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hyperref.cfg    2002/06/06 v1.2 hyperref configuration of TeXLive
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rerunfilecheck.sty    2011/04/15 v1.7 Rerun checks for auxiliary files (HO)
placeins.sty    2005/04/18  v 2.2
fancyhdr.sty    
idxlayout.sty    2012/03/30 v0.4d Configurable index layout
etoolbox.sty    2015/08/02 v2.2a e-TeX tools for LaTeX (JAW)
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epstopdf-base.sty    2010/02/09 v2.5 Base part for package epstopdf
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latex_figs/warning.pdf
latex_figs/notice.pdf
testfigs/wave1D.png
latex_figs/summary.pdf
 ***********

 )
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Output written on admon_grayicon.pdf (6 pages, 322686 bytes).
Transcript written on admon_grayicon.log.
admon=grayicon
latex_figs:
small_gray_notice.pdf
small_gray_question2.pdf
small_gray_summary.pdf
small_gray_warning.pdf
running preprocess -DFORMAT=pdflatex -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to pdflatex
figure file testfigs/wave1D:
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Final all \\label\{(.+?)\}
*** warning: wrong text size "illegal-size" specified in notice environment!
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  framed.sty    2011/10/22 v 0.96: framed or shaded text with page breaks
moreverb.sty    2008/06/03 v2.3a `more' verbatim facilities
verbatim.sty    2014/10/28 v1.5q LaTeX2e package for verbatim enhancements
listingsutf8.sty    2011/11/10 v1.2 Allow UTF-8 in listings input (HO)
listings.sty    2015/06/04 1.6 (Carsten Heinz)
 lstmisc.sty    2015/06/04 1.6 (Carsten Heinz)
listings.cfg    2015/06/04 1.6 listings configuration
pdftexcmds.sty    2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO)
ifluatex.sty    2010/03/01 v1.3 Provides the ifluatex switch (HO)
   ifpdf.sty    2011/01/30 v2.3 Provides the ifpdf switch (HO)
stringenc.sty    2011/12/02 v1.10 Convert strings between diff. encodings (HO)
pdfescape.sty    2011/11/25 v1.13 Implements pdfTeX's escape features (HO)
    calc.sty    2014/10/28 v4.3 Infix arithmetic (KKT,FJ)
 fontenc.sty
   t1enc.def    2005/09/27 v1.99g Standard LaTeX file
     ucs.sty    2013/05/11 v2.2 UCS: Unicode input support
uni-global.def    2013/05/13 UCS: Unicode global data
inputenc.sty    2015/03/17 v1.2c Input encoding file
   utf8x.def    2004/10/17 UCS: Input encoding UTF-8
 lmodern.sty    2009/10/30 v1.6 Latin Modern Fonts
hyperref.sty    2012/11/06 v6.83m Hypertext links for LaTeX
hobsub-hyperref.sty    2012/05/28 v1.13 Bundle oberdiek, subset hyperref (HO)
hobsub-generic.sty    2012/05/28 v1.13 Bundle oberdiek, subset generic (HO)
  hobsub.sty    2012/05/28 v1.13 Construct package bundles (HO)
  ifvtex.sty    2010/03/01 v1.5 Detect VTeX and its facilities (HO)
 intcalc.sty    2007/09/27 v1.1 Expandable calculations with integers (HO)
etexcmds.sty    2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO)
kvsetkeys.sty    2012/04/25 v1.16 Key value parser (HO)
kvdefinekeys.sty    2011/04/07 v1.3 Define keys (HO)
bigintcalc.sty    2012/04/08 v1.3 Expandable calculations on big integers (HO)
  bitset.sty    2011/01/30 v1.1 Handle bit-vector datatype (HO)
uniquecounter.sty    2011/01/30 v1.2 Provide unlimited unique counter (HO)
letltxmacro.sty    2010/09/02 v1.4 Let assignment for LaTeX macros (HO)
 hopatch.sty    2012/05/28 v1.2 Wrapper for package hooks (HO)
xcolor-patch.sty    2011/01/30 xcolor patch
atveryend.sty    2011/06/30 v1.8 Hooks at the very end of document (HO)
atbegshi.sty    2011/10/05 v1.16 At begin shipout hook (HO)
refcount.sty    2011/10/16 v3.4 Data extraction from label references (HO)
 hycolor.sty    2011/01/30 v1.7 Color options for hyperref/bookmark (HO)
 ifxetex.sty    2010/09/12 v0.6 Provides ifxetex conditional
 auxhook.sty    2011/03/04 v1.3 Hooks for auxiliary files (HO)
kvoptions.sty    2011/06/30 v3.11 Key value format for package options (HO)
  pd1enc.def    2012/11/06 v6.83m Hyperref: PDFDocEncoding definition (HO)
hyperref.cfg    2002/06/06 v1.2 hyperref configuration of TeXLive
     url.sty    2013/09/16  ver 3.4  Verb mode for urls, etc.
 hpdftex.def    2012/11/06 v6.83m Hyperref driver for pdfTeX
rerunfilecheck.sty    2011/04/15 v1.7 Rerun checks for auxiliary files (HO)
placeins.sty    2005/04/18  v 2.2
fancyhdr.sty    
 wrapfig.sty    2003/01/31  v 3.6
idxlayout.sty    2012/03/30 v0.4d Configurable index layout
etoolbox.sty    2015/08/02 v2.2a e-TeX tools for LaTeX (JAW)
multicol.sty    2015/08/19 v1.8n multicolumn formatting (FMi)
tocbibind.sty    2010/10/13 v1.5k extra ToC listings
ragged2e.sty    2009/05/21 v2.1 ragged2e Package (MS)
everysel.sty    2011/10/28 v1.2 EverySelectfont Package (MS)
   t1lmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
supp-pdf.mkii
  mt-cmr.cfg    2013/05/19 v2.2 microtype config. file: Computer Modern Roman (
RS)
epstopdf-base.sty    2010/02/09 v2.5 Base part for package epstopdf
  grfext.sty    2010/08/19 v1.1 Manage graphics extensions (HO)
epstopdf-sys.cfg    2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Live
 ucsencs.def    2011/01/21 Fixes to fontencodings LGR, T3
 nameref.sty    2012/10/27 v2.43 Cross-referencing by name of section
gettitlestring.sty    2010/12/03 v1.4 Cleanup title references (HO)
admon_colors2.out
admon_colors2.out
newcommands_bfmath.tex
newcommands_replace.tex
  ot1lmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
  omllmm.fd    2009/10/30 v1.6 Font defs for Latin Modern
 omslmsy.fd    2009/10/30 v1.6 Font defs for Latin Modern
 omxlmex.fd    2009/10/30 v1.6 Font defs for Latin Modern
    umsa.fd    2013/01/14 v3.01 AMS symbols A
  mt-msa.cfg    2006/02/04 v1.1 microtype config. file: AMS symbols (a) (RS)
    umsb.fd    2013/01/14 v3.01 AMS symbols B
  mt-msb.cfg    2005/06/01 v1.0 microtype config. file: AMS symbols (b) (RS)
lstlang1.sty    2015/06/04 1.6 listings language file
  t1lmtt.fd    2009/10/30 v1.6 Font defs for Latin Modern
  omslmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
latex_figs/warning.pdf
latex_figs/warning.pdf
latex_figs/warning.pdf
latex_figs/notice.pdf
latex_figs/notice.pdf
latex_figs/question.pdf
latex_figs/question.pdf
latex_figs/warning.pdf
latex_figs/warning.pdf
latex_figs/notice.pdf
testfigs/wave1D.png
latex_figs/summary.pdf
 ***********

