Copying.md
MANIFEST.in
Readme.md
pyproject.toml
requirements.txt
setup.py
workflow.svg
src/yasim_sc/__init__.py
src/yasim_sc/__main__.py
src/yasim_sc/_main/__init__.py
src/yasim_sc/_main/_generate_barcode.py
src/yasim_sc/_main/_generate_barcoded_isoform_replicates.py
src/yasim_sc/_main/_sample_pcg.py
src/yasim_sc/_main/art.py
src/yasim_sc/helper/__init__.py
src/yasim_sc/helper/rna_seq.py
src/yasim_sctcr/__init__.py
src/yasim_sctcr/__main__.py
src/yasim_sctcr.egg-info/PKG-INFO
src/yasim_sctcr.egg-info/SOURCES.txt
src/yasim_sctcr.egg-info/dependency_links.txt
src/yasim_sctcr.egg-info/requires.txt
src/yasim_sctcr.egg-info/top_level.txt
src/yasim_sctcr/_main/__init__.py
src/yasim_sctcr/_main/_exclude_tcr_from_gtf.py
src/yasim_sctcr/_main/convert_anndata.py
src/yasim_sctcr/_main/generate_tcr_cache.py
src/yasim_sctcr/_main/generate_tcr_clonal_expansion.py
src/yasim_sctcr/_main/generate_tcr_depth.py
src/yasim_sctcr/_main/rearrange_tcr.py
src/yasim_sctcr/_main/scaffold.py
src/yasim_sctcr/_main/sample_data/.gitignore
src/yasim_sctcr/_main/sample_data/cdr3_deletion_table.min.json
src/yasim_sctcr/_main/sample_data/cdr3_insertion_table.min.json
src/yasim_sctcr/helper/__init__.py
src/yasim_sctcr/helper/tcr.py