.coveragerc
.editorconfig
.pre-commit-config.yaml
AUTHORS.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
pytest.ini
combined_gene_caller/__init__.py
combined_gene_caller/__main__.py
combined_gene_caller/cli.py
combined_gene_caller.egg-info/PKG-INFO
combined_gene_caller.egg-info/SOURCES.txt
combined_gene_caller.egg-info/dependency_links.txt
combined_gene_caller.egg-info/entry_points.txt
combined_gene_caller.egg-info/requires.txt
combined_gene_caller.egg-info/top_level.txt
tests/tests.yml
tests/test_data/cmsearch.all.tblout.deoverlapped
tests/test_data/input_fgs.faa
tests/test_data/input_fgs.ffn
tests/test_data/input_fgs.out
tests/test_data/input_prodigal.faa
tests/test_data/input_prodigal.ffn
tests/test_data/input_prodigal.out
tests/test_data/expected_output/output_prodigal_and_fgs_formatted.faa
tests/test_data/expected_output/output_prodigal_and_fgs_formatted.ffn