 ){/usr/share/texmf/fonts/enc/dvips/lm/lm-ec.enc}{/usr/share/texmf/fonts/enc/dv
ips/lm/lm-mathit.enc}{/usr/share/texmf/fonts/enc/dvips/lm/lm-rm.enc}{/usr/share
/texmf/fonts/enc/dvips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/ty
pe1/public/amsfonts/cm/cmmib10.pfb></usr/share/texmf/fonts/type1/public/lm/lmbx
10.pfb></usr/share/texmf/fonts/type1/public/lm/lmbx12.pfb></usr/share/texmf/fon
ts/type1/public/lm/lmmi10.pfb></usr/share/texmf/fonts/type1/public/lm/lmmi12.pf
b></usr/share/texmf/fonts/type1/public/lm/lmmi7.pfb></usr/share/texmf/fonts/typ
e1/public/lm/lmr10.pfb></usr/share/texmf/fonts/type1/public/lm/lmr12.pfb></usr/
share/texmf/fonts/type1/public/lm/lmr7.pfb></usr/share/texmf/fonts/type1/public
/lm/lmr8.pfb></usr/share/texmf/fonts/type1/public/lm/lmri10.pfb></usr/share/tex
mf/fonts/type1/public/lm/lmri8.pfb></usr/share/texmf/fonts/type1/public/lm/lmsy
10.pfb></usr/share/texmf/fonts/type1/public/lm/lmsy7.pfb></usr/share/texmf/font
s/type1/public/lm/lmsy8.pfb></usr/share/texmf/fonts/type1/public/lm/lmtk10.pfb>
</usr/share/texmf/fonts/type1/public/lm/lmtt10.pfb></usr/share/texmf/fonts/type
1/public/lm/lmtt9.pfb>
Output written on admon_colors2.pdf (6 pages, 313848 bytes).
Transcript written on admon_colors2.log.
admon=colors2
latex_figs:
notice.pdf
question.pdf
summary.pdf
warning.pdf
running preprocess -DFORMAT=pdflatex -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to pdflatex
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format pdflatex
Final all \\label\{(.+?)\}
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
*** error: character "," is not legal in notice admon title:
   "Note, eventually!"
    for --latex_admon=mdfbox
    see if you can replace , by "and" or a dash...
    (the character will simply be removed if you override the abortion)
avoided abortion because of --no-abort
*** made directory latex_figs for admon figures
*** error: character "," is not legal in summary admon title:
   "Concluding remarks, for the novice"
    for --latex_admon=mdfbox
    see if you can replace , by "and" or a dash...
    (the character will simply be removed if you override the abortion)
avoided abortion because of --no-abort
output in admon.p.tex
\bpycod2 (!bc pycod2) -> \begin{minted}{python}

\bpypro2 (!bc pypro2) -> \begin{minted}{python}

\bpycod (!bc pycod) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95,xleftmargin=0mm]

\bdat (!bc dat) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("dat" is unsupported so we use Verbatim)

output in admon.tex
running preprocess -DFORMAT=html -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to html
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
A list of dependencies for HTML output is in .admon_html_file_collection
output in admon.html
running preprocess -DFORMAT=html -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to html
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
A list of dependencies for HTML output is in .admon_html_file_collection
output in admon.html
running preprocess -DFORMAT=html -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to html
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
A list of dependencies for HTML output is in .admon_html_file_collection
output in admon.html
running preprocess -DFORMAT=html -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to html
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
A list of dependencies for HTML output is in .admon_html_file_collection
output in admon.html
running preprocess -DFORMAT=html -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to html
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
A list of dependencies for HTML output is in .admon_html_file_collection
output in admon.html
running preprocess -DFORMAT=html -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to html
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: --pygm_style=default is not recommended when --html_style=solarized
    automatically changed to --html_style=perldoc
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
A list of dependencies for HTML output is in .admon_html_file_collection
output in admon.html
running preprocess -DFORMAT=html -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to html
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: TITLE may look strange with a template -
             it is recommended to comment out the title: #TITLE:

*** warning: AUTHOR may look strange with a template -
 it is recommended to comment out all authors: #AUTHOR.
 Usually better to hardcode authors in a footer in the template.
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
A list of dependencies for HTML output is in .admon_html_file_collection
output in admon.html
running preprocess -DFORMAT=html -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to html
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
A list of dependencies for HTML output is in .admon_html_file_collection
output in admon.html
admon_bootstrap_alert.html now links to the generated files
._admon_bootstrap_alert000.html, ._admon_bootstrap_alert001.html
running preprocess -DFORMAT=html -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to html
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
A list of dependencies for HTML output is in .admon_html_file_collection
output in admon.html
Making tmp_admon
Welcome to the Sphinx 4.3.2 quickstart utility.

Please enter values for the following settings (just press Enter to
accept a default value, if one is given in brackets).

Selected root path: .

Error: an existing conf.py has been found in the selected root path.
sphinx-quickstart will not overwrite existing Sphinx projects.

> Please enter a new root path (or just Enter to exit) []: 
You have two options for placing the build directory for Sphinx output.
Either, you use a directory "_build" within the root path, or you separate
"source" and "build" directories within the root path.
> Separate source and build directories (y/n) [n]: 
The project name will occur in several places in the built documentation.
> Project name: > Author name(s): > Project release []: 
If the documents are to be written in a language other than English,
you can select a language here by its language code. Sphinx will then
translate text that it generates into that language.

For a list of supported codes, see
https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-language.
> Project language [en]: 
Creating file /app/test/tmp_admon/conf.py.
Creating file /app/test/tmp_admon/index.rst.
Creating file /app/test/tmp_admon/Makefile.
Creating file /app/test/tmp_admon/make.bat.

Finished: An initial directory structure has been created.

You should now populate your master file /app/test/tmp_admon/index.rst and create other documentation
source files. Use the Makefile to build the docs, like so:
   make builder
where "builder" is one of the supported builders, e.g. html, latex or linkcheck.

title: Testing admons
author: H. P. Langtangen
copyright: 2022, H. P. Langtangen

Made with DocOnce
theme: classic

These Sphinx themes were found: ADCtheme, agni, agogo, alabaster, basic, basicstrap, bizstyle, bloodish, bootstrap, cbc, classic, default, epub, fenics, fenics_classic, fenics_minimal1, fenics_minimal2, haiku, jal, nature, pylons, pyramid, scipy_lectures, scrolls, slim-agogo, sphinxdoc, traditional, uio, uio2, vlinux-theme
'automake_sphinx.py' contains the steps to (re)compile the sphinx
version. You may want to edit this file, or run the steps manually,
or just run it by

  python automake_sphinx.py

Removing everything under '_build'...
Running Sphinx v4.3.2
loading translations [1.0]... not available for built-in messages
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 2 source files that are out of date
updating environment: [new config] 2 added, 0 changed, 0 removed
reading sources... [ 50%] admon
reading sources... [100%] index

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 50%] admon
writing output... [100%] index

generating indices... genindex done
writing additional pages... search done
copying images... [100%] wave1D.png

copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 1 warning.

The HTML pages are in _build/html.
copy: testfigs/wave1D.png to tmp_admon
/app/test/tmp_admon
running make clean
running make html
Fix generated files:
admon.html
genindex.html
index.html
search.html


google-chrome tmp_admon/_build/html/index.html

running preprocess -DFORMAT=mwiki -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to mwiki
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format mwiki
 ...checking if wave1D.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file wave1D.png to
    common.wikimedia.org
 ...for now we use local file Wave1D.png
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
output in admon.mwiki
running preprocess -DFORMAT=plain -DDEVICE=screen  admon.do.txt > tmp_preprocess__admon.do.txt
Translating doconce text in tmp_preprocess__admon.do.txt to plain
*** warning: wrong text size "illegal-size" specified in notice environment!
    must be "large" or "small" - will be set to normal
output in admon.txt
replacing ../doc/src/manual/fig/wave1D by ../../doc/src/manual/fig/wave1D in admon_paragraph-footnotesize.html
Translating doconce text in test_boots.do.txt to html
*** warning: !bc ipy used for IPython sessions, but
    ipython is not supported for syntax highlighting!
    install:
    pip install pygments-ipython-console
no lexer for alias 'ipy' found
output in test_boots.html
test_boots.html now links to the generated files
._test_boots000.html, ._test_boots001.html, ._test_boots002.html
Translating doconce text in github_md.do.txt to pandoc
output in github_md.md
Translating doconce text in markdown_input.do.txt to html
output in markdown_input.html
running preprocess -DFORMAT=html -DDEVICE=screen  movies.do.txt > tmp_preprocess__movies.do.txt
Translating doconce text in tmp_preprocess__movies.do.txt to html
... movie: trying to find https://github.com/doconce/doconce_doc/blob/main/src/manual/mov/wave.mp4 ...
    found!
... movie: trying to find https://github.com/doconce/doconce_doc/blob/main/src/manual/mov/wave.webm ...
    found!
... movie: trying to find https://github.com/doconce/doconce_doc/blob/main/src/manual/mov/wave.ogg ...
    found!
A list of dependencies for HTML output is in .movies_html_file_collection
output in movies_3choices.html
running preprocess -DFORMAT=html -DDEVICE=screen  movies.do.txt > tmp_preprocess__movies.do.txt
Translating doconce text in tmp_preprocess__movies.do.txt to html
... movie: trying to find https://github.com/doconce/doconce_doc/blob/main/src/manual/mov/wave.mp4 ...
    found!
... movie: trying to find https://github.com/doconce/doconce_doc/blob/main/src/manual/mov/wave.webm ...
    found!
... movie: trying to find https://github.com/doconce/doconce_doc/blob/main/src/manual/mov/wave.ogg ...
    found!
A list of dependencies for HTML output is in .movies_html_file_collection
output in movies.html
running preprocess -DFORMAT=pdflatex -DDEVICE=screen  movies.do.txt > tmp_preprocess__movies.do.txt
Translating doconce text in tmp_preprocess__movies.do.txt to pdflatex
Final all \\label\{(.+?)\}
*** made link to new HTML file movie_player1.html
    with code to display the movie 
    https://hplgit.github.io/animate/doc/pub/mov-animate/frames/frame_%04d.png:80->129
output in movies.p.tex
\bdat (!bc dat) -> \begin{Verbatim}[numbers=none,fontsize=\fontsize{9pt}{9pt},baselinestretch=0.95] ("dat" is unsupported so we use Verbatim)

output in movies.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./movies.tex
LaTeX2e <2016/02/01>
Babel <3.9q> and hyphenation patterns for 3 language(s) loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/relsize/relsize.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/setspace/setspace.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/ltablex/ltablex.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/tabularx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype-pdftex.def)
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/fancybox/fancybox.sty
Style option: `fancybox' v1.4 <2010/05/15> (tvz)
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[5] (./movies.aux)

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4pt> <use ../doc/src/manual/mov/wave_frames/frame_0129.png> <../doc/src/manual/
mov/wave_frames/frame_0129.png> <a0,fr49>

LaTeX Warning: Reference `LastPage' on page 1 undefined on input line 291.

[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
Overfull \hbox (86.83095pt too wide) in paragraph at lines 301--302
 []\T1/lmr/m/n/10 (-20) : 

Overfull \hbox (0.78871pt too wide) in paragraph at lines 348--349
[]\T1/lmr/m/n/10 (-20) Movie 9: [][]$\T1/lmtt/m/n/10 https : / / github . com /
 doconce / doconce _ doc / blob / main /

LaTeX Warning: Reference `mov:wave' on page 2 undefined on input line 381.

[2] (./movies.aux

Package atenddvi Warning: Rerun LaTeX, last page not yet found.


Package animate Warning: @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
(animate)                @@ Rerun to get internal references right! @@
(animate)                @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@.

)

 *File List*
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   color.sty    1999/02/16
   color.cfg    2007/01/18 v1.5 color configuration of teTeX/TeXLive
  pdftex.def    2011/05/27 v0.06d Graphics/color for pdfTeX
infwarerr.sty    2010/04/08 v1.3 Providing info/warning/error messages (HO)
 ltxcmds.sty    2011/11/09 v1.22 LaTeX kernel commands for general use (HO)
setspace.sty    2011/12/19 v6.7a set line spacing
 amsmath.sty    2016/03/03 v2.15a AMS math features
 amstext.sty    2000/06/29 v2.01 AMS text
  amsgen.sty    1999/11/30 v2.0 generic functions
  amsbsy.sty    1999/11/29 v1.2d Bold Symbols
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amsfonts.sty    2013/01/14 v3.01 Basic AMSFonts support
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colortbl.sty    2012/02/13 v1.0a Color table columns (DPC)
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longtable.sty    2014/10/28 v4.11 Multi-page Table package (DPC)
tabularx.sty    2014/10/28 v2.10 `tabularx' package (DPC)
microtype.sty    2013/05/23 v2.5a Micro-typographical refinements (RS)
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microtype-pdftex.def    2013/05/23 v2.5a Definitions specific to pdftex (RS)
microtype.cfg    2013/05/23 v2.5a microtype main configuration file (RS)
graphicx.sty    2014/10/28 v1.0g Enhanced LaTeX Graphics (DPC,SPQR)
graphics.sty    2016/01/03 v1.0q Standard LaTeX Graphics (DPC,SPQR)
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graphics.cfg    2010/04/23 v1.9 graphics configuration of TeX Live
fancybox.sty    2010/05/15 1.4
 animate.sty    2016/03/15 PDF animations from files and inline graphics
  ifthen.sty    2014/09/29 v1.1c Standard LaTeX ifthen package (DPC)
   ifpdf.sty    2011/01/30 v2.3 Provides the ifpdf switch (HO)
ifluatex.sty    2010/03/01 v1.3 Provides the ifluatex switch (HO)
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atenddvi.sty    2007/04/17 v1.1 At end DVI hook (HO)
zref-abspage.sty    2012/04/04 v2.24 Module abspage for zref (HO)
zref-base.sty    2012/04/04 v2.24 Module base for zref (HO)
kvsetkeys.sty    2012/04/25 v1.16 Key value parser (HO)
etexcmds.sty    2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO)
kvdefinekeys.sty    2011/04/07 v1.3 Define keys (HO)
pdftexcmds.sty    2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO)
 auxhook.sty    2011/03/04 v1.3 Hooks for auxiliary files (HO)
atbegshi.sty    2011/10/05 v1.16 At begin shipout hook (HO)
zref-lastpage.sty    2012/04/04 v2.24 Module lastpage for zref (HO)
atveryend.sty    2011/06/30 v1.8 Hooks at the very end of document (HO)
  animfp.sty    2009/07/23 fixed point addition for animate.sty
 pdfbase.sty    2016/03/11 v0.7 driver independent access to low-level PDF feat
ures
   expl3.sty    2016/01/19 v6377 L3 programming layer (loader) 
expl3-code.tex    2016/01/19 v6377 L3 programming layer 
l3pdfmode.def    2015/11/11 v6250 L3 Experimental driver: PDF mode
 l3regex.sty    2016/01/19 v6377 L3 Experimental regular expressions
l3tl-build.sty    2016/01/19 v6377 L3 Experimental token list construction
l3tl-analysis.sty    2015/11/09 v6244 L3 Experimental token lists analysis
  l3flag.sty    2016/01/19 v6377 L3 Experimental flags
l3str-convert.sty    2015/09/26 v6106 L3 Experimental string encoding conversio
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l3keys2e.sty    2016/01/19 v6377 LaTeX2e option processing using LaTeX3 keys
 ocgbase.sty    2016/03/11 v0.6 support package for ocgx2.sty
supp-pdf.mkii
fancyvrb.sty    2008/02/07
 fontenc.sty
   t1enc.def    2005/09/27 v1.99g Standard LaTeX file
     ucs.sty    2013/05/11 v2.2 UCS: Unicode input support
uni-global.def    2013/05/13 UCS: Unicode global data
inputenc.sty    2015/03/17 v1.2c Input encoding file
   utf8x.def    2004/10/17 UCS: Input encoding UTF-8
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hyperref.sty    2012/11/06 v6.83m Hypertext links for LaTeX
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hobsub-generic.sty    2012/05/28 v1.13 Bundle oberdiek, subset generic (HO)
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  ifvtex.sty    2010/03/01 v1.5 Detect VTeX and its facilities (HO)
 intcalc.sty    2007/09/27 v1.1 Expandable calculations with integers (HO)
pdfescape.sty    2011/11/25 v1.13 Implements pdfTeX's escape features (HO)
bigintcalc.sty    2012/04/08 v1.3 Expandable calculations on big integers (HO)
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uniquecounter.sty    2011/01/30 v1.2 Provide unlimited unique counter (HO)
letltxmacro.sty    2010/09/02 v1.4 Let assignment for LaTeX macros (HO)
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xcolor-patch.sty    2011/01/30 xcolor patch
refcount.sty    2011/10/16 v3.4 Data extraction from label references (HO)
 hycolor.sty    2011/01/30 v1.7 Color options for hyperref/bookmark (HO)
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kvoptions.sty    2011/06/30 v3.11 Key value format for package options (HO)
  pd1enc.def    2012/11/06 v6.83m Hyperref: PDFDocEncoding definition (HO)
hyperref.cfg    2002/06/06 v1.2 hyperref configuration of TeXLive
     url.sty    2013/09/16  ver 3.4  Verb mode for urls, etc.
 hpdftex.def    2012/11/06 v6.83m Hyperref driver for pdfTeX
rerunfilecheck.sty    2011/04/15 v1.7 Rerun checks for auxiliary files (HO)
idxlayout.sty    2012/03/30 v0.4d Configurable index layout
etoolbox.sty    2015/08/02 v2.2a e-TeX tools for LaTeX (JAW)
multicol.sty    2015/08/19 v1.8n multicolumn formatting (FMi)
tocbibind.sty    2010/10/13 v1.5k extra ToC listings
ragged2e.sty    2009/05/21 v2.1 ragged2e Package (MS)
everysel.sty    2011/10/28 v1.2 EverySelectfont Package (MS)
   t1lmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
  mt-cmr.cfg    2013/05/19 v2.2 microtype config. file: Computer Modern Roman (
RS)
epstopdf-base.sty    2010/02/09 v2.5 Base part for package epstopdf
  grfext.sty    2010/08/19 v1.1 Manage graphics extensions (HO)
epstopdf-sys.cfg    2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Live
 ucsencs.def    2011/01/21 Fixes to fontencodings LGR, T3
 nameref.sty    2012/10/27 v2.43 Cross-referencing by name of section
gettitlestring.sty    2010/12/03 v1.4 Cleanup title references (HO)
  movies.out
  movies.out
newcommands_bfmath.tex
newcommands_replace.tex
  ot1lmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
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../doc/src/manual/mov/wave_frames/frame_0080.png
../doc/src/manual/mov/wave_frames/frame_0081.png
../doc/src/manual/mov/wave_frames/frame_0082.png
../doc/src/manual/mov/wave_frames/frame_0083.png
../doc/src/manual/mov/wave_frames/frame_0084.png
../doc/src/manual/mov/wave_frames/frame_0085.png
../doc/src/manual/mov/wave_frames/frame_0086.png
../doc/src/manual/mov/wave_frames/frame_0087.png
../doc/src/manual/mov/wave_frames/frame_0088.png
../doc/src/manual/mov/wave_frames/frame_0089.png
../doc/src/manual/mov/wave_frames/frame_0090.png
../doc/src/manual/mov/wave_frames/frame_0091.png
../doc/src/manual/mov/wave_frames/frame_0092.png
../doc/src/manual/mov/wave_frames/frame_0093.png
../doc/src/manual/mov/wave_frames/frame_0094.png
../doc/src/manual/mov/wave_frames/frame_0095.png
../doc/src/manual/mov/wave_frames/frame_0096.png
../doc/src/manual/mov/wave_frames/frame_0097.png
../doc/src/manual/mov/wave_frames/frame_0098.png
../doc/src/manual/mov/wave_frames/frame_0099.png
../doc/src/manual/mov/wave_frames/frame_0100.png
../doc/src/manual/mov/wave_frames/frame_0101.png
../doc/src/manual/mov/wave_frames/frame_0102.png
../doc/src/manual/mov/wave_frames/frame_0103.png
../doc/src/manual/mov/wave_frames/frame_0104.png
../doc/src/manual/mov/wave_frames/frame_0105.png
../doc/src/manual/mov/wave_frames/frame_0106.png
../doc/src/manual/mov/wave_frames/frame_0107.png
../doc/src/manual/mov/wave_frames/frame_0108.png
../doc/src/manual/mov/wave_frames/frame_0109.png
../doc/src/manual/mov/wave_frames/frame_0110.png
../doc/src/manual/mov/wave_frames/frame_0111.png
../doc/src/manual/mov/wave_frames/frame_0112.png
../doc/src/manual/mov/wave_frames/frame_0113.png
../doc/src/manual/mov/wave_frames/frame_0114.png
../doc/src/manual/mov/wave_frames/frame_0115.png
../doc/src/manual/mov/wave_frames/frame_0116.png
../doc/src/manual/mov/wave_frames/frame_0117.png
../doc/src/manual/mov/wave_frames/frame_0118.png
../doc/src/manual/mov/wave_frames/frame_0119.png
../doc/src/manual/mov/wave_frames/frame_0120.png
../doc/src/manual/mov/wave_frames/frame_0121.png
../doc/src/manual/mov/wave_frames/frame_0122.png
../doc/src/manual/mov/wave_frames/frame_0123.png
../doc/src/manual/mov/wave_frames/frame_0124.png
../doc/src/manual/mov/wave_frames/frame_0125.png
../doc/src/manual/mov/wave_frames/frame_0126.png
../doc/src/manual/mov/wave_frames/frame_0127.png
../doc/src/manual/mov/wave_frames/frame_0128.png
../doc/src/manual/mov/wave_frames/frame_0129.png
 ***********


LaTeX Warning: There were undefined references.


LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.

 )
(see the transcript file for additional information){/usr/share/texmf/fonts/enc
/dvips/lm/lm-ec.enc}</usr/share/texmf/fonts/type1/public/lm/lmbx10.pfb></usr/sh
are/texmf/fonts/type1/public/lm/lmbx12.pfb></usr/share/texmf/fonts/type1/public
/lm/lmr10.pfb></usr/share/texmf/fonts/type1/public/lm/lmtt10.pfb></usr/share/te
xmf/fonts/type1/public/lm/lmtt9.pfb>
Output written on movies.pdf (2 pages, 941389 bytes).
Transcript written on movies.log.
running preprocess -DFORMAT=plain -DDEVICE=screen  movies.do.txt > tmp_preprocess__movies.do.txt
Translating doconce text in tmp_preprocess__movies.do.txt to plain
*** made link to new HTML file movie_player1.html
    with code to display the movie 
    ../doc/src/manual/mov/wave.webm
*** made link to new HTML file movie_player2.html
    with code to display the movie 
    ../doc/src/manual/mov/wave.ogg
*** made link to new HTML file movie_player3.html
    with code to display the movie 
    ../doc/src/manual/mov/wave.mp4
*** made link to new HTML file movie_player4.html
    with code to display the movie 
    ../doc/src/manual/mov/wave.flv
*** made link to new HTML file movie_player5.html
    with code to display the movie 
    ../doc/src/manual/mov/wave_frames/frame_*.png
*** made link to new HTML file movie_player6.html
    with code to display the movie 
    https://hplgit.github.io/animate/doc/pub/mov-animate/frames/frame_%04d.png:80->129
*** made link to new HTML file movie_player7.html
    with code to display the movie 
    ../doc/src/manual/mov/wave.mpeg
*** made link to new HTML file movie_player8.html
    with code to display the movie 
    ../doc/src/manual/mov/wave.avi
... movie: trying to find https://github.com/doconce/doconce_doc/blob/main/src/manual/mov/wave.mp4 ...
    found!
... movie: trying to find https://github.com/doconce/doconce_doc/blob/main/src/manual/mov/wave.webm ...
    found!
... movie: trying to find https://github.com/doconce/doconce_doc/blob/main/src/manual/mov/wave.ogg ...
    found!
*** made link to new HTML file movie_player9.html
    with code to display the movie 
    https://github.com/doconce/doconce_doc/blob/main/src/manual/mov/wave.ogg
*** made link to new HTML file movie_player10.html
    with code to display the movie 
    https://www.youtube.com/watch?v=_O7iUiftbKU
*** made link to new HTML file movie_player11.html
    with code to display the movie 
    https://vimeo.com/55562330
output in movies.txt
Translating doconce text in locale.do.txt to html
open file with encoding utf-8
*** locale set to Norwegian
found info about 2 exercises
... checking existence of https://github.com/doconce/doconce_doc/blob/main/src/blog/f_plot.png ...
    found!
output in locale.html
Translating doconce text in locale.do.txt to pdflatex
open file with encoding utf-8
*** locale set to Norwegian
found info about 2 exercises
... checking existence of https://github.com/doconce/doconce_doc/blob/main/src/blog/f_plot.png ...
    found!
... checking existence of https://github.com/doconce/doconce_doc/blob/main/src/blog/f_plot.png ...
    found!
Final all \\label\{(.+?)\}
*** made directory latex_figs for admon figures
output in locale.tex
running preprocess -DFORMAT=pdflatex -DDEVICE=paper -DPRIMER_BOOK -DCHAPTER="chapter" -DBOOK="book" -DAPPENDIX="appendix" -DALG="code" Springer_T2_book.do.txt > tmp_preprocess__Springer_T2_book.do.txt
running mako on tmp_preprocess__Springer_T2_book.do.txt to make tmp_mako__Springer_T2_book.do.txt
mako variables: {'FORMAT': 'pdflatex', 'DEVICE': 'paper', 'CHAPTER': 'chapter', 'BOOK': 'book', 'APPENDIX': 'appendix', 'PRIMER_BOOK': True, 'ALG': 'code'}
Translating doconce text in tmp_mako__Springer_T2_book.do.txt to pdflatex
open file with encoding utf-8
found info about 2 exercises
standalone exercises in Springer_T2_book_exercises.zip
Final all \\label\{(.+?)\}

exporting publish database papers.pub to papers.bib:
output in Springer_T2_book.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./Springer_T2_book.tex
LaTeX2e <2016/02/01>
Babel <3.9q> and hyphenation patterns for 3 language(s) loaded.
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Chapter 1.

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Chapter 2.

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Appendix A.

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Springer_T2_book.bbl
Springer_T2_book.ind
 ***********


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Output written on Springer_T2_book.pdf (27 pages, 402935 bytes).
Transcript written on Springer_T2_book.log.
Archive:  Springer_T2_book_exercises.zip
 extracting: standalone_exercises/Chapter_2.1.do.txt  
 extracting: standalone_exercises/Chapter_2.2.do.txt  
 extracting: standalone_exercises/solutions.do.txt  
 extracting: standalone_exercises/make.py  
^.*? (AM|PM) -  replaced by <empty string> in automake_sphinx.log
Translating doconce text in encoding1.do.txt to html
output in encoding1.html
*** debug output in _doconce_debugging.log
running preprocess -DFORMAT=latex -DDEVICE=screen  encoding3.do.txt > tmp_preprocess__encoding3.do.txt
Translating doconce text in tmp_preprocess__encoding3.do.txt to latex
Final all \\label\{(.+?)\}
output in encoding3.p.tex
*** debug output in _doconce_debugging.log
running preprocess -DFORMAT=html -DDEVICE=screen  encoding3.do.txt > tmp_preprocess__encoding3.do.txt
Translating doconce text in tmp_preprocess__encoding3.do.txt to html
output in encoding3.html
running preprocess -DFORMAT=latex -DDEVICE=screen -DPREPROCESS encoding3.do.txt > tmp_preprocess__encoding3.do.txt
Translating doconce text in tmp_preprocess__encoding3.do.txt to latex
Final all \\label\{(.+?)\}
output in encoding3.p.tex
running preprocess -DFORMAT=html -DDEVICE=screen -DPREPROCESS encoding3.do.txt > tmp_preprocess__encoding3.do.txt
Translating doconce text in tmp_preprocess__encoding3.do.txt to html
output in encoding3.html
*** debug output in _doconce_debugging.log
running preprocess -DFORMAT=html -DDEVICE=screen -DPREPROCESS encoding3.do.txt > tmp_preprocess__encoding3.do.txt
Translating doconce text in tmp_preprocess__encoding3.do.txt to html
open file with encoding utf-8
output in encoding3.html
running preprocess -DFORMAT=latex -DDEVICE=screen -DMAKO encoding3.do.txt > tmp_preprocess__encoding3.do.txt
running mako on tmp_preprocess__encoding3.do.txt to make tmp_mako__encoding3.do.txt
mako variables: {'FORMAT': 'latex', 'DEVICE': 'screen', 'MAKO': True}
Translating doconce text in tmp_mako__encoding3.do.txt to latex
Final all \\label\{(.+?)\}
output in encoding3.p.tex
running preprocess -DFORMAT=latex -DDEVICE=screen -DMAKO encoding3.do.txt > tmp_preprocess__encoding3.do.txt
running mako on tmp_preprocess__encoding3.do.txt to make tmp_mako__encoding3.do.txt
mako variables: {'FORMAT': 'latex', 'DEVICE': 'screen', 'MAKO': True}
Translating doconce text in tmp_mako__encoding3.do.txt to latex
open file with encoding utf-8
Final all \\label\{(.+?)\}
output in encoding3.p.tex
*** debug output in _doconce_debugging.log
running preprocess -DFORMAT=html -DDEVICE=screen -DMAKO encoding3.do.txt > tmp_preprocess__encoding3.do.txt
running mako on tmp_preprocess__encoding3.do.txt to make tmp_mako__encoding3.do.txt
mako variables: {'FORMAT': 'html', 'DEVICE': 'screen', 'MAKO': True}
Translating doconce text in tmp_mako__encoding3.do.txt to html
open file with encoding utf-8
output in encoding3.html
running mako on mako_test1.do.txt to make tmp_mako__mako_test1.do.txt
Translating doconce text in tmp_mako__mako_test1.do.txt to html
output in mako_test1.html
Translating doconce text in mako_test2.do.txt to html
output in mako_test2.html
running mako on mako_test3.do.txt to make tmp_mako__mako_test3.do.txt
Translating doconce text in tmp_mako__mako_test3.do.txt to html
output in mako_test3.html
running mako on mako_test3.do.txt to make tmp_mako__mako_test3.do.txt
Translating doconce text in tmp_mako__mako_test3.do.txt to html
output in mako_test3.html
running mako on mako_test4.do.txt to make tmp_mako__mako_test4.do.txt
Translating doconce text in tmp_mako__mako_test4.do.txt to html
output in mako_test4.html
Translating doconce text in tmp2.do.txt to plain

*** error: verbatim code in part of link is not allowed in format plain
    "`myfile.py` file": "https://some.where.net/myfile.py"
    use either link as verbatim code only, "`myfile.py file`",
    or no verbatim: "myfile.py file"
    or use only the verbatim part as link
Abort! (add --no_abort on the command line to avoid this abortion)
replacing `myfile.py` file by `myfile.py` in tmp2.do.txt
failure\}\n\n!bc replaced by failure}\n\nHello\n!bc in tmp2.do.txt
Translating doconce text in tmp2.do.txt to sphinx
ERROR: 1 !bsubex do not match 0 !esubex directives
Missing !esubex after final !bsubex
Abort! (add --no_abort on the command line to avoid this abortion)
replacing !bsubex by  in tmp2.do.txt
Translating doconce text in tmp2.do.txt to sphinx
*** error: heading "===== Normal section with exercise envirs are detected by syntax checks =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Links to local files shall give warning =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Failure of tables =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level

*** error: line before list, !bc, !bt or @@@CODE block is a comment line
which will "swallow" the block in reST format.
    Insert some extra line (text) to separate the two elements.

# Comment before list

 * A1
 * A2

Normal text.

===== Normal section with exe
Abort! (add --no_abort on the command line to avoid this abortion)
replacing # Comment before list by  in tmp2.do.txt
Translating doconce text in tmp2.do.txt to sphinx
*** error: heading "===== Normal section with exercise envirs are detected by syntax checks =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Links to local files shall give warning =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Failure of tables =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level

*** warning: found \cite{...} with backslash
    (cite{...} has no backslash in DocOnce syntax)
\cite{mybook}

*** warning: found \idx{...} (idx{...} has no backslash)
\idx{youridx}
Abort! (add --no_abort on the command line to avoid this abortion)
replacing \idx by idx in tmp2.do.txt
replacing \cite by cite in tmp2.do.txt
Translating doconce text in tmp2.do.txt to rst

*** error: the "rst" format must have a plain sentence before
a code block like !bc/!bt/@@@CODE, not a section/paragraph heading,
table, or comment:

---------------------------------
ybook}.

__Paragraph before code is bad.__



!bc
More verbatim stuff.
!ec

Can we successfully say `__call__` and `__ad
---------------------------------
Abort! (add --no_abort on the command line to avoid this abortion)
__Paragraph before.+!bc replaced by !bc in tmp2.do.txt
Translating doconce text in tmp2.do.txt to rst
*** error: heading "===== Normal section with exercise envirs are detected by syntax checks =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Links to local files shall give warning =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Failure of tables =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level

*** warning: found \label{...} with backslash
    (label{...} has no backslash in DocOnce syntax)
\label{mylab}
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.png ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.png not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.gif ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.gif not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpg ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpg not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpeg ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpeg not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.pdf ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.pdf not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.eps ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.eps not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.ps ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.ps not found
*** error: figure https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99:
    could not find URL with legal extension .png, .gif, .jpg, .jpeg, .pdf, .eps, .ps
Abort! (add --no_abort on the command line to avoid this abortion)
replacing \label by label in tmp2.do.txt
Translating doconce text in tmp2.do.txt to sphinx
*** error: heading "===== Normal section with exercise envirs are detected by syntax checks =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Links to local files shall give warning =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Failure of tables =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** warning: hyperlink to URL ../lib/doconce/doconce.py is to a local file,
    recommended to be _static/../lib/doconce/doconce.py for sphinx
    move linked file to _static and change URLs unless
    you really know that the links will be correct when the
    sphinx build directory is moved to its final destination
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format sphinx
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.png ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.png not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.gif ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.gif not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpg ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpg not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpeg ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpeg not found
*** error: figure https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99:
    could not find URL with legal extension .png, .gif, .jpg, .jpeg
Abort! (add --no_abort on the command line to avoid this abortion)
Translating doconce text in tmp2.do.txt to sphinx
*** error: heading "===== Normal section with exercise envirs are detected by syntax checks =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Links to local files shall give warning =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Failure of tables =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** warning: hyperlink to URL ../lib/doconce/doconce.py is to a local file,
    recommended to be _static/../lib/doconce/doconce.py for sphinx
    move linked file to _static and change URLs unless
    you really know that the links will be correct when the
    sphinx build directory is moved to its final destination
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format sphinx
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.png ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.png not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.gif ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.gif not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpg ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpg not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpeg ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99.jpeg not found
*** error: figure https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media99:
    could not find URL with legal extension .png, .gif, .jpg, .jpeg
Abort! (add --no_abort on the command line to avoid this abortion)
replacing ../lib/doconce/doconce.py by _static/doconce.py in tmp2.do.txt
replacing two_media99 by two_media in tmp2.do.txt
Translating doconce text in tmp2.do.txt to html
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.html ...
    found!
figure file https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media:
    can use https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.html for format html
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: you have citations but no bibliography (BIBFILE: ...)
mybook
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.mp4 ...
    https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.mp4 not found
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.webm ...
    https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.webm not found
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.ogg ...
    https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.ogg not found
*** warning: movie "https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.ogg" was not found
    could not find any .ogg/.mp4/.webm version of this filename
*** error: could not translate environment: !bsol

This is an environment in an exercise. Check if the
    heading is correct so the subsection was recognized
    as Exercise, Problem, or Project (Exercise: title).

    Other possible reasons:

     * syntax error in environment name
     * environment inside code: use | instead of !
     * or bug in doconce

    context:

text.</p>

<p>Just a loner subexercise begin.</p>
!bsol
<p>Here is a solution.</p>
!esol
<p>Normal text.<
Abort! (add --no_abort on the command line to avoid this abortion)
replacing |--l---|---l---| by |--l-------l---| in tmp2.do.txt
Translating doconce text in tmp2.do.txt to html
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.html ...
    found!
figure file https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media:
    can use https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.html for format html
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: you have citations but no bibliography (BIBFILE: ...)
mybook
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.mp4 ...
    https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.mp4 not found
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.webm ...
    https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.webm not found
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.ogg ...
    https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.ogg not found
*** warning: movie "https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie99x9.ogg" was not found
    could not find any .ogg/.mp4/.webm version of this filename
*** error: could not translate environment: !bsol

This is an environment in an exercise. Check if the
    heading is correct so the subsection was recognized
    as Exercise, Problem, or Project (Exercise: title).

    Other possible reasons:

     * syntax error in environment name
     * environment inside code: use | instead of !
     * or bug in doconce

    context:

text.</p>

<p>Just a loner subexercise begin.</p>
!bsol
<p>Here is a solution.</p>
!esol
<p>Normal text.<
Abort! (add --no_abort on the command line to avoid this abortion)
replacing 99x9.ogg by .ogg in tmp2.do.txt
Translating doconce text in tmp2.do.txt to html
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.html ...
    found!
figure file https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media:
    can use https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.html for format html
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format html
*** warning: you have citations but no bibliography (BIBFILE: ...)
mybook
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.mp4 ...
    https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.mp4 not found
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.webm ...
    found!
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.ogg ...
    found!
*** error: could not translate environment: !bsol

This is an environment in an exercise. Check if the
    heading is correct so the subsection was recognized
    as Exercise, Problem, or Project (Exercise: title).

    Other possible reasons:

     * syntax error in environment name
     * environment inside code: use | instead of !
     * or bug in doconce

    context:

text.</p>

<p>Just a loner subexercise begin.</p>
!bsol
<p>Here is a solution.</p>
!esol
<p>Normal text.<
Abort! (add --no_abort on the command line to avoid this abortion)
^!bsol.+?!esol replaced by <empty string> in tmp2.do.txt
Translating doconce text in tmp2.do.txt to sphinx
*** error: heading "===== Normal section with exercise envirs are detected by syntax checks =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Links to local files shall give warning =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Failure of tables =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.png ...
    found!
figure file https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media:
    can use https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.png for format sphinx
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format sphinx
*** warning: math only in sphinx figure caption
(it will be ignored by sphinx, resulting in empty caption)
  $a=50$
    FIGURE: [testfigs/wave1D.png
*** warning: math only in sphinx figure caption
(it will be ignored by sphinx, resulting in empty caption)
  $a=50$
    FIGURE: [https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.png
*** warning: you have citations but no bibliography (BIBFILE: ...)
mybook
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.mp4 ...
    https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.mp4 not found
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.webm ...
    found!
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.ogg ...
    found!
output in tmp2.rst
^!bhint.+?!ehint replaced by <empty string> in tmp2.do.txt
Translating doconce text in tmp2.do.txt to sphinx
*** error: heading "===== Normal section with exercise envirs are detected by syntax checks =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Links to local files shall give warning =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
*** error: heading "===== Failure of tables =====" is subsection, but
    this part of the document (after !split) has its first heading as
    subsubsection - the first heading must have the highest level
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format sphinx
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.png ...
    found!
figure file https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media:
    can use https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.png for format sphinx
*** warning: math only in sphinx figure caption
(it will be ignored by sphinx, resulting in empty caption)
  $a=50$
    FIGURE: [testfigs/wave1D.png
*** warning: math only in sphinx figure caption
(it will be ignored by sphinx, resulting in empty caption)
  $a=50$
    FIGURE: [https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.png
*** warning: you have citations but no bibliography (BIBFILE: ...)
mybook
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.mp4 ...
    https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.mp4 not found
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.webm ...
    found!
... movie: trying to find https://hplgit.github.io/INF5620/doc/pub/mov-wave/pulse2_in_two_media/movie.ogg ...
    found!
output in tmp2.rst
Translating doconce text in tmp2.do.txt to pdflatex
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format pdflatex
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.pgf ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.pgf not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.tikz ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.tikz not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.pdf ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.pdf not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.png ...
    found!
figure file https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media:
    can use https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.png for format pdflatex
*** error: hyperlinks inside caption pose problems for
    latex output and --device=paper because they lead
    to footnotes in captions. (Footnotes in floats require
    minipage.) The latex document with compile with
    \protect\footnote, but the footnote is not shown.
    Recommendation: rewrite caption.

-----------
"Google": "https://google.com".
-----------

Abort! (add --no_abort on the command line to avoid this abortion)
Translating doconce text in tmp2.do.txt to pdflatex
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.pgf ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.pgf not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.tikz ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.tikz not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.pdf ...
    https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.pdf not found
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.png ...
    found!
figure file https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media:
    can use https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.png for format pdflatex
figure file testfigs/wave1D:
    can use testfigs/wave1D.png for format pdflatex
... checking existence of https://hplgit.github.io/INF5620/doc/pub/fig-wave/pulse2_in_two_media.png ...
    found!
Final all \\label\{(.+?)\}
*** warning: you have citations but no bibliography (BIBFILE: ...)
mybook
output in tmp2.p.tex

When we reach this point in the script,
it is clearly a successful run of all tests!